TCONS_00007212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007212
Unique NameTCONS_00007212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007212 ID=TCONS_00007212|Name=TCONS_00007212|organism=Clytia hemisphaerica|type=transcript|length=1653bp
cccccacgtaCACTTTAGTACGCTTTTCGAAGGACCGCCCTCCCCCCTCA
GAGTGTAAAtcctttttgaatggtccctatTGTAAAATTTGCTAACATTA
AAGTAATGTTCTCTTTTCATTCCATAAGCAGTACTTAATTgaacattttg
aaatctttgaagGACTAATCacaagataaaaataaaaatgcctTCGACAC
GAAGAAAAACACAGCAAGATTTGGAACCtaaaacattgaaaagaaaacCT
CATAAGACAGCAGATACCATTATCTGTAGGCAGGAGGCAGATGATCGTAA
AAAGCGCAAATCAACTGGAACTACAACTTGTGTTATCTGTCCTGTTTGTA
CTGTTACTGTTAGAGGAGATGAGAAATTTCATCAGCACTATATTCAAGAG
CTAGAAAAAGTCAAAGAACCCTTTGTTGGAGTTGACATTAAGAAGAAACA
ATATATGACTCGCTTACAGTGGCAGCGGCAACAAAGTAACGAAGAAAGTG
ATACTGAAATTGAGGAGCCAGCAAAATGTCTAGAAGACAGGACTAAAGAT
TTGAATAATGTTCGTAAAAGAAGATATGAGAGATATGCTAACATGTTTTT
AATGTCTATGAAACGTAATCAAGCACGTAACAACAATCACAATCAGACAA
CACATTCCACGTCATCCTCACAAAATACAATAGCAGAGAGCTCATCTGTT
TATGAAGTAGTGTCTTGTGCGGTGTGTAATGAATTTCTTGAAACAAGTAA
CAGTAATAGACATCTATCGAAGTGTTTTGCTAAACATGATTACCAATTTG
AGGTTTTCAGTAGTAGTGATGAGGAGCCAGATGATGAAGAGGAAGATGTT
GACTTAGGTGAGAATTGgatggataacgcacatttccGAAGAGAAGGGAA
TCTAACTCGGCTGGTAATGGAAGATGATGATGGGGACCTTGATATTGATG
GTGATGAAGAAAATGCTCAGTTTGGAAAGCAACAATTCACTGAAAATGAT
GTTATTGTTCCAGTAACAACTGAAGGGTCTGACGAGGAACTTCTTTCAGC
AGTAATTTTACGTGATGCAGTTAGCAATGGAGCTTGTTCTTCAAAGGGTG
AGAATGGATCATTAACTACAAACAAACAAGAAAGTGATAAAGAGAATTCT
GAGATAAACGTAAATCAAACTGTTGAGAAACAAGTGAGAAATATCTTATC
TCAAGCAGGGAATGACTCAAATAAACTCGTTGGATTATTAtctaaatata
taaacaaaacagaagaaaaattagaaaaagacaTTAGTAAGTGTCCAATT
TGTATGGGACCCTATGTTAATCCTGCAGTATCAATCTCTTGTTGGCACAC
GTGTTGTAGTGAATGTTGGCTTCGGGTTTTAGGTTCTAAAAAACTTTGTC
CCAAATGTAATGATATTGTTGCTCCTTCTCAACTACGTAAAATTTATCTA
TGACGTTTTGTGTTTATATCTTAGAATTATATTTTACTTTCAGGTTTGTT
AATATTTCGATACAATGAATAATAACTAAATTGAACAGAACTTAAAATTA
TTTACANtcgttgacccctcattctatcgggaattttatggggaatgaga
tgagaaggtttataaggcttgagtaggacttttaaatttggctgaatttt
tag
Run BLAST on NCBI

protein sequence of TCONS_00007212-protein

>TCONS_00007212-protein ID=TCONS_00007212-protein|Name=TCONS_00007212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MPSTRRKTQQDLEPKTLKRKPHKTADTIICRQEADDRKKRKSTGTTTCVI
CPVCTVTVRGDEKFHQHYIQELEKVKEPFVGVDIKKKQYMTRLQWQRQQS
NEESDTEIEEPAKCLEDRTKDLNNVRKRRYERYANMFLMSMKRNQARNNN
HNQTTHSTSSSQNTIAESSSVYEVVSCAVCNEFLETSNSNRHLSKCFAKH
DYQFEVFSSSDEEPDDEEEDVDLGENWMDNAHFRREGNLTRLVMEDDDGD
LDIDGDEENAQFGKQQFTENDVIVPVTTEGSDEELLSAVILRDAVSNGAC
SSKGENGSLTTNKQESDKENSEINVNQTVEKQVRNILSQAGNDSNKLVGL
