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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006971 ID=TCONS_00006971|Name=TCONS_00006971|organism=Clytia hemisphaerica|type=transcript|length=407bp
agggggggggggggggggggcagtgggtttaccaactgacggtatgtgcg
gcgaaaaaattggcttttagaatcgcatcGAATCCGCGAGTTATCTAGCT
GTAATTTAGATAAAAATCTGCTTACCCCATCCAGATTCGAACATAAACTC
TTTCATCGCAATCAGGTGCTTGGTCCCAGACCTCAAAAACTTTCCATCTT
AATCTAATAAATGTTCCTGGTTGTGTTATAATGTTGTACGTTGATGTATC
TTGTGCAAGATAATTATTAGGATATCGTGGCGATTGAAATTCACCGGTCG
AGTTTGTTAGAGTGACGTCAAACGAAACTGCGTCGGTGAATTGTATTGTA
TTTAGTATGAGAATAAATACATTGATTCCATGTTGtagatttttcataat
tttttct Run BLAST on NCBI transcript from alignment at sc0000072:668917..678476- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006971 ID=TCONS_00006971|Name=TCONS_00006971|organism=Clytia hemisphaerica|type=transcript|length=9560bp|location=Sequence derived from alignment at sc0000072:668917..678476- (Clytia hemisphaerica)
AGGGGGGGGGGGGGGGGGGGCAGTGGGTTTACCAACTGACGGTATGTGCG
GCGAAAAAATTGGCTTTTAGAATCGCATCGAATCCGCGAGTTATCTAGCT
GTAATTTAGATAAAAATCTGCTTACCCCATCCAGATTCGAACATAAACTC
TTTCATCGCAATCAGGTGCTTGGTCCCAGACCTCAAAAACTTTCCATCTT
AATCTAATAAATGTTCCTGGTTGTGTTTTAATATTGTATGTGGATGTATC
ATTTGCACGAAATTTTTCTGGATATTGAGGTGATTGAAATTCACCGGTTG
TGTTTGTTAGAGTAACATTTAATGATACAGCGTCGGTGAAATAGATTGTG
TTTAGTAAGAGAATCAATAAGGCAATTCCATTTTGTATTTCATTCATTGT
TTAGTCACTAAAATGAAAAAATATATATTCATGAAGGTCCATGATAATTC
TCCTGGTCTGAATACCAGCTGCAGATCTGGGGAGGGTTAAAAACTACCTT
AAGAGAAGAAATTTTGACGAGAAGAAATTTTGGCGAATGGAGCCCATTTT
TGTTCAATATTTTGGCTGAAAAAAGAGGGAGGAAAGGGTTTGTAGGAGAA
ATAGAGACCAAATTGTAAAAAAAAATTAAATTTGTTGACAATTTATTTTG
GCGAAATCTTTAGGCAATTCGCCAAATTCGCCAAAATTTCTTCCTTTAAC
CTAAACACCAGCGTGTCTCAAAATGTCAAAACACGTCTCCCTAGAATCTA
AGGTCCATGTAACGTTTAAACAACGTTTGATGCCAGCCGGGATGGTGATA
GTTTTCCACACACCCATTACCACAATATTCCCCTCTTAGAACCTTAGAAT
CAGCACTGTATTAACCATAATTTTGATTACCGGACTTTTCCCCGACTGGC
TTTTCCCCGATTGACGTTTCCCCAACAGGCATTTCCCCGGCGCACAGAAA
TGCCCGTCGGGGAAACTTCCAGTTACCAAAATCTCTATTCGTTGAGCCAC
AGAGTTAGTAAACAGCTATGAAAAAAAGGATTTCTAAGAATAGTTGTAGA
AATTCTAAATAAAAACTTTTCAAAAGAAGCTTTAGTAGGGTGTAAATTTT
