TCONS_00006772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006772
Unique NameTCONS_00006772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006772 ID=TCONS_00006772|Name=TCONS_00006772|organism=Clytia hemisphaerica|type=transcript|length=1442bp
CTCTCACATTGTAATTTATTCCGTCTTTTAGCTATTTATAAATTGAGTAA
GTCTGTCCAGATTTCATTCAATCAAGCCAAAGAAGGAGAAGTAATCGCTG
AGCTTCCTTTCACTAGACAAATTTCTATCGTTGGGTACGCTCGTAGTCTT
CAGCACCTGAAATAAAATCAACCAATCATGGCAGATGAAAAAGAAGATAC
TCGAGAATGCGAAGCAATGCGAAAAATCTTTGTTGGTGGGTTACCTAAAG
AAGTATCTGATGAGCAATTTTTAGAATACTTCTCCCAATTTGGTAATACT
ATAGATAATATTGTTATGAAATGTCCACAAACAGGTTCGTCCCGAGGTTT
TGGTTTCATCACTTATGATGCCTCATCAGCTGTTGAAAATGTATTCCAAA
AGCGTCCACATATCCTAGAAGGAAAGACAGTAGACTGTAAAAGAGCCATG
CCTAAAGAAGTCAACAATGCATCTGCCCATGCCAAAGTCACCAAATTATT
TGTAGGGGGGCTAAAAGAAGGAGTAACTGAGGACACTCTTAAAGAATACT
TTGAAAGCAGGCATCAAGAAAGTTGTGGAAAAATTGTTAATATTGAATTG
GTTGCTGGAAAACCTTTTGGATTTATTGAAACATCAGATAATGACTTTGC
TGACAGATTGGTTATTAGTGAGGGTAACTTCTCTATTGATGGAAAGCAGA
TGCATCTACAGAAATCTGACAGTACAGGTGGACGTGGTGGAGGTCGTGGT
GGACGCGGCGGCCGTGGAAGAGGGGGAGGTCGTGGTGGATTTGGAGGCAG
AGGTGCAGGTGGACGTGGTGGTTCTCGAGGAGGGTTTGGTGGTCGTGGTG
GTGGTTACAGCAATGGTGGATATGGTGGTTATAACCAAAGTCAAAATGAC
AGTTATGGTCAAAGCTATGGACAAAATTACAATCAATACGGGCAAGGAGG
GTATGGCCAACAATCTTATGGTCAAAATTACCAGCAAAATTATGGAAATT
ATGATCAAACCAGTCAAGGGTATGGGAATTACAACCAAAGTTATGGTCAA
GGGGGCAATCAAGGAGGACAAAGATGGTAAAGgaaatATGACTGATGAGT
ACGGATATATTTATAGCGAGCGAATTTGGAATTTGAAACGAAAGAGACAA
GAATGAGAGGTATCAAAAGACGACGTCCACTGATTAACCAAAAATGTGAC
CTTCCTCAAAGCCATAAGTTCTCGGAAATGCGGGATTCAACCTTCGAAAT
TATCCatgatttgtaaaaaattttaacttgtaCATTGAAATAAACTAAAC
ACTTTTTAAACGCATCTTTGGtaattttatttacatttttacaatttGCT
GATCTTGCAAGAATTAGCAATTTACATACTTTGGGCGTACacactttcgc
gattttcgcgaattttggccttttacGCGAAGGTAAATaatg
Run BLAST on NCBI

protein sequence of TCONS_00006772-protein

>TCONS_00006772-protein ID=TCONS_00006772-protein|Name=TCONS_00006772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MADEKEDTRECEAMRKIFVGGLPKEVSDEQFLEYFSQFGNTIDNIVMKCP
QTGSSRGFGFITYDASSAVENVFQKRPHILEGKTVDCKRAMPKEVNNASA
HAKVTKLFVGGLKEGVTEDTLKEYFESRHQESCGKIVNIELVAGKPFGFI
ETSDNDFADRLVISEGNFSIDGKQMHLQKSDSTGGRGGGRGGRGGRGRGG
GRGGFGGRGAGGRGGSRGGFGGRGGGYSNGGYGGYNQSQNDSYGQSYGQN
YNQYGQGGYGQQSYGQNYQQNYGNYDQTSQGYGNYNQSYGQGGNQGGQRW
Run BLAST on NCBI