LSKYINKTEEKLEKDISKCPICMGPYVNPAVSISCWHTCCSECWLRVLGS
KKLCPKCNDIVAPSQLRKIYL
Run BLAST on NCBI

transcript from alignment at sc0000074:696733..698881-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007212 ID=TCONS_00007212|Name=TCONS_00007212|organism=Clytia hemisphaerica|type=transcript|length=2149bp|location=Sequence derived from alignment at sc0000074:696733..698881- (Clytia hemisphaerica)
CCCCCACGTACACTTTAGTACGCTTTTCGAAGGACCGCCCTCCCCCCTCA
GAGTGTAAATCCTTTTTGAATGGTCCCTATTGTAAAATTTGCTAACATTA
AAGTAATGTTCTCTTTTCATTCCATAAGCAGTACTTAATTGAACATTTTG
AAATCTTTGAAGGACTAATCACAAGATAAAAATAAAAATGCCTTCGACAC
GAAGAAAAACACAGCAAGATTTGGAACCTAAAACATTGAAAAGAAAACCT
CATAAGACAGCAGATACCATTATCTGTAGGCAGGAGGCAGATGATCGTAA
AAAGCGCAAATCAACTGGAACTACAACTTGTGTTATCTGTCCTGTTTGTA
CTGTTACTGTTAGAGGAGATGAGAAATTTCATCAGCACTATATTCAAGAG
CTAGAAAAAGTCAAAGAACCCTTTGTTGGAGTTGACATTAAGAAGAAACA
ATATATGACTCGCTTACAGTGGCAGCGGCAACAAAGTAACGAAGAAAGTG
ATACTGAAATTGAGGAGCCAGCAAAATGTCTAGAAGACAGGACTAAAGAT
TTGAATAATGTTCGTAAAAGAAGATATGAGAGATATGCTAACATGTTTTT
AATGTCTATGAAACGTAATCAAGCACGTAACAACAATCACAATCAGACAA
CACATTCCACANGTCTATGAAACGTAATCAAGCACGTAACAACAATCAGA
CAACACATTCCACGTCATCCTCACAAAATACAATAGCAGAGAGCTCATCT
GTTTATGAAGTAGTGTCTTGTGCGGTGTGTAATGAATTTCTTGAAACAAG
TAACAGTAATAGACATCTATCGAAGTGTTTTGCTAAACATGATTACCAAT
TTGAGGTTTTCAGTAGTAGTGATGAGGAGCCAGATGATGAAGAGGAAGAT
GTTGACTTAGGTGAGAATTGGATGGATAACGCACATTTCCGAAGAGAAGG
GAATCTAACTCGGCTGGTAATGGAAGATGATGATGGGGACCTTGATATTG
ATGGTGATGAAGAAAATGCTCAGTTTGGAAAGCAACAGTATCTTTTTCTA
CCAGGCATTAGTACAATATTTGATATCTTAGGTGAAAGAGAAGTAAAATA
TTATCAGGTCTAACAAACCGATTTTGCAAACCATTACACGCCCCTTCTCA
CAGACCTGACTGAATAATCTTTTCAGCCAGTGGGGGTAATATTAAAGGTA
CGATATTTTGCAGTGAGGATTTGCTTACTGTATATCCAGGTATATCTTAT
AAATTTGCTTATTATTTTCAACAGGGACAAAAATAAGAGTATAATTTTCC
ACTGGGACGATATTTTGGCTATTCCAGCGGGAAGGGGTCCCACTAGGTCT
GTGAGAAGGGGGTGTCATTACCTTTAATCAAATTCATCAAGAGTCTGTAT
CTCAAGTCTTTTGAAACTCTTTGTAGCTTTAGTTTGATCTGTTTTGAAAA
ATGTTTTGTCCTTGACATTCAAATATTTAGATTCACTGAAAATGATGTTA
TTGTTCCAGTAACAACTGAAGGGTCTGACGAGGAACTTCTTTCAGCAGTA
ATTTTACGTGATGCAGTTAGCAATGGAGCTTGTTCTTCAAAGGGTGAGAA
TGGATCATTAACTACAAACAAACAAGAAAGTGATAAAGAGAATTCTGAGA
TAAACGTAAATCAAACTGTTGAGAAACAAGTGAGAAATATCTTATCTCAA
GCAGGGAATGACTCAAATAAACTCGTTGGATTATTATCTAAATATATAAA
CAAAACAGAAGAAAAATTAGAAAAAGACATTAGTAAGTGTCCAATTTGTA
TGGGACCCTATGTTAATCCTGCAGTATCAATCTCTTGTTGGCACACGTGT
TGTAGTGAATGTTGGCTTCGGGTTTTAGGTTCTAAAAAACTTTGTCCCAA
ATGTAATGATATTGTTGCTCCTTCTCAACTACGTAAAATTTATCTATGAC
GTTTTGTGTTTATATCTTAGAATTATATTTTACTTTCAGGTTTGTTAATA
TTTCGATACAATGAATAATAACTAAATTGAACAGAACTTAAAATTATTTA