GATGGTTATTTTTGGTTGAAGTGGTTGAAGGTTTAGGTTGAGAAATTAAA
GAATTACAAACCCCACAAAACGGATCAAGAATAATATATTAGTCAGACAT
ACAAAATTACAAATAAATACAAAATCATATTTTCCAAAAAATAGAGTTTC
TAATATTGTACAAAATTAAATGAAAATATTTTCAAGTTTTTAACTTGTTT
TTAAAATGTTGCTGTAAGAATCTTCAATCCTTGATATCAAGGATATTACC
GTTGTTTATAAATTATGATATGGCTACGTTCATACAGTGGAGTCCCAACT
GGCACACAACGTTGTTTCATTTCATTTAACGTTATATGGACGTTATGAAC
ATTAGATAAACGTTGAAACAACGTTGTGTGCCAGCTGGGGTCTCCATAAA
ATAACTTGTTCGAGTTTAGGAAATTTGTTTATTAGGCTTTAGTAAAGAAA
GGGACCATAAAACTTTTTCGCGTTAAGGAGACATTTAAGCTATAGAGGTT
CGAATAAAAGCTCTATTGTATTATTAAATGATCATTAACAGGCCTACCAT
GAGTATCGCAGTACAGGGTGTCCCGAAAAAAAGTATCGAGTCGAACCACT
TTTATAGAAAGAAAGTTCCTGTGTGCGTTTCACTACATTTGCAATGTTTA
TCAAAGTTTCTCTCTGTGTCATATTAATTGTCATGAAACATCTTTTATGA
ATAACTTCTACAAAAAAACAATTCTCAATGAAAATTCTTCTTTTTAATCA
TAATGACTGTTGTAAAAACAATTATTTTGGTTATATTTTCTTACATTTTG
TGAAAGACACGCAACAATCTTCTACTCAGAATCATGTTCGAACTCGATAC
TTTTTTTCGGGACACCCTGTACATGAAGATTACACTGTGGTGAAAGATCG
CCATTCCACTCAGCGCCCATTCAATGAGAAAAAAGCAACCATGACAATCA
TCCATGAACTTGGACATTGGTCTAACCATTCAAACCAAACTTAACAAACG
TAGAAAATATGAAAAGAGTAATGTTCCACGCACTCTTGAGTCAGAGAAGA
TTCATTTCATTCATTAATATTCAATGTGCCAGAGGAATGGACCTTATCGG
AGTTTTTGATTTTCCTAAAAAATACATGCATTGTGGGATCGTTTCGAGGG
TATAACAATAGAAATCTTTTTGGAATTCCTCGAGGGAATTCTATTGTAAT
CAACCAGAAACAATCCCACAATACATCGCTTTTTTTAAAAAATCAAAAAC
TCCGATAAGATCTATTGTAAAAAAAAAAAAGATGTTCCCATCGAAACTTC
GCCTTACATAAATCCAACCTTTCGTTCCGTATCTACTCCTCCCATCGAGT
CATTATAGGAGGGTGGAAACGGGGGCGGTCCATCTCCAGGGGCGGTTGGT
GATTGTGGTGGTGCAGAGGGCGATTGGTAAGGGGCGGAGGCTGAATGTTG
AGTTGGTGGTGTTGCACCCATAGGAGGTGGAGATTGTTCAAATGATGAAT
AATTCTTGTATGTAGGTGGTTGGTATGGAGAAGGATTCTCACTTTGTGGA
GCAGTGTAGCCTGATAAAAAAGAATTCAAAAACTATTTTAAACCGTCATT
TTGGGATCGACTATGCAAAGTTAATGTGAAGCCATGAGGCATTAATTCCT
GTAGCGTAGCCAAGAGGGGCGCAAAATTTGTGTTGGAGAGCAGATTTTTA
TGACACTGTAATTATCTATTCATTTTAATAAAAAAATAATTATAAAGTCA
TAAAAATCTGCTCTCCTACACAAATTTTGCGCCCCTCTTGGCTACGCTAC
TGTTAATTCAAGAAAAACAAAAACTTGGGGGAGGGGCTTTCTTGTTCAGA
ATAGATATTCCACATTGAGTTATGTGTAGAAAGCTAAGATATCAGAGAAG
ATATTTATATTCGTACTATGAATCTCAGTATTTGTCAAAGTAAAGATGCA
GTACAATACCGGCCATAATATTTGAGAAAAAACGGAAATCCCAACCGGAA