transcript from alignment at sc0000070:140417..150118-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006772 ID=TCONS_00006772|Name=TCONS_00006772|organism=Clytia hemisphaerica|type=transcript|length=9702bp|location=Sequence derived from alignment at sc0000070:140417..150118- (Clytia hemisphaerica)
CTCTCACATTGTAATTTATTCCGTCTTTTAGCTATTTATAAATTGAGTAA
GTCTGTCCAGATTTCATTCAATCAAGCCAAAGAAGGAGAAGTAATCGCTG
AGCTTCCTTTCACTAGACAAATTTCTATCGTTGGGTACGCTCGTAGTCTT
CAGCACCTGAAATGTAAGTATTTCTATTCAGAGGATACATGGTTGTACCA
ACGACTTATAAATATATATATTATATAGTCGTTCGTTTTATTATCTTCCT
TCTATATCAGTTTAGGGATAAAAATTCCATTTATTTTTTAGTTCCACTAA
GACCTTGATTTTTTTCTTTGCATGAGTTTAATTTTGGATCTACACGTTTT
TCTTATTTATATAACGCTGTTCTTCCATTTTGTGAATATTCTCAACGTTT
CTCAAAAATAATCTTCAAGTGATGAAAGTAGATAAAAATAATCTGGTGTC
TTTCGGTCATTCAAACAATTTGGGCCATTCCAGAAAATTTTTGTATACCC
CGTTGTACGACGTGCATTTTTTAATTTTTTCTAGCCTCGGAAATAATTTT
TTTCTTTTCCAGTGGTGGTCAGAAATTCCGATGAAAATCTATGTACTTTT
GCAAAATGCACTCTACTGTATTTTGTCTTTTTTTCAATACACCGTTTAGG
AGTCTCGCCATTTCACGGTACTCCATTGCAGAGGCCCGGTAAAAATGGTA
GGTTAAAAATGCGCACTTTAGTACTGTAAAAGGTTAGAGGAATTTAAACA
TTGTGAATTTTTGTCTCTCCTTTAAAGAGAATGATTTAGATATTTGAACA
TGATATCAATGATAATTTTATAAGTCTCTCCTGAAAATTTCACAAAAATT
CATCAAGAGGAAAAGAAGTTATGATTAAAAGGAGTTCTTTACCTACCGTA
TTTCTGCCATCCTTATGAGAACCAGATGTTTACCTACTGTTTTTTTACGG
AGGAGAGTGAATTTTCCGTGATCGCTAAAATCAAAATAATGGAAAATTGG
ATTGACGCGTGTGCAGTCGACACTCCTAAACGGTGTATTGCCTTGAAAAT
TCATACATTTTCTTCTCTCACCTTGGAAATTTTGAATTTTGGTGAAAACC
TTTGCCCTCAGAAATCGTGTGTCTCCTGCCCCCCCCTGTTACAGACAAAT
TCTGGAATGGCCCTTTGAATGCCAAACCAATCAAATGTTTTCCATAAGTG
GAAAAAATTTGTTATCAAACCATTTAGACCATAGAGGACAGTCTTTTGAA
TAACATAAATTACTGCCAATGGCTACTCGTTCAGGAAAACAAAATTAAAT
TTTCCACGTAGCCAGACGGTGTCAATCGAACAACTTCGAACAAAAATTTC
AATCGAACGCGATCAAATAATTGCGCTTCGATTGTCAAACGTAATCGAAT
CTCAATCGAACGGCCGATTCCTGGGTAATATTCGATTGCGTTCGAGTAAG
GTTAGATTGGTTCGATTGATAGTTGACTATCGATTGATAGTTGACTATGT
TTGATTGGTTTGATTGATTGTCAATTACATTGGTTTAATCTTCGATTTCG
TTCGATTACAATTATATTTGATGAGTTTGATTGCGATTTAAATTGGATCA
CTCTGTTAGAGATTTTTAGTATCATACCAAAGCGAATAAAATCTATTACA
ATTGTCAATTGAATCAATCGAACGTAACTGCACGTAATCAAAGCAATCGA
ACAGCAAATCCTGGGTAATATTGATTCAGCGTTCGATTCGTTCGATTGAC
ACTGCTGGACGTAGTTGGACTAAAATTTGGCAAATTTTTTTGCAGTTAGT
ACACCTAAACAGGGCTGCAAATAAGCGTCGGTCATCGGTCAATGTCCGAC
TGAAAAAGCTATTTGACCGACTGAAAATCTTTTGTGTCGGTCATGATGTC
