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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006886 ID=TCONS_00006886|Name=TCONS_00006886|organism=Clytia hemisphaerica|type=transcript|length=2894bpRun BLAST on NCBI protein sequence of TCONS_00006886-protein >TCONS_00006886-protein ID=TCONS_00006886-protein|Name=TCONS_00006886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=613bp YLFNAKLNIGSFCLKRSTEPDRASKSRNIRNPRENSRKQLKNLFLQIKMPRun BLAST on NCBI transcript from alignment at sc0000072:462660..483981+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006886 ID=TCONS_00006886|Name=TCONS_00006886|organism=Clytia hemisphaerica|type=transcript|length=21322bp|location=Sequence derived from alignment at sc0000072:462660..483981+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000072:462660..483981+ >TCONS_00006886 ID=TCONS_00006886|Name=TCONS_00006886|organism=Clytia hemisphaerica|type=CDS|length=29472bp|location=Sequence derived from alignment at sc0000072:462660..483981+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006886 vs. Swiss-Prot (Human)
Match: CCD63 (Coiled-coil domain-containing protein 63 OS=Homo sapiens GN=CCDC63 PE=2 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 6.946e-53 Identity = 154/522 (29.50%), Postives = 271/522 (51.92%), Query Frame = 2
Query: 236 YRIMEGDRKAYSEESQNIIRKQRAAIASLQAENEELMKDSKLAGSQQNENKDTVNVDHLNKLLVDEGDMKGHLQKVQDMITSYDIKIKQTEKKISQQRKSMGGVHMSQAKQVALQKHIRVLENRLDQANRKFNHSLSENKDLRSDIDHMRTERTIFQXXXXXXXXXXXXXXXXIAKVIESSTSAYDARDDAQNKMIALKEKSDKELLQYNTDLKELMRIIDHDRKLKEFMSVKCEDRAEMLGFSLQHALXXXXXXXXXXXXDVIQSYEMAFEQIKDATDIEDLQLLVGKFIETEDKNFALFNYVNELNNEIDHLHEQISDTQNAIERFKQETIDTDEQREDILEKLKEKCTESEKEVDGFNKVQKKSSNLLDEVRSGIESTFKKINCDVSSLVDMLGGDDGVTNANLMQYLGIIEQRTNELLQVQAF-----LAAKDVDVAPTTTERAESVXXXXXXXXXXXAAISIQPPSTGDDYDSDSSFQSEDENRPLTQQELRQRIMKGINKRENSSRREKEGRNSPD 1786
+R M RK++ +Q I Q I +L+ E +E+ L S +N N+ N L LL + D + ++ ++ ++ D KI Q EKKI+ Q++ + + + LQK I +LE RL+ F+ L+ N LR +I+ +R E+ + N+Y++L+ L K + IE S+ AY+ R +A +M A+K++ K+ QYN +++EL R+ H+ KLK F+ VK DR E + + + ++ K + + +SYE+A ++ + +L L+ F+ E+KNFA F YV ELNN+++ +H++ Q+ I + + + + +L +L++K ++ +E D + + S LD +++ +E FKKINCD + ++ LG VT+ NL QY IIE++TN+LL ++ + + + ++ P + G L P I + PP G D SD + +D +PL LRQ ++ +EN S +E G + P+
Sbjct: 38 FRKMVESRKSFKFRNQQKIASQYKEIKTLKTEQDEITLLLSLMKSSRNMNRSEKNYMELRLLLQTKEDYEALIKSLKVLLAELDEKILQMEKKIANQKQIFAKMQEANNPR-KLQKQIHILETRLNLVTVHFDKMLTTNAKLRKEIEDLRFEKAAYDNVYQQLQHCLLMEKKTMNLAIEQSSQAYEQRVEAMARMAAMKDRQKKDTSQYNLEIRELERLYAHESKLKSFLLVKLNDRNEFEEQAKREEALKAKKHVKKNRGESFESYEVAHLRLLKLAESGNLNQLIEDFLAKEEKNFARFTYVTELNNDMEMMHKRTQRIQDEIILLRSQQKLSHDDNHSVLRQLEDKLRKTTEEADMYESKYGEVSKTLDLLKNSVEKLFKKINCDATKILVQLGETGKVTDINLPQYFAIIEKKTNDLLLLETYRRILEVEGAEAEIPPPFI----NPFWGGSALLKPPEPIKVIPPVLGADPFSD---RLDDVEQPLDHSSLRQLVLDNYILKENRS-KEVRGDSLPE 550 The following BLAST results are available for this feature:
BLAST of TCONS_00006886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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