TCTTATAGCCACAATCGATTTGGAAGCACTCAATTTAGGTTGGAAGGGTA
GAGTTTTAACACTTACTTACGACCTTGGGATCTCAGGATCCAAAAGTTCA
AGAACGGTCCAATAGGAATATGCCTGGAAGTCTATAAACCCCACCCGAAC
TTAAATATTCGATTACATCTAACCAATGGCCCAAAAGCGATATTCTCGCC
CGAGCTTTAAAATGCTAAAAACGAGGAATTAACCAAAATTCCCAATATAT
ATTGACCGATATTATAGATATAGTGAATTCTCTATATCTCGAACACGCAC
GGGGGTCACAAATTTGTTTGAGTTAAGGAAATTTCATTGTTAACTGAAGG
GATCATAAAACTTGATGTAGTAAAGGAAACTTTTCGAGTTATTGTGGTTC
GAGTTAAAGAGACTCAACTATAGTACTTTACTTTAATTGCATTAATTTTC
GCGGATGACACTATTGTGTGACAATATTTTCACGATCTTTCCTTGCGTTT
TACTGTCAAATCATTCATGTTGGTTGTTGAAATACGCATTATTAGCGTCT
CTGTGGTGTCTGAGTAAGCATTTCTTTCCCAAATTTCCATTGGGACTCAA
TTTCGCGCATGACACCCAAATCCGCGAAATCCGCGAAATTTAATCCCCCT
AAAATTTATCTCATAAAAGTACTTACTAGCAACGACGATTCCCGGTGGAT
TAAAGGCTGGTGAAACAGTCTCCGGCTCGTCTTGTTTGATCATATTATCT
TTCACTCCATAACAACAGTTCAAACAATTCCATCTTGCTTTTTTACATTT
CCATTTAAACCATCTTCGTTTTATATATATGATGAATAATGTTACGACTC
CTAAGATGACCAGAAAGACAATCCAACCTGTCGCCAGACCACCACTTTCC
TCATCTTTTTCAGCATCCGCCGCGGCCGCTGAATCTATGAAAAATAAACA
TGGTTTAGGTCTAAATAGGATTCTATTTATTTCTTCAGACAATACCATCT
TCCGTTAATAAAGCATGAATAAAGGGATAGTGTAAGGGGAAATATATATG
CGCCTAGCTTAACAGCCTCAAGTCGGTATTACTGAAAAATAGCAGCGGTG
GAGTTTGTGACAAACTGTCAAACTACTGGCTGTAATCTCTTTTCGGCAAA
AATACCCTTCTGCGAATTTCGAGCCATACTAATCCCATGTGGAAGGACAA
ATTTGGTATAGCGCTATCACTGTGTCTCGCTAAGACCAAGGACGCTTGTA
TAGCGAAGCTTCGCGATATTCCCGCTTCGATTCACTTCTTTAATATGCGA
GTGCCCACTGAAAATGGTCGTTGGAAATCAAGTGACTGAAAAGTGAAAAA
CTTACTCCATATTGGGAAATAACTGATCATATATCCTTTGTTTCGGTTGT
TCCATTTGACAGGGGTATTCATGGTGATTTCAAGTCGTTTGGTTTTCCAG
TAGATTCTGGTGAACGGCCATTTTTGGGTACTACAAAACCGATAGTATTG
AATTTGTCCTGTTTTCTTCACATCTATAAGATATAAAAAGGAATGTTATG
AAAATATAACTGAAAATAGACAAACAAGTTGGGGTCGTTGCATTTTTCTT
GAATTACCGTGAACACCGGTGGTAAGGAATGCTAAATGTCTTAATTTTTA
TCCTGCGTGTTCCGTTTGACACAGAGTATTATACCGCCACACCGTCAAGC
CTGTACGCCTCCTCCACAAGCTAGATGAGAAATGGAAAAGGTTGGTGAAC
GGCCATTTCTGGGTACTACAAAAAAGTATTGAATCTGTCCTGTTTTCTTT
ACGTCTGAAGAAAGATGTAAAAAAAACAAGAAGCCCGTTGGGCGTGAAGG
CCCAGCGAAAAGTAACGTGTTGAAAACGAGCGTGCAAAACAGCAAATGTA
TGACCATGTTGATCAAAGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTAA
GCGCCGTTTCTACCAAAACGGACGGACAGACAGCGGAAGGATGAGGACGG