CGAATGAAAATAGTAATAAACCATCAACTTGAGAGTTGAAAATAAATCTC
TTACACTCCTGTCTCTTACTTAGCCTATTCTTTTAATACTCGCTTCCTTT
GTAACTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTC
ATAACTTTCAAGAGTGTTTCTAAGATCACTTTTATCGACTTGCTTTCTTC
GTTACTTTCTTTGTTTCTAAGATCACTTTATCGACTCGTTTTCTTCGTAA
CTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTCGTAA
CTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTCGTAA
CTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTCATAA
CTTTCAAGAGCATTTCTAAGATAACTTTTATCAACTCGCTTTCTTCTTAA
CTATTAAGAGTGTTTCTAAGTTAACTTTTATCAACTTGCTTTCTTCTTAA
CTTTCAAAGGTGTTTCTAAGTTAACTTTTATCTACTTGCTTTCTTCGTAA
CTTCCAAAGGTGTTTCTAAGATCACTTTTATCGAATCAATTTCTCTGTTA
TATACAGTAACAAACTGTTGAAAGGTAACTTTCTCCGTAACTTTAAAAAA
AATATACACTGAATGACTGACAAGATTTTGAGTTTGACCGACAGGATTTC
ATTTCTGTCGGACATGATGTCCGATAGACTAAAAATATTTATTTGCAGCC
CTGCACCTAAGTGATTTTATCCAATTCACATGGCACACCACCACGGTACT
GACCGAGTTGACCCTTGGCATACATTAGACTTGAGTGTCCTTGTGTCACT
GTGGTATGAAAATCCTTTGGAGGCACATGGTGGCAAGGTGGTTTTTTGTG
GTTGCAGTTGAAATATTTTAATCGTTGGTCGTTCACCAATAACACAATTA
CTCTTTTTTGGACCTACCTCCAGGTGCCCCGGTGGAGGTTCTATAAATTA
ACTCATGTCCGTTCGTTCGTTCTTTCGTCCGTCTGTTACCAGCTTTTCTC
AGGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATG
GCAATGCCCAGAACGAGACGGAGCCCGATTTTTNNNNNNNNNNNNNNNNA
AAATTTATTTGGGCAAATTTAGGCCAAAAACTACCTAAAAATAGGGTTTT
TTAGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACA
AAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCTGG
AAAATTCTTATTCGCCTTAAAAAACAGATTTTCATATATTGGGGGAAATT
CCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCGTTAT
TTTTTTCTTATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGT
GTCGGAGCCCGATTTTTGAAAAAAATATATTTGGGCAAATTTGGGCCAAA
ACCTGCCTAAAAATAGGGTTTTTTGGACTTAGTGCAAAATCCTGTCATTA
CTTTTTTCTGATTTTTTGTACAAAGATTGAGGGCAAGATTCTCTAAAGAA
TGGCTGAAGTGGTTTTTCCTGGAAAATTCTTATTCGCCTTAAAAGACGGA
TTTTCGTATTTTAGGGAAATTCCCTTTAACCAAATAAGGGAATATAGCTT
TTCTCAATGTTGACTCATTATTTTTTTCTGATTTTTTGCACAATAATGCA
AAATGACAACACCCAAAATGTGACGGAGCCAGATTTTTAAGGAAAATTTT
TTTGGGCAAATTTGGACCCAAAACAGCTTAAAAGGTTTTTTGGGCCTGAA
TGGTTCAAGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTCACA
TTATTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTA
TTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCA
TTCAGCATGTTGCTTGTTTATTTTCTGTTTAATGGAATTGCCATTTTGCT
AAAATAAAAAAAAATTACAAATATTTATTTCTGCCTTTCCAACCCTTTAC
