XLOC_003786 (gene) - C. hemisphaerica

Overview
NameXLOC_003786
Unique NameXLOC_003786
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000070:140417..150118-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003786 ID=XLOC_003786|Name=XLOC_003786|organism=Clytia hemisphaerica|type=gene|length=9702bp|location=Sequence derived from alignment at sc0000070:140417..150118- (Clytia hemisphaerica)
CTCTCACATTGTAATTTATTCCGTCTTTTAGCTATTTATAAATTGAGTAA
GTCTGTCCAGATTTCATTCAATCAAGCCAAAGAAGGAGAAGTAATCGCTG
AGCTTCCTTTCACTAGACAAATTTCTATCGTTGGGTACGCTCGTAGTCTT
CAGCACCTGAAATGTAAGTATTTCTATTCAGAGGATACATGGTTGTACCA
ACGACTTATAAATATATATATTATATAGTCGTTCGTTTTATTATCTTCCT
TCTATATCAGTTTAGGGATAAAAATTCCATTTATTTTTTAGTTCCACTAA
GACCTTGATTTTTTTCTTTGCATGAGTTTAATTTTGGATCTACACGTTTT
TCTTATTTATATAACGCTGTTCTTCCATTTTGTGAATATTCTCAACGTTT
CTCAAAAATAATCTTCAAGTGATGAAAGTAGATAAAAATAATCTGGTGTC
TTTCGGTCATTCAAACAATTTGGGCCATTCCAGAAAATTTTTGTATACCC
CGTTGTACGACGTGCATTTTTTAATTTTTTCTAGCCTCGGAAATAATTTT
TTTCTTTTCCAGTGGTGGTCAGAAATTCCGATGAAAATCTATGTACTTTT
GCAAAATGCACTCTACTGTATTTTGTCTTTTTTTCAATACACCGTTTAGG
AGTCTCGCCATTTCACGGTACTCCATTGCAGAGGCCCGGTAAAAATGGTA
GGTTAAAAATGCGCACTTTAGTACTGTAAAAGGTTAGAGGAATTTAAACA
TTGTGAATTTTTGTCTCTCCTTTAAAGAGAATGATTTAGATATTTGAACA
TGATATCAATGATAATTTTATAAGTCTCTCCTGAAAATTTCACAAAAATT
CATCAAGAGGAAAAGAAGTTATGATTAAAAGGAGTTCTTTACCTACCGTA
TTTCTGCCATCCTTATGAGAACCAGATGTTTACCTACTGTTTTTTTACGG
AGGAGAGTGAATTTTCCGTGATCGCTAAAATCAAAATAATGGAAAATTGG
ATTGACGCGTGTGCAGTCGACACTCCTAAACGGTGTATTGCCTTGAAAAT
TCATACATTTTCTTCTCTCACCTTGGAAATTTTGAATTTTGGTGAAAACC
TTTGCCCTCAGAAATCGTGTGTCTCCTGCCCCCCCCTGTTACAGACAAAT
TCTGGAATGGCCCTTTGAATGCCAAACCAATCAAATGTTTTCCATAAGTG
GAAAAAATTTGTTATCAAACCATTTAGACCATAGAGGACAGTCTTTTGAA
TAACATAAATTACTGCCAATGGCTACTCGTTCAGGAAAACAAAATTAAAT
TTTCCACGTAGCCAGACGGTGTCAATCGAACAACTTCGAACAAAAATTTC
AATCGAACGCGATCAAATAATTGCGCTTCGATTGTCAAACGTAATCGAAT
CTCAATCGAACGGCCGATTCCTGGGTAATATTCGATTGCGTTCGAGTAAG
GTTAGATTGGTTCGATTGATAGTTGACTATCGATTGATAGTTGACTATGT
TTGATTGGTTTGATTGATTGTCAATTACATTGGTTTAATCTTCGATTTCG
TTCGATTACAATTATATTTGATGAGTTTGATTGCGATTTAAATTGGATCA
CTCTGTTAGAGATTTTTAGTATCATACCAAAGCGAATAAAATCTATTACA
ATTGTCAATTGAATCAATCGAACGTAACTGCACGTAATCAAAGCAATCGA
ACAGCAAATCCTGGGTAATATTGATTCAGCGTTCGATTCGTTCGATTGAC
ACTGCTGGACGTAGTTGGACTAAAATTTGGCAAATTTTTTTGCAGTTAGT
ACACCTAAACAGGGCTGCAAATAAGCGTCGGTCATCGGTCAATGTCCGAC
TGAAAAAGCTATTTGACCGACTGAAAATCTTTTGTGTCGGTCATGATGTC
CGAATGAAAATAGTAATAAACCATCAACTTGAGAGTTGAAAATAAATCTC
TTACACTCCTGTCTCTTACTTAGCCTATTCTTTTAATACTCGCTTCCTTT
GTAACTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTC
ATAACTTTCAAGAGTGTTTCTAAGATCACTTTTATCGACTTGCTTTCTTC
GTTACTTTCTTTGTTTCTAAGATCACTTTATCGACTCGTTTTCTTCGTAA
CTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTCGTAA
CTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTCGTAA
CTTTCAAGAGTGTTTCTAAGATCACTTTTATCAATTCGCTTTCTTCATAA
CTTTCAAGAGCATTTCTAAGATAACTTTTATCAACTCGCTTTCTTCTTAA
CTATTAAGAGTGTTTCTAAGTTAACTTTTATCAACTTGCTTTCTTCTTAA
CTTTCAAAGGTGTTTCTAAGTTAACTTTTATCTACTTGCTTTCTTCGTAA
CTTCCAAAGGTGTTTCTAAGATCACTTTTATCGAATCAATTTCTCTGTTA
TATACAGTAACAAACTGTTGAAAGGTAACTTTCTCCGTAACTTTAAAAAA
AATATACACTGAATGACTGACAAGATTTTGAGTTTGACCGACAGGATTTC
ATTTCTGTCGGACATGATGTCCGATAGACTAAAAATATTTATTTGCAGCC
CTGCACCTAAGTGATTTTATCCAATTCACATGGCACACCACCACGGTACT
GACCGAGTTGACCCTTGGCATACATTAGACTTGAGTGTCCTTGTGTCACT
GTGGTATGAAