TCONS_00007212-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00007212-protein
Unique NameTCONS_00007212-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00007212-protein ID=TCONS_00007212-protein|Name=TCONS_00007212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MPSTRRKTQQDLEPKTLKRKPHKTADTIICRQEADDRKKRKSTGTTTCVI
CPVCTVTVRGDEKFHQHYIQELEKVKEPFVGVDIKKKQYMTRLQWQRQQS
NEESDTEIEEPAKCLEDRTKDLNNVRKRRYERYANMFLMSMKRNQARNNN
HNQTTHSTSSSQNTIAESSSVYEVVSCAVCNEFLETSNSNRHLSKCFAKH
DYQFEVFSSSDEEPDDEEEDVDLGENWMDNAHFRREGNLTRLVMEDDDGD
LDIDGDEENAQFGKQQFTENDVIVPVTTEGSDEELLSAVILRDAVSNGAC
SSKGENGSLTTNKQESDKENSEINVNQTVEKQVRNILSQAGNDSNKLVGL
LSKYINKTEEKLEKDISKCPICMGPYVNPAVSISCWHTCCSECWLRVLGS
KKLCPKCNDIVAPSQLRKIYL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_004043XLOC_004043Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00007212TCONS_00007212Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR031824RNF220_mid
IPR001841Znf_RING
Vocabulary: Biological Process
TermDefinition
GO:0090263positive regulation of canonical Wnt signaling pathway
GO:0016567protein ubiquitination
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090263 positive regulation of canonical Wnt signaling pathway
biological_process GO:0016567 protein ubiquitination
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 368..407
e-value: 3.6E-10
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 301..322
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 359..413
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 297..419
e-value: 1.3E-12
score: 46.8
IPR031824E3 ubiquitin-protein ligase RNF220, middle domainPFAMPF15926RNF220coord: 245..299
e-value: 6.1E-7
score: 29.2
coord: 47..224
e-value: 5.9E-8
score: 32.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 369..408
score: 10.07
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 368..411
e-value: 3.45621E-6
score: 43.2032

Blast
[Close]
BLAST of TCONS_00007212-protein vs. Swiss-Prot (Human)
Match: RN220 (E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens GN=RNF220 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.491e-22
Identity = 62/166 (37.35%), Postives = 84/166 (50.60%), Query Frame = 0 
Query:  261 QFGKQQFTENDVIVPVTTEGSDEELLSAVILRDAVSNGACSSKGENGSLT--TNKQESDKENSEINVNQTVEKQVRNILSQAGNDSNKLVGL--LSKYINKTEEKLEK-DISKCPICMGPYVNPAVSISCWHTCCSECWLRVLGSKKLCPKCNDIVAPSQLRKIYL 421
            ++GK Q+TE DVI P T E   E       LR AV NG   S       +   + +     N E +  + ++K  +N   +   + + +     L   + + E +L + D  KC ICM  Y  P  SI CWH  C ECWLR LG+KKLCP+CN I AP  LR+IYL
Sbjct:  403 EYGKPQYTEADVI-PCTGEEPGEAKEREA-LRGAVLNGGPPSTRITPEFSKWASDEMPSTSNGESSKQEAMQKTCKNSDIEKITEDSAVTTFEALKARVRELERQLSRGDRYKCLICMDSYSMPLTSIQCWHVHCEECWLRTLGAKKLCPQCNTITAPGDLRRIYL 566
The following BLAST results are available for this feature:
BLAST of TCONS_00007212-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN2201.491e-2237.35E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens... [more]
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