TGCTCAGCCATAAAAGGAAACTTTTTGTAACAATTACATTTTGAGCAGGA
AGGTAAAATAAAAAGGTCCAGTGCTTTCTTACTATTACTACTTATGTCAT
CGATTTCAATAATAATTTTATTGCTGAAGCTTAAATTTGTAAAAAAGTGA
GTCTTGTGCCATTCTTAGCCACCATTATTGAAAGTGTGATTAAGTTCACA
TGGTTTAAATTTTTGACACTTTACCGTGACTATTTTCAGAAAATCAAAAG
AAACCCATGTGACCTTACTTGCTTGAAATATTTTCTCACTTTCACTTTCA
CACTTGGCAAAAAAAGCTAAAACTTCAACTAGCCCACAATTACTATTTTT
GATAACTTAAGATCACTGAAATAGAACTTTAAAGATAACTTTTGCATATG
AAATAAGCCCTGAATACTAATGTATCAACTACTAACGAAGTACTCTTAGG
TGCCAAATAAACGGGGGGGGTTGGAAAATTTTTGAAATTTCAATAAATGG
GGGTGACCTAATTGCCGGGGGGGGGGGGGAAATTGTACTTATGAAAACCC
AAAAATAAGGAAAATATAGGCTAAAATCAGGCTTTTTGGAGCAAAATAAG
GGGACTTCTTTTAGCCAACTGAAAATATTCTTTAAAATTAATAAACGGGG
GGGGGGCCCTATTAAGGGCCGGGGGTTGGAAAATTTTCGAAAAATTAAGA
AGCGAGGGGGACGGTGTTACGGGGGGGGGGGTGGAAATTGTACTTATGAA
AACCCAAAAATAAGGAAAATATAGGCTAAAATCAGGCTTTTTGGAGCAAA
ATAAGGGGACTTCTTTTAGCCAACTGAAAATATTCTTTAAAATTAATAAA
CGGGGGGGGGGTCCTATTAAGGTCCGGGGGTTGGAAAATTTTCAAAAAAT
TAACAAGCGGGGGGACCATTTATTTGGCACCTAAGAGTATGTGGCTTGGT
CAAAAATATATTTTTCACCCGGACAGTTTCCGAAAAGACTATATTTTTTA
TTTTCGCCTAACAAAATTGTTCAAAACTGCCTGCTTCTTAGTGTTCTTAA
TCATTTTTTCTTAATTTGAAAAAGGGTTTTAAAGGGCCAACAGTTTCATG
AAAGCAATTTCTTGAGAAATTCGCTACAGGTGGTTTTACTTTCCTAATGA
TAATCACAAGAAACAATTATACTAAAGTCATATAAGTTTAATGAATGACT
TACAAATTTATGAAGTTCTCATTTATCCAATCTTTAGAAAATCAACCAAT
CATGGCAGATGAAAAAGAAGATACTCGAGAATGCGAAGCAATGCGAAAAA
TCTTTGTTGGTGGGTTACCTAAAGAAGTATCTGATGAGCAATTTTTAGAA
TACTTCTCCCAATTTGGTAATACTATAGATAATATTGTTATGAAATGTCC
ACAAACAGGTTCGTCCCGAGGTTTTGGTTTCATCACTTATGATGCCTCAT
CAGCTGTTGAAAATGTATTCCAAAAGCGTCCACATATCCTAGAAGGAAAG
ACAGTAGACTGTAAAAGAGCCATGCCTAAAGAAGTCAACAATGCATCTGC
CCATGCCAAAGTCACCAAATTATTTGTAGGGGGGCTAAAAGAAGGAGTAA
CTGAGGACACTCTTAAAGAATACTTTGAAAGCAGGCATCAAGAAAGTTGT
GGAAAAATTGTTAATATTGAATTGGTTGCTGGAAAACCTTTTGGATTTAT
TGAAACATCAGATAATGACTTTGCTGACAGATTGGTTATTAGTGAGGGTA
ACTTCTCTATTGATGGAAAGCAGATGCATCTACAGAAATCTGACAGTAAG
TAAAACCTATTGACCCTCACAAATCTATCTCGAATTTCTATTTTTGTTTG
TTTGATAGTCTTTGTATTGAAAATTATCATTGCTGATCATTTCATCAGAT
CAGATCATTTTTATTTTACTCAAACTGACTATTATAAATCTCTAACACTA
ACACTGTGTGTTATAGTGCCATAATAATCATCTTGCCAATTTTTTTCTCA
CAATAAATGATTTGATTAATTTACTTCAGGTACAGGTGGACGTGGTGGAG
GTCGTGGTGGACGCGGCGGCCGTGGAAGAGGGGGAGGTCGTGGTGGATTT
GGAGGCAGAGGTGCAGGTGGACGTGGTGGTTCTCGAGGAGGGTTTGGTGG
TCGTGGTGGTGGTTACAGCAATGGTGGATATGGTGGTTATAACCAAAGTC
