TCONS_00007076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007076
Unique NameTCONS_00007076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007076 ID=TCONS_00007076|Name=TCONS_00007076|organism=Clytia hemisphaerica|type=transcript|length=1792bp
AGAAAAACAGTagaaataaaagcaaaaaaatgatCAAGATATCCACCGCA
GGAGGTTATGATCAACTGGTCTACACTGACTTGCCAGAATGTAATTATAC
AGAAGGAGCAAACATTGGAATAGAAAAAATTGACAGCTCAGACTGTGTGG
TAGTTGCAACACACGCATGTGGAGTCAATTATGCAGACTGTATCATTCGG
TGGGGTTTGTACAAATCTGCAAAAGATCTAGTAGGCTGGCCAATCACACC
TGGCTTCGAGTTCAGTGGTACCATTACACACGTTGGGGAGAATGTAACAG
ATTACAAGATCGGGGATAAAGTTGCTGGAGTCAGTTTATTTGGATCTTAT
TCCAAAAGGCTCAAAGTGCCTGCTTACCAGGTTCGCCATGTACCAGAAAA
CATTTCCATGTCAGAAGCAGCTGGATTTCTAACAGTTGGATTAACCGCGC
ATTATGCTATATTTGAGTTGTGTAAACTGCGGAAGGGTGATTACGTATTG
GTTCACTCTGCGGCTGGTGGCGTTGGATCCATGCTGGTTCAAATGCTAAA
GAATAAGATTGGCTGCCATGTTGTGGGTGTTGTTGGTCAAACACATAAAG
TGGAGATGGCAAAGCAGCTTGGCTGTGATGATGTGATAGACAAGTCCACT
CAAGATCTGTGGTCAACCGCAGCTGATCTTACAGTTAATGGTTACAAAGC
TATCTTTGATGCAAATGGTGTTGAAACGCTTCAACAAAGTTACAACAATC
TTGCACGAGGAGGAAGGCTTGTGACGTATGGTTACGCCACTATGATGCCG
AAATCATCGGAAGTTAGTTCGGGAGCGATCAAAACCACAGATTGGATGAA
ACTTCTATGGAAGTATAAAACAACACCCACCTTCAACCCTCTTGATATGA
CGTCAGAAAACAAAAGCGTGATGGCGTTCAACTTGAGTTATATGTTCAAT
GAGAAGGAACTATTGAAAGAACTTTTTACCGGGCTTTTCCAGTGGATATC
CGATGGATCCCTCAAAGTCGCCAAAGTGACGGAGTTCTTGATGTCGGATG
CGGGTGGAGCTCATCGCGCGCTCGAGTCTGGTAGCACGGTCGGTAAATTG
GTCCTGCTAACGGAAGGAGATAAACCCATTCAGGAAATGGTAGTtgagga
aaataaaaatgaaggaaaaaatcatgttgaATCAGACGAAACTAAGCTAC
TCTGATGAACAATGGTAGATTTATCGTTGGCACCTTTGCCCCCGCGTTTG
CGCCTTAGTCTGCCAATAGCAAGAACCAATTTTAGCAAAATGAAGCTTTT
GCAAGACTTCCTTAAACCTGATTATCGCTGATTCGTGATTCTAAAAGACG
ATAGCACACAGATTAAAAGTGGTTCTTCcacgaaaaataaaattttaatt
ttgatacaCAATATATTAGTTATGAATTTTAGTTATGAATTTTAGTTTAC
ACCTGATTATACATATATCAAGATAATGAATTTTGTTAGTATTCCACCTA
TTAGACTTTACAAAACTCTCCTTTGCAAGATAAGAACCGCGGCACACGGC
aaggtttttcaaaaaagtaaaaattgcaAATGGTAGATGAGGGACTAGGG
TGATCACTTTTTATTCAATCTAAATTTGGTTCATTCCTTCTtcttcgatt
ttcgaaaacaacacCACTGCCTTACCCATGATGAATGCCACTTTGGTAGA
ACAACTTCACATAAATTTTAGCGAAATATAATAGAGAAAATATGTAGTAA
TTTTATGTTTTCAGTTTTATAATTGTAAAAAATCTAGGCATT
Run BLAST on NCBI

transcript from alignment at sc0000073:468604..473542-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007076 ID=TCONS_00007076|Name=TCONS_00007076|organism=Clytia hemisphaerica|type=transcript|length=4939bp|location=Sequence derived from alignment at sc0000073:468604..473542- (Clytia hemisphaerica)