CANTCGTTGACCCCTCATTCTATCGGGAATTTTATGGGGAATGAGATGAG
AAGGTTTATAAGGCTTGAGTAGGACTTTTAAATTTGGCTGAATTTTTAG

Coding sequence (CDS) from alignment at sc0000074:696733..698881-

>TCONS_00007212 ID=TCONS_00007212|Name=TCONS_00007212|organism=Clytia hemisphaerica|type=CDS|length=3798bp|location=Sequence derived from alignment at sc0000074:696733..698881- (Clytia hemisphaerica)
ATTCACTGAAAATGATGTTATTGTTCCAGTAACAACTGAAGGGTCTGACG
AGGAACTTCTTTCAGCAGTAATTTTACGTGATGCAGTTAGCAATGGAGCT
TGTTCTTCAAAGGGTGAGAATGGATCATTAACTACAAACAAACAAGAAAG
TGATAAAGAGAATTCTGAGATAAACGTAAATCAAACTGTTGAGAAACAAG
TGAGAAATATCTTATCTCAAGCAGGGAATGACTCAAATAAACTCGTTGGA
TTATTATCTAAATATATAAACAAAACAGAAGAAAAATTAGAAAAAGACAT
TAGTAAGTGTCCAATTTGTATGGGACCCTATGTTAATCCTGCAGTATCAA
TCTCTTGTTGGCACACGTGTTGTAGTGAATGTTGGCTTCGGGTTTTAGGT
TCTAAAAAACTTTGTCCCAAATGTAATGATATTGTTGCTCCTTCTCAACT
ACGTAAAATTTATCTATGAGTCATCCTCACAAAATACAATAGCAGAGAGC
TCATCTGTTTATGAAGTAGTGTCTTGTGCGGTGTGTAATGAATTTCTTGA
AACAAGTAACAGTAATAGACATCTATCGAAGTGTTTTGCTAAACATGATT
ACCAATTTGAGGTTTTCAGTAGTAGTGATGAGGAGCCAGATGATGAAGAG
GAAGATGTTGACTTAGGTGAGAATTGGATGGATAACGCACATTTCCGAAG
AGAAGGGAATCTAACTCGGCTGGTAATGGAAGATGATGATGGGGACCTTG
ATATTGATGGTGATGAAGAAAATGCTCAGTTTGGAAAGCAACAATGCCTT
CGACACGAAGAAAAACACAGCAAGATTTGGAACCTAAAACATTGAAAAGA
AAACCTCATAAGACAGCAGATACCATTATCTGTAGGCAGGAGGCAGATGA
TCGTAAAAAGCGCAAATCAACTGGAACTACAACTTGTGTTATCTGTCCTG
TTTGTACTGTTACTGTTAGAGGAGATGAGAAATTTCATCAGCACTATATT
CAAGAGCTAGAAAAAGTCAAAGAACCCTTTGTTGGAGTTGACATTAAGAA
GAAACAATATATGACTCGCTTACAGTGGCAGCGGCAACAAAGTAACGAAG
AAAGTGATACTGAAATTGAGGAGCCAGCAAAATGTCTAGAAGACAGGACT
AAAGATTTGAATAATGTTCGTAAAAGAAGATATGAGAGATATGCTAACAT
GTTTTTAATGTCTATGAAACGTAATCAAGCACGTAACAACAATCACAATC
AGACAACACATTCCACATTCACTGAAAATGATGTTATTGTTCCAGTAACA
ACTGAAGGGTCTGACGAGGAACTTCTTTCAGCAGTAATTTTACGTGATGC
AGTTAGCAATGGAGCTTGTTCTTCAAAGGGTGAGAATGGATCATTAACTA
CAAACAAACAAGAAAGTGATAAAGAGAATTCTGAGATAAACGTAAATCAA
ACTGTTGAGAAACAAGTGAGAAATATCTTATCTCAAGCAGGGAATGACTC
AAATAAACTCGTTGGATTATTATCTAAATATATAAACAAAACAGAAGAAA
AATTAGAAAAAGACATTAGTAAGTGTCCAATTTGTATGGGACCCTATGTT
AATCCTGCAGTATCAATCTCTTGTTGGCACACGTGTTGTAGTGAATGTTG
GCTTCGGGTTTTAGGTTCTAAAAAACTTTGTCCCAAATGTAATGATATTG
TTGCTCCTTCTCAACTACGTAAAATTTATCTATGAGTCATCCTCACAAAA
TACAATAGCAGAGAGCTCATCTGTTTATGAAGTAGTGTCTTGTGCGGTGT
GTAATGAATTTCTTGAAACAAGTAACAGTAATAGACATCTATCGAAGTGT
TTTGCTAAACATGATTACCAATTTGAGGTTTTCAGTAGTAGTGATGAGGA
GCCAGATGATGAAGAGGAAGATGTTGACTTAGGTGAGAATTGGATGGATA
ACGCACATTTCCGAAGAGAAGGGAATCTAACTCGGCTGGTAATGGAAGAT
GATGATGGGGACCTTGATATTGATGGTGATGAAGAAAATGCTCAGTTTGG
