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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006808 ID=TCONS_00006808|Name=TCONS_00006808|organism=Clytia hemisphaerica|type=transcript|length=2272bpRun BLAST on NCBI protein sequence of TCONS_00006808-protein >TCONS_00006808-protein ID=TCONS_00006808-protein|Name=TCONS_00006808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MEADEHGEKRPLQKGTTPLSDVLAKLGDKGWYPVVFCLCICVLNSTVAFNRun BLAST on NCBI transcript from alignment at sc0000070:691203..698574- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006808 ID=TCONS_00006808|Name=TCONS_00006808|organism=Clytia hemisphaerica|type=transcript|length=7372bp|location=Sequence derived from alignment at sc0000070:691203..698574- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:691203..698574- >TCONS_00006808 ID=TCONS_00006808|Name=TCONS_00006808|organism=Clytia hemisphaerica|type=CDS|length=17820bp|location=Sequence derived from alignment at sc0000070:691203..698574- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006808 vs. Swiss-Prot (Human)
Match: S22A5 (Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 1.098e-80 Identity = 156/486 (32.10%), Postives = 264/486 (54.32%), Query Frame = 2
Query: 308 TPPHSCKLPDGYT-----KNASIPMEMIKGKESYSQCKIYQ----------------DFNSTSGSTEGCPNGWNFILNGKESTIVNEWSLVCDHKYLVSLATTIYFTGVMIGGAVFGQLGDKFGRKPITLICLYSHIALAVGVYFSQSFEVFAALRFFVGFFLQGVQTNSYVLMAEMTSKKNLVL--TVGFFEIFWAVGTLWLATLSWLIQDWRNIQLALCLPSLITLIYIWLFPESVLWLINKNKMEEAKENLMKISRITGKKLTAEDLDLIKPKVNESIQYSFHH---LVKTPNIRKRTFLMCYLWLASSVGYYGLSLAVGGLAGDRYLNQFIGSVIELVAFSSVIFVLKYFRRRYPLMAYYITGGVTCIVAGVLKSQASKDGFRAATYLALIGKFGLSASFATIFLFTVEQFPTVVRTLGMGTCVFWARVGGMIAPQILLLGKYTFNELPYLIFGSLSLLAAMATYFLPETFGKTLPNTIDEI 1687
TP H C++PD +N ++P+ + G+E C+ Y+ D + E C +GW F + STIV EW+LVC+ + L +++F GV++G + GQL D+FGRK + + + + FS++FE+F L VG ++VL E+ K ++ T+G IF+A G + L ++ I+DWR + +AL +P ++ + W PES WLI++ + EEA+ + K ++ G + + D + + S + H+ L++T NIR T + LW+ SVGY+GLSL L GD ++N F+ +++E+ A+ +L+Y RRY + GG + ++ D + AT L ++GKFG++A+F+ ++++T E +PTVVR +G+G +R+G +++P + LG Y LPY++ GSL++L A+ T FLPE+FG LP+TID++
Sbjct: 45 TPEHRCRVPDAANLSSAWRNHTVPLRLRDGREVPHSCRRYRLATIANFSALGLEPGRDVDLGQLEQESCLDGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDRFGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLGVC-IFYAFGYMVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIPESPRWLISQGRFEEAEVIIRKAAKANGIVVPSTIFDPSELQDLSSKKQQSHNILDLLRTWNIRMVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATALFLGGSVLLFMQLVP----PDLYYLATVLVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAYD-RFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQM 524 The following BLAST results are available for this feature:
BLAST of TCONS_00006808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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