AAAGTTGCAAATGAAAGGCCCTATCGCTAGCGCTGGGCCAATTATAAAAA
GTGAATGGACATATAGTAGACTGTCACCTATTCGAACTTCTATTATTCAA
ATCTTTCTATAATTTGAACTTATTCTCAATCCCCGCCATGGAGAAATCCT
CATATATACTTTCTATAATGCGAATCTCTCCATAATTCGAACAAAATAAG
ATTCCCGTTTCAGCTCGAATTAGCGAGTCAACTGTATAACTGAAAATAGG
CCAAATCTTGGGATTTCGGATAAGATGAGAAACTCTTAAAAGTTATTTTA
ATCCTTGTTAGAAGTCGCTGCGAGATGAGACTATTAAAATAGCTGCCTAT
GACACTGCAGCTAACGCTACGTTCACTACGTTCGCTTAGCATAGTTCCCG
ATATTGTCATTATTGTTATTATTATCCCGTTTCGATTCACTTCACCACTG
TGCGAGTGCAAAATACGACTGTTCATGGCGCCGCGGAAGCGGGAAGATTG
AGGAGATTTCAGCCTTCCCACTATTGAGTAAATAAGACTTTTTTTCTCAA
CTTCCTAGCGACTTTTATCTCATTTTGAGCCTTCAGCTTCCCCACTTTAG
CGGTTGTTCCAACGAGTCTGTGTCCTATTACTGCGGGATATGATTTTACG
TAGAAAATATTGTTTCCTCGGGGCAAAAATTAGTTGGACAGAACGTGCAA
GGAACGAGGACAGAAGGTTTAAGGCACTAGCGTCTCTTAAACCACTCGGT
CATTGTCTATGTGGGGGATTTTGAATTATTGTAAAGAATAGACCTTTTCA
TAAATTACGTCACGGACATCACTAGCCTCGTATTCAAACAATTTCCATGG
TGATTTTGTCTCCTGAGACATTAAATTATTTTTTTATGAATAGGAAGTAG
TTTTAATAACATCCTCTGGGAGTTAATTACCAAGGCAATAATTTCAAAAC
GAGGTAAGTGATGTTCGTCGCGTAATTTATGGAAAGGTCTATATTTACTT
ACTTTTCATCCTTATATAGTCGTTTTGTTCAACCATACATAATTTGGCAC
CAGAATACGGTGTACTTGTATCGATCTTCGTAAACAAGACTTTAACTCCT
GCAATGTTCTTGTTACCAAAATATAAGGTAAATTTACAATTCCCTTGTCC
GTAATACGGTAACGGATAGTTGGTAGAGTGAATTGATCTACGAGATAGAT
CCATATCTTCGCATTTGGTTGTTTCCAAAGATTGGTTGAACAGGAGTTGT
TTATATTCTGCTACAAATCGACCGCGATTCCATTCTATCAATGAAAAAGA
GACAATATCGTGTTACCTTAGGGGAACTAATTTTGGCGAGTAGCAAAAGT
TGAAAAAAAAATCGGCGAGAACTTATTTTGGCGTGTAACAAAGAATTTCT
TAATTTTGGCGGGAACTAACTTTGGTGAATTTTGTCAAAATCCACCACAC
TCGCCAAAATTATTTCTTTTAGAACCTAGCCTAGTTAACTAAGCCCGCAT
TCACAAGGCTAGGACACACAGCTAATGGCTATATATAGCGTTTTCGGCGC
TTTAAAGAATTTTTATATTTGTGGTTTTCATGTTTGCCTTGGAATACTGT
TATCATGAATTTCATGCTGTTATTCAGCCACAACTAAACAAGCAAACTAG
CTTAGATTTCTAGGCTATAGATACGTTGGCAAAATTTTTAGATAACATCG
AGAAACAACTCATGGGCCTCGTCATGGGCCTCGTCAAACGCCAACTCATT
TTTTTTGAAGAATAATCTCTTTTTAAGTCGAAACCTGTTTTTATCTAATT
GAATAGCGTTTTAATGGTTTAGAAGATGTAAAAACTTGTCAAGTACTGTA
TTCTTCGAAGGTTTATGGCCAAGTTAATCTTTTTATAGTTAAGACAAAAA
AAACTATTGTTATTGAAAAGTTGAATTCTTCGTCGCTTAACCATGGAAGA
GGCGACAATGCTTTCGGCACAAAATTTTGGCTCTCTCACTTCAAACGACT