AGAAAAACAGTAGAAATAAAAGCAAAAAAATGATCAAGATATCCACCGCA
GGAGGTTATGATCAACTGGTCTACACTGACTTGCCAGAATGTAATTATAC
AGAAGGAGCAAACATTGGAATAGAAAGTAAGATTTGTGTTTATACTACAT
ATCAAGGGTTTTAATATTTGATAGAATTCAAATTAACTAATATAGGTGAT
CATGACACTATGAGATGATTTTTTACTTGTTCATTTTAATTTTTATTTGC
CAAATTTATTTGCATAATTTCCTACTTATAATATCCCACTTTTGAATTTA
TTTCCAACAAGCACAAAAACGCCATTTTATTTGAATTCTATCAAAAGTTA
CAGCCCTTTTACTTTCAGACAGACTTAATTGGATAATGAAGATAGTGGAT
AGATAATAATGATAATGAGAACGTTTCTTGGGGAATAATTTTGCTTTAGT
TGGACAAAAATATCGAATTGCATTATCGTGTTTATTTCAAGAAACTATAC
TATTATCATTTAGAAATTGACAGCTCAGACTGTGTGGTAGTTGCAACACA
CGCATGTGGAGTCAATTATGCAGACTGTATCATTCGGTGGGGTTTGTACA
AATCTGCAAAAGATCTAGTAGGCTGGCCAATCACACCTGGCTTCGAGTTC
AGTGGTACCATTACACACGTTGGGGAGAATGTAACAGATTACAAGATCGG
GGATAAAGTTGCTGGAGTCAGTTTATTTGGATCTTATTCCAAAAGGCTCA
AAGTGCCTGCTTACCAGGTTCGCCATGTACCAGAAAACATTTCCATGTCA
GAAGCAGCTGGATTTCTAACAGTTGGATTAACCGCGCATTATGCTATATT
TGAGTTGTGTAAACTGCGGAAGGGTGATTACGTATTGGTTCACTCTGCGG
CTGGTGGCGTTGGATCCATGCTGGTTCAAATGCTAAAGAATAAGATTGGC
TGCCATGTTGTGGGTGTTGTTGGTCAAACACATAAAGTGGAGATGGCAAA
GCAGCTTGGTTTGTCTCATAAACACATTTACATTTAAAGATCATAATTTG
GCAGATGGATGATATTACCATAATGAATTTAATACAGTCTCTCTGATGAT
GAGATCGACTGCAAACAAACAGATCTGGCATAATAGCAATATGTCCAACA
CATTCCTGATTGTTAATTGTCTTTGTCTGGTTTTGTCTCTGTGATGCATA
TTAGAAACCTTGGTTTTCTCTTACGAATTATGAGATAGGAGAACTAATTT
GTATCTATTACAACAAATTTAATGATATTTTATCTGATTCATTTACCAGG
CTGTGATGATGTGATAGACAAGTCCACTCAAGATCTGTGGTCAACCGCAG
CTGATCTTACAGTTAATGGTTACAAAGCTATCTTTGATGCAAATGGTGTT
GAAACGCTTCAACAAAGTTACAACAATCTTGCACGAGGAGGAAGGCTTGT
GACGTATGGTAAGAATTAAACAGAGCATTCCCCTTTGAAGATACAGGATT
TTCCTTTGAAAGTACAGAGGATTTCCCGTTGAAAATACAGAGAATTTTCC
TTTAAGAATATAGAGGATTTCCTTTGGAAATACATAGGATTTTCCCTTAA
GAATACATAGGATTTTTCTTTTGAAAATACATAGGATTTTCCTTGGAAAA
TACATAGGATTTTCCTTGGAAAATAAAGAATGTTCTCCTTTGATTCAGAC
GATATTCCTTTGAAAATACAAACATTTTGCTTTGAAAATGCAAAACACTT
TCTTTTGAAACTCTTTTTTTAAACCCATACCGATTATCATCTTACAGGTT
ACGCCACTATGATGCCGAAATCATCGGAAGTTAGTTCGGGAGCGATCAAA
ACCACAGATTGGATGAAACTTCTATGGAAGTATAAAACAACACCCACCTT
CAACCCTCTTGATGTAAGTGATTGGATGTCCTTTTCTCTACTGACTAACT
GCTTCAAAAAGGTGTTTTTAGCCGCTTCTGATTTGTACTTGAATAATTAT
TTTATCTTTGAGTCTATAGAGATGCTAGACATTTTCCGGGTTCTTTTGAG
ATGACTTGGCCTAAAAAAGTGTATAATGCGTCGGAGTCATATCCATTGAA
GGAGAGCCTCGAGGATCTTTTCACTCTGTCTCTTTTTTTGAAAGCCAAAT