AAAGCAACAATGCCTTCGACACGAAGAAAAACACAGCAAGATTTGGAACC
TAAAACATTGAAAAGAAAACCTCATAAGACAGCAGATACCATTATCTGTA
GGCAGGAGGCAGATGATCGTAAAAAGCGCAAATCAACTGGAACTACAACT
TGTGTTATCTGTCCTGTTTGTACTGTTACTGTTAGAGGAGATGAGAAATT
TCATCAGCACTATATTCAAGAGCTAGAAAAAGTCAAAGAACCCTTTGTTG
GAGTTGACATTAAGAAGAAACAATATATGACTCGCTTACAGTGGCAGCGG
CAACAAAGTAACGAAGAAAGTGATACTGAAATTGAGGAGCCAGCAAAATG
TCTAGAAGACAGGACTAAAGATTTGAATAATGTTCGTAAAAGAAGATATG
AGAGATATGCTAACATGTTTTTAATGTCTATGAAACGTAATCAAGCACGT
AACAACAATCACAATCAGACAACACATTCCACATTCACTGAAAATGATGT
TATTGTTCCAGTAACAACTGAAGGGTCTGACGAGGAACTTCTTTCAGCAG
TAATTTTACGTGATGCAGTTAGCAATGGAGCTTGTTCTTCAAAGGGTGAG
AATGGATCATTAACTACAAACAAACAAGAAAGTGATAAAGAGAATTCTGA
GATAAACGTAAATCAAACTGTTGAGAAACAAGTGAGAAATATCTTATCTC
AAGCAGGGAATGACTCAAATAAACTCGTTGGATTATTATCTAAATATATA
AACAAAACAGAAGAAAAATTAGAAAAAGACATTAGTAAGTGTCCAATTTG
TATGGGACCCTATGTTAATCCTGCAGTATCAATCTCTTGTTGGCACACGT
GTTGTAGTGAATGTTGGCTTCGGGTTTTAGGTTCTAAAAAACTTTGTCCC
AAATGTAATGATATTGTTGCTCCTTCTCAACTACGTAAAATTTATCTATG
AGTCATCCTCACAAAATACAATAGCAGAGAGCTCATCTGTTTATGAAGTA
GTGTCTTGTGCGGTGTGTAATGAATTTCTTGAAACAAGTAACAGTAATAG
ACATCTATCGAAGTGTTTTGCTAAACATGATTACCAATTTGAGGTTTTCA
GTAGTAGTGATGAGGAGCCAGATGATGAAGAGGAAGATGTTGACTTAGGT
GAGAATTGGATGGATAACGCACATTTCCGAAGAGAAGGGAATCTAACTCG
GCTGGTAATGGAAGATGATGATGGGGACCTTGATATTGATGGTGATGAAG
AAAATGCTCAGTTTGGAAAGCAACAATGCCTTCGACACGAAGAAAAACAC
AGCAAGATTTGGAACCTAAAACATTGAAAAGAAAACCTCATAAGACAGCA
GATACCATTATCTGTAGGCAGGAGGCAGATGATCGTAAAAAGCGCAAATC
AACTGGAACTACAACTTGTGTTATCTGTCCTGTTTGTACTGTTACTGTTA
GAGGAGATGAGAAATTTCATCAGCACTATATTCAAGAGCTAGAAAAAGTC
AAAGAACCCTTTGTTGGAGTTGACATTAAGAAGAAACAATATATGACTCG
CTTACAGTGGCAGCGGCAACAAAGTAACGAAGAAAGTGATACTGAAATTG
AGGAGCCAGCAAAATGTCTAGAAGACAGGACTAAAGATTTGAATAATGTT
CGTAAAAGAAGATATGAGAGATATGCTAACATGTTTTTAATGTCTATGAA
ACGTAATCAAGCACGTAACAACAATCACAATCAGACAACACATTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004043XLOC_004043Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007212-proteinTCONS_00007212-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007212-exon-sc0000074-1575043694:698222..698881TCONS_00007212-exon-sc0000074-1575043694:698222..698881Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1575043694:697845..698168TCONS_00007212-exon-sc0000074-1575043694:697845..698168Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1575043694:696733..697401TCONS_00007212-exon-sc0000074-1575043694:696733..697401Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1510915933:698222..698881TCONS_00007212-exon-sc0000074-1510915933:698222