CACCAGGGCCCAAGCAAAAAACTTACTTGTCATAGTAGAGAGTGTATTAA
ATTCAATTTTCATACAATGATCATTCGAATAGAGATCAGGTGGTATGATA
TTTGAATCGTTCATCGTACAAAATCGTGTCAACATTTTCAAGGATCCAGG
ACATCTATGAAGATTTAAAAAAAATCATTGAATTTAAAGCCCGAGCGGCT
AGAGTAAAATCTCTAACCTTTCTCAGGCAATAAAAAGTGAACCATTTATT
TCCCATCCAGAACGCGCCTAGAATACCCCGCAATCATGACGACGGATTGC
ATCCTCCAAGGGACGCGGATTGTATCCTCCAAGGGACGGAGTAGTCTCTT
TGCTTTTGAGCATTTTATGAAATCTAGCGATAGATTTTACTTTCAATTCG
GCGTTTGTGTAAAAACCATGCGTGGGAGTTTTCTAAGTTTCTCTCTAGCC
CCTTCGGGCCTTTAAACTCGATGATAATAATATCCATGTCTCATGTTTTA
ATCGTTAATCGTGACAACCGTCTCGTTCTCAAATGGAACTTATATATATG
GAAAATATATATTCCAATGGGACGATAATTTTGCCCATTAGTGGGACGTG
TTTAAAAAAGAAATGCAGTTGTATCACTTACCCTATCCAGATTCGAACAT
AAACATTATTACAATCAGGTGCTTGGTCCCAGACCTCAAACACTTTCCAT
CTTAATCGGATAAATGTTCCAGGTTGTGTTATAATGTTGTACGTTGATGT
ATCTTGTGCAAGATAATTATTAGGATATCGTGGCGATTGAAATTCACCGG
TCGAGTTTGTTAGAGTGACGTCAAACGAAACTGCGTCGGTGAATTGTATT
GTATTTAGTATGAGAATAAATACATTGATTCCATGTTGTAGATTTTTCAT
AATTTTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006971-exon-sc0000072-1575043694:678258..678476 | TCONS_00006971-exon-sc0000072-1575043694:678258..678476 | Clytia hemisphaerica | exon |
| TCONS_00006971-exon-sc0000072-1575043694:668917..669104 | TCONS_00006971-exon-sc0000072-1575043694:668917..669104 | Clytia hemisphaerica | exon |
| TCONS_00006971-exon-sc0000072-1510915933:678258..678476 | TCONS_00006971-exon-sc0000072-1510915933:678258..678476 | Clytia hemisphaerica | exon |
| TCONS_00006971-exon-sc0000072-1510915933:668917..669104 | TCONS_00006971-exon-sc0000072-1510915933:668917..669104 | Clytia hemisphaerica | exon |
| TCONS_00006971-exon-sc0000072-1491911889:678258..678476 | TCONS_00006971-exon-sc0000072-1491911889:678258..678476 | Clytia hemisphaerica | exon |
| TCONS_00006971-exon-sc0000072-1491911889:668917..669104 | TCONS_00006971-exon-sc0000072-1491911889:668917..669104 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000072 | supercontig | sc0000072:668917..678476 - |
Blast
The following BLAST results are available for this feature:
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