AAACATCATTGTAATAAACCGATAATACTTAGCTTTGCTTGAATAATTTG
AATGATCTCTTTGAGTCTATGAAGATGTTATACATTGTCTGGTTCTTTTG
ATATAAATCTAAAATCTACATAAAATTAACATAGAAATTAACATAAAAAA
ACATGCGTATTTGTAATAAAAGTAGCATGAAGGAAGTTTAGAAGTGTGTT
TTACTAGACTCGTTTCTTCCGCAACGAAGAAACTCTATAAGTCTATCCCT
AGAATCGATATATGCTTTAAGATATATATTTGGCATAACGTACGAACAAG
GTTGATACTCGTAGCTTGAAATGTTGTCCTCCTTCACTGGTTACATGGAA
AGCGATAAGATTTAACGTGTNGTTACAACAATCTTGCACGAGGAGGAAGG
CTTGTGACGTATGGTAAGAATTAAACAGAGCATTCCCCTTTGAAGATACA
GGATTTTCCTTTGAAAGTACAGAGGATTTCCCGTTGAAAATACAGAGAAT
TTTCCTTTAAGAATATAGAGGATTTCCTTTGGAAATACATAGGATTTTCC
CTTAAGAATACATAGGATTTTTCTTTTGAAAATACATAGGATTTTCCTTG
GAAAATACATAGGATTTTCCTTGGAAAATAAAGAATGTTCTCCTTTGATT
CAGACGATATTCCTTTGAAAATACAAACATTTTGCTTTGAAAATGCAAAA
CACTTTCTTTTGAAACTCTTTTTTTAAACCCATACCGATTATCATCTTAC
AGGTTACGCCACTATGATGCCGAAATCATCGGAAGTTAGTTCGGGAGCGA
TCAAAACCACAGATTGGATGAAACTTCTATGGAAGTATAAAACAACACCC
ACCTTCAACCCTCTTGATGTAAGTGATTGGATGTCCTTTTCTCTACTGAC
TAACTGCTTCAAAAAGGTGTTTTTAGCCGCTTCTGATTTGTACTTGAATA
ATTATTTTATCTTTGAGTCTATAGAGATGCTAGACATTTTCCGGGTTCTT
TTGAGATGACTTGGCCTAAAAAAGTGTATAATGCGTCGGAGTCATATCCA
TTGAAGGAGAGCCTCGAGGATCTTTTCACTCTGTCTCTTTTTTTGAAAGC
CAAATAAACATCATTGTAATAAACCGATAATACTTAGCTTTGCTTGAATA
ATTTGAATGATCTCTTTGAGTCTATGAAGATGTTATACATTGTCTGGTTC
TTTTGATATAAATCTAAAATCTACATAAAATTAACATAGAAATTAACATA
AAAAAACATGCGTATTTGTAATAAAAGTAGCATGAAGGAAGTTTAGAAGT
GTGTTTTACTAGACTCGTTTCTTCCGCAACGAAGAAACTCTATAAGTCTA
TCCCTAGAATCGATATATGCTTTAAGATATATATTTGGCATAACGTACAA
ACAAGGTTGATACTCGTAGCTTGAAATGTTGTCTTCCTTCACCACTAGTT
ACATGGAAAGCGATAAGATTTAACGTGTTTTTTTTATACAATATTTGTTC
ACGCTCTATCCGTTTATATTTAGTACTGTGACATTATCGAGTAAATATTT
TTGACGATGTTTTCATTGAAAGTGGTCTTAAAGAGGATAAGTCCTTCCGG
ACTAACTTATAAGGATATTTATCATGTTTACTTCTACAAAGCGATTTTAT
AAGAACTTTCATTTCTACTCCATGTTTTCCCTTTCATATAAGGAAGCTCC
TAAACAATTGTTACAATTATAAGCTACTCTTTAAAATTTGATGTTTCGAA
ATTAATTTATGGAAATTTAGTTTTAAATTTCAATACGGTCCCGTCTAAAT
TTCACTTCACATCTTAAGGGCTTTTCTTGACGAAGAGGGGTGTCCAAATT
GAGTCAAAAATTGTTGATGTTGTTTTTGTTTTTGTTTACATAGATGACGT
CAGAAAACAAAAGCGTGATGGCGTTCAACTTGAGTTATATGTTCAATGAG
AAGGAACTATTGAAAGAACTTTTTACCGGGCTTTTCCAGTGGATATCCGA
TGGATCCCTCAAAGTCGCCAAAGTGACGGAGTTCTTGATGTCGGATGCGG
GTGGAGCTCATCGCGCGCTCGAGTCTGGTAGCACGGTCGGTAAATTGGTC
CTGCTAACGGAAGGAGATAAACCCATTCAGGAAATGGTAGTTGAGGAAAA
TAAAAATGAAGGAAAAAATCATGTTGAATCAGACGAAACTAAGCTACTCT
GATGAACAATGGTAGATTTATCGTTGGCACCTTTGCCCCCGCGTTTGCGC