..698881Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1510915933:697845..698168TCONS_00007212-exon-sc0000074-1510915933:697845..698168Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1510915933:696733..697401TCONS_00007212-exon-sc0000074-1510915933:696733..697401Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1491911889:698222..698881TCONS_00007212-exon-sc0000074-1491911889:698222..698881Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1491911889:697845..698168TCONS_00007212-exon-sc0000074-1491911889:697845..698168Clytia hemisphaericaexon
TCONS_00007212-exon-sc0000074-1491911889:696733..697401TCONS_00007212-exon-sc0000074-1491911889:696733..697401Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000074supercontigsc0000074:696733..698881 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
86.9272	79.0724	31.1567	22.5908	20.2557	15.381	12.7634	13.4782	9.15825	9.3077	12.0253	5.63305	8.92163	8.47065	10.2522	10.8918	11.6778	13.1202	6.08963	5.12677	7.72943	8.02263	83.3676	63.1235	9.97253	12.358	9.20818	9.77157	48.795	63.0365
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR031824RNF220_mid
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0090263positive regulation of canonical Wnt signaling pathway
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090263 positive regulation of canonical Wnt signaling pathway
biological_process GO:0016567 protein ubiquitination
Blast
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BLAST of TCONS_00007212 vs. Swiss-Prot (Human)
Match: RN220 (E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens GN=RNF220 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.930e-22
Identity = 62/166 (37.35%), Postives = 84/166 (50.60%), Query Frame = 2 
Query:  968 QFGKQQFTENDVIVPVTTEGSDEELLSAVILRDAVSNGACSSKGENGSLT--TNKQESDKENSEINVNQTVEKQVRNILSQAGNDSNKLVGL--LSKYINKTEEKLEK-DISKCPICMGPYVNPAVSISCWHTCCSECWLRVLGSKKLCPKCNDIVAPSQLRKIYL 1450
            ++GK Q+TE DVI P T E    E      LR AV NG   S       +   + +     N E +  + ++K  +N   +   + + +     L   + + E +L + D  KC ICM  Y  P  SI CWH  C ECWLR LG+KKLCP+CN I AP  LR+IYL
Sbjct:  403 EYGKPQYTEADVI-PCTGE-EPGEAKEREALRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL 566
The following BLAST results are available for this feature:
BLAST of TCONS_00007212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN2205.930e-2237.35E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens... [more]
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