AAAATGACAGTTATGGTCAAAGCTATGGACAAAATTACAATCAATACGGG
CAAGGAGGGTATGGCCAACAATCTTATGGTCAAAATTACCAGCAAAATTA
TGGAAATTATGATCAAACCAGTCAAGGGTATGGGAATTACAACCAAAGTT
ATGGTCAAGGGGGCAATCAAGGAGGACAAAGATGGTAAAGGTAAGATATT
GACTTTTTCCGTGTCACAGTCTCAGTATTAAAACTGCAACCAACAATAAC
TCAAACTGACTCAAACCATCAATTTTAAGCTTGTTTTCCTTCAAAGAAAC
AAATTTGATACCTTGAAATTCATAAATGATATTCTTCTCTTCTTTCTATA
GGTTAGGCAAATGTCACTTTAAGTCCATTAGCTACTAAGTTAAGCCAACG
AAACAACGATAGATGTACATAGGATCATTCCACAATGTAAATAGACCAAT
AATCACTGCTGCAACTAAGAGCGTCAACATGTTATTAGATCCAGTCTTAA
GTTAGATGTCATTTACAAACTTATCACTTGGACTGCTGCTTTATTACCGA
ATTTTTCGATAGAGTCGAACATTAATACTACTGCAAGATGTATCTTATAA
ATTGGTTTTATGTGTCGAAATGTTTTCGAAATGATTTTGAATTTAAATAA
AATGCTTTGTACACTTCGTAATAACTCAAACCAGTTAATCGATCGTTCTG
AAAACTATGTTCATTTTCATTCTGGTCCGTGCTTGAATATACTGTTAGTT
TTCTTATTCCCCTGATAAGTGAATTTTTTCTTGTTTGAGCCTTCTCTGGT
TTTAAATTTGCTTTGAGGCATAGATTTCGACTCGCTTTGTCATGTTACAT
ATCTATTGTGAAACTATGTGCTAGGTTTTTTGCTCTTATCTTATATGTGA
ACTGCAAAGAAAATAATTGAACATAACTTTTTGTTCTACTGTAAAGACTC
TTTTATTTTTCTCTGACAAACATGGAAAAGGCTAAATTAGTGGAGAAACA
AAATTTTGGAATTACCAAAATAAAATGTAATGGTCTATGTAATTAACTCA
CCTTTCTGGTAATGTTAGAAGCTCAAATTAAGACTAAGGTAGGGAGATCT
TCGTTCTTTTCATTAAAAAAATAATCCTTATAAAGCTTATTGCACTACTT
TCAATGCGACGAGATGAAGAACTTGTTCTTGGAAAATTATCTTTTCCTGG
CTTAAATCTTTTTTAATATTTGTGAAATTATGAATGAGATTATCTCGAAA
AATATTATTTCCTCAATTTTTAGTTGAACTTACTTTTTTTATTTCAGGAA
ATATGACTGATGAGTACGGATATATTTATAGCGAGCGAATTTGGAATTTG
AAACGAAAGAGACAAGAATGAGGTAATGCATCAATTTCAATACCGATTTT
TTGAAATTATCGAAGGAAAAGTTTGTACAACCATCTTACAGTAGTTATGT
TTTGAAATGAAACTGGAAATTTACGTTGGATGATTTATTTCATCACCCCT
TTTTAATCCAGCATCTAGATTAGATCAGTAATGATGACTTGCACTGGGTT
ATGAATCAATGATTCGAATAAGCATGACTGAACTGATATTACTGTTGAAA
CATAGAACATGTAATTTTTGACAGCTTAATAAACGATTACCTTAAGGGAA
CTTAATTTGGCGGGAACTAATTTTGACGAGCGGCAAAAATTTTTTTAATT
TCGGCGAGAACTTATTTTGGCAAATGATGAATTTTTTTAATTTTGGCAAA
TGACAGCGTAAATCTGTTCTATTTTACCTTTTTTGTCATTTTATTTTTAT
TTACTCTTGGGTGCCAAATAAACGGGGGGGGGGGGGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGGGTTGGAAAAAATCGAAAA
ATTAACAAGCGGGGGGGGGGGCGTTTATTTGGCACCTAAGAGTAAGCAAA
ATACCAAAAAATTTATTTCGATGAGAACTTATTTTGGTGAGTGAACAATA
TTTAATTTTGGCGAATTTTGTCTAAATTCGCCATATTCGCCAAAATTAGT
TCCTGTCAAAACAAGTTCCCTTATGGTATTAATGAACTCAATCCTTACTT
CTAGAGGTATCAAAAGACGACGTCCACTGATTAACCAAAAATGTGACCTT
CCTCAAAGCCATAAGGTAAGAAATAGTAAAAGTGGATCGATCCAAAATCA