CTTAGTCTGCCAATAGCAAGAACCAATTTTAGCAAAATGAAGCTTTTGCA
AGACTTCCTTAAACCTGATTATCGCTGATTCGTGATTCTAAAAGACGATA
GCACACAGATTAAAAGTGGTTCTTCCACGAAAAATAAAATTTTAATTTTG
ATACACAATATATTAGTTATGAATTTTAGTTATGAATTTTAGTTTACACC
TGATTATACATATATCAAGATAATGAATTTTGTTAGTATTCCACCTATTA
GACTTTACAAAACTCTCCTTTGCAAGATAAGAACCGCGGCACACGGCAAG
GTTTTTCAAAAAAGTAAAAATTGCAAATGGTAGATGAGGGACTAGGGTGA
TCACTTTTTATTCAATCTAAATTTGGTTCATTCCTTCTTCTTCGATTTTC
GAAAACAACACCACTGCCTTACCCATGATGAATGCCACTTTGGTAGAACA
ACTTCACATAAATTTTAGCGAAATATAATAGAGAAAATATGTAGTAATTT
TATGTTTTCAGTTTTATAATTGTAAAAAATCTAGGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003959XLOC_003959Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007076-exon-sc0000073-1575043694:473417..473542TCONS_00007076-exon-sc0000073-1575043694:473417..473542Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1575043694:472535..473029TCONS_00007076-exon-sc0000073-1575043694:472535..473029Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1575043694:472085..472243TCONS_00007076-exon-sc0000073-1575043694:472085..472243Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1575043694:471630..471745TCONS_00007076-exon-sc0000073-1575043694:471630..471745Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1575043694:468604..469499TCONS_00007076-exon-sc0000073-1575043694:468604..469499Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1510915933:473417..473542TCONS_00007076-exon-sc0000073-1510915933:473417..473542Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1510915933:472535..473029TCONS_00007076-exon-sc0000073-1510915933:472535..473029Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1510915933:472085..472243TCONS_00007076-exon-sc0000073-1510915933:472085..472243Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1510915933:471630..471745TCONS_00007076-exon-sc0000073-1510915933:471630..471745Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1510915933:468604..469499TCONS_00007076-exon-sc0000073-1510915933:468604..469499Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1491911889:473417..473542TCONS_00007076-exon-sc0000073-1491911889:473417..473542Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1491911889:472535..473029TCONS_00007076-exon-sc0000073-1491911889:472535..473029Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1491911889:472085..472243TCONS_00007076-exon-sc0000073-1491911889:472085..472243Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1491911889:471630..471745TCONS_00007076-exon-sc0000073-1491911889:471630..471745Clytia hemisphaericaexon
TCONS_00007076-exon-sc0000073-1491911889:468604..469499TCONS_00007076-exon-sc0000073-1491911889:468604..469499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:468604..473542 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.66661	9.55089	11.9511	12.7658	0.819235	0.615253	5.82839	5.80474	5.94851	8.03439	5.28812	3.43676	5.77618	3.86017	7.98539	9.23699	10.4377	9.78831	2.61236	4.83978	4.15075	5.1806	4.68376	4.90441	6.19397	7.88829	4.76055	2.95764	7.61125	5.03931
Blast
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BLAST of TCONS_00007076 vs. Swiss-Prot (Human)
Match: VAT1 (Synaptic vesicle membrane protein VAT-1 homolog OS=Homo sapiens GN=VAT1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 2.674e-37
Identity = 98/323 (30.34%), Postives = 155/323 (47.99%), Query Frame = 3 
Query:  162 HACGVNYADCIIRWGLYKSAKDLVGWPITPGFEFSGTITHVGENVTDYKIGDKVAGVSLFGSYSKRLKVPAYQVRHVPENISMSEAAGFLTVGLTAHYAIFELCKLRKGDYVLVHSAAGGVGSMLVQMLKNKIGCHVVGVVGQTHKVEMAKQLGCDDVIDKSTQDLWSTAADLTVNGYKAIFDANGVETLQQSYNNLARGGRLVTYGYATMM--PKSSEVSSGAIKTTDWMKLLWKYKTTPTFNPLDMTSENKSVMAFNLSYMFNEKELLKELFTGLFQWISDGSLKVAKVTEFLMSDAGGAHRALESGSTVGKLVLLTEGDK 1124
             ACG+N+AD + R GLY     L   P+TPG E +G +  VGE V+D K GD+V  ++  G + + + VP+ Q   +PE ++  EAA  L   +TA+  +F+   L+ G  VLVH AAGGVG   VQ+ +      V G    + K E  K+ G    ID  T D       ++  G   + D  G     + YN L   G++VTYG A ++  PK + +   A+  T W +         +   L +   N++V  F+L Y+  E EL+  +   L    + G +K    + +       A + ++    VGK++L+   +K
Sbjct:   84 RACGLNFADLMARQGLYDRLPPL---PVTPGMEGAGVVIAVGEGVSDRKAGDRVMVLNRSGMWQEEVTVPSVQTFLIPEAMTFEEAAALLVNYITAYMVLFDFGNLQPGHSVLVHMAAGGVGMAAVQLCRTVENVTVFGTASAS-KHEALKENGVTHPIDYHTTDYVDEIKKISPKGVDIVMDPLGGSDTAKGYNLLKPMGKVVTYGMANLLTGPKRNLM---ALARTWWNQF--------SVTALQLLQANRAVCGFHLGYLDGEVELVSGVVARLLALYNQGHIKPHIDSVWPFEKVADAMKQMQEKKNVGKVLLVPGPEK 391
The following BLAST results are available for this feature:
BLAST of TCONS_00007076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAT12.674e-3730.34Synaptic vesicle membrane protein VAT-1 homolog OS... [more]
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