AATGATTTCAGTGATGACATTCAAGTAAAAGACTAGAGTCGCAGAATACT
CCTGTTGAGAAGTCCTTGATAGACTGATGAAATCATTATTTTTTGTGTAG
GGTTTTGGAAATAGGGCAATTTGGCCCGAATACTTTCATCATTTTCTGGT
CTACGGAAATGATGAGGATATTTGTAATAATTTTGAATTATTTTTTTATA
ATTTTACATTTATCAAAATCAAATGATTTTAGTGATGACATTCAAGTAAA
AGACTAGAGTCGCAGAATACTCCTGTTGAGAAGTCCTTGATAGACTGATG
AAATCATTATCTTTTGTGTAGGGTTTGGGAAATAGGGCAATTTGGTCCGA
ATACTTTCATCATTTTCTGGTCTACGGAAAGGATGAAGATATTTGTAATA
ATTTTGAATTATTTTTTTACTTTTGCAGTTCTCGGAAATGCGGGATTCAA
CCTTCGAAATTATCCATGATTTGTAAAAAATTTTAACTTGTACATTGAAA
TAAACTAAACACTTTTTAAACGCATCTTTGGTAATTTTATTTACATTTTT
ACAATTTGCTGATCTTGCAAGAATTAGCAATTTACATACTTTGGGCGTAC
ACACTTTCGCGATTTTCGCGAATTTTGGCCTTTTACGCGAAGGTAAATAA
TG

Coding sequence (CDS) from alignment at sc0000070:140417..150118-

>TCONS_00006772 ID=TCONS_00006772|Name=TCONS_00006772|organism=Clytia hemisphaerica|type=CDS|length=1806bp|location=Sequence derived from alignment at sc0000070:140417..150118- (Clytia hemisphaerica)
GTACAGGTGGACGTGGTGGAGGTCGTGGTGGACGCGGCGGCCGTGGAAGA
GGGGGAGGTCGTGGTGGATTTGGAGGCAGAGGTGCAGGTGGACGTGGTGG
TTCTCGAGGAGGGTTTGGTGGTCGTGGTGGTGGTTACAGCAATGGTGGAT
ATGGTGGTTATAACCAAAGTCAAAATGACAGTTATGGTCAAAGCTATGGA
CAAAATTACAATCAATACGGGCAAGGAGGGTATGGCCAACAATCTTATGG
TCAAAATTACCAGCAAAATTATGGAAATTATGATCAAACCAGTCAAGGGT
ATGGGAATTACAACCAAAGTTATGGTCAAGGGGGCAATCAAGGAGGACAA
AGATGGTAAATGGCAGATGAAAAAGAAGATACTCGAGAATGCGAAGCAAT
GCGAAAAATCTTTGTTGGTGGGTTACCTAAAGAAGTATCTGATGAGCAAT
TTTTAGAATACTTCTCCCAATTTGGTAATACTATAGATAATATTGTTATG
AAATGTCCACAAACAGGTTCGTCCCGAGGTTTTGGTTTCATCACTTATGA
TGCCTCATCAGCTGTTGAAAATGTATTCCAAAAGCGTCCACATATCCTAG
AAGGAAAGACAGTAGACTGTAAAAGAGCCATGCCTAAAGAAGTCAACAAT
GCATCTGCCCATGCCAAAGTCACCAAATTATTTGTAGGGGGGCTAAAAGA
AGGAGTAACTGAGGACACTCTTAAAGAATACTTTGAAAGCAGGCATCAAG
AAAGTTGTGGAAAAATTGTTAATATTGAATTGGTTGCTGGAAAACCTTTT
GGATTTATTGAAACATCAGATAATGACTTTGCTGACAGATTGGTTATTAG
TGAGGGTAACTTCTCTATTGATGGAAAGCAGATGCATCTACAGAAATCTG
ACAGTACAGGTGGACGTGGTGGAGGTCGTGGTGGACGCGGCGGCCGTGGA
AGAGGGGGAGGTCGTGGTGGATTTGGAGGCAGAGGTGCAGGTGGACGTGG
TGGTTCTCGAGGAGGGTTTGGTGGTCGTGGTGGTGGTTACAGCAATGGTG
GATATGGTGGTTATAACCAAAGTCAAAATGACAGTTATGGTCAAAGCTAT
GGACAAAATTACAATCAATACGGGCAAGGAGGGTATGGCCAACAATCTTA
TGGTCAAAATTACCAGCAAAATTATGGAAATTATGATCAAACCAGTCAAG
GGTATGGGAATTACAACCAAAGTTATGGTCAAGGGGGCAATCAAGGAGGA
CAAAGATGGTAAATGGCAGATGAAAAAGAAGATACTCGAGAATGCGAAGC
AATGCGAAAAATCTTTGTTGGTGGGTTACCTAAAGAAGTATCTGATGAGC
AATTTTTAGAATACTTCTCCCAATTTGGTAATACTATAGATAATATTGTT
ATGAAATGTCCACAAACAGGTTCGTCCCGAGGTTTTGGTTTCATCACTTA
TGATGCCTCATCAGCTGTTGAAAATGTATTCCAAAAGCGTCCACATATCC
TAGAAGGAAAGACAGTAGACTGTAAAAGAGCCATGCCTAAAGAAGTCAAC
AATGCATCTGCCCATGCCAAAGTCACCAAATTATTTGTAGGGGGGCTAAA
AGAAGGAGTAACTGAGGACACTCTTAAAGAATACTTTGAAAGCAGGCATC
AAGAAAGTTGTGGAAAAATTGTTAATATTGAATTGGTTGCTGGAAAACCT
TTTGGATTTATTGAAACATCAGATAATGACTTTGCTGACAGATTGGTTAT
TAGTGAGGGTAACTTCTCTATTGATGGAAAGCAGATGCATCTACAGAAAT
CTGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003786XLOC_003786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006772-proteinTCONS_00006772-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006772-exon-sc0000070-1575043694:149956..150118TCONS_00006772-exon-sc0000070-1575043694:149956..150118Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1575043694:144324..144881TCONS_00006772-exon-sc0000070-1575043694:144324..144881Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1575043694:143729..144089TCONS_00006772-exon-sc0000070-1575043694:143729..144089Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1575043694:142547..142621TCONS_00006772-exon-sc0000070-1575043694:142547..142621Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1575043694:141104..141164TCONS_00006772-exon-sc0000070-1575043694:141104..141164Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1575043694:140417..140640TCONS_00006772-exon-sc0000070-1575043694:140417..140640Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1510915933:149956..150118TCONS_00006772-exon-sc0000070-1510915933:149956..150118Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1510915933:144324..144881TCONS_00006772-exon-sc0000070-1510915933:144324..144881Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1510915933:143729..144089TCONS_00006772-exon-sc0000070-1510915933:143729..144089Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1510915933:142547..142621TCONS_00006772-exon-sc0000070-1510915933:142547..142621Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1510915933:141104..141164TCONS_00006772-exon-sc0000070-1510915933:141104..141164Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1510915933:140417..140640TCONS_00006772-exon-sc0000070-1510915933:140417..140640Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1491911889:149956..150118TCONS_00006772-exon-sc0000070-1491911889:149956..150118Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1491911889:144324..144881TCONS_00006772-exon-sc0000070-1491911889:144324..144881Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1491911889:143729..144089TCONS_00006772-exon-sc0000070-1491911889:143729..144089Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1491911889:142547..142621TCONS_00006772-exon-sc0000070-1491911889:142547..142621Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1491911889:141104..141164TCONS_00006772-exon-sc0000070-1491911889:141104..141164Clytia hemisphaericaexon
TCONS_00006772-exon-sc0000070-1491911889:140417..140640TCONS_00006772-exon-sc0000070-1491911889:140417..140640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:140417..150118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
596.549	520.142	1377.86	1568.84	1080.71	861.461	380.927	406.616	193.443	230.612	185.869	164.743	211.834	206.813	215.014	234.475	258.298	256.41	99.4072	119.973	235.888	236.296	327.106	306.334	285.289	316.352	185.999	191.39	270.899	323.514
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00006772 vs. Swiss-Prot (Human)
Match: ROA2 (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 9.324e-31
Identity = 69/181 (38.12%), Postives = 107/181 (59.12%), Query Frame = 1 
Query:  202 RECEAMRKIFVGGLPKEVSDEQFLEYFSQFGNTIDNIVMKCPQTGSSRGFGFITYDASSAVENVFQKRPHILEGKTVDCKRAMPK-EVNNASAHAKVTKLFVGGLKEGVTEDTLKEYFESRHQESCGKIVNIELV----AGKP--FGFIETSDNDFADRLVISEGNFSIDGKQMHLQKSDS 723
            RE E  RK+F+GGL  E ++E    Y+ Q+G   D +VM+ P +  SRGFGF+T+ + + V+     RPH ++G+ V+ KRA+ + E     AH  V KLFVGG+KE   E  L++YF     E  GKI  IE++    +GK   FGF+   D+D  D++V+ + + +I+G    ++K+ S
Sbjct:   15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYF-----EEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYH-TINGHNAEVRKALS 189
The following BLAST results are available for this feature:
BLAST of TCONS_00006772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROA29.324e-3138.12Heterogeneous nuclear ribonucleoproteins A2/B1 OS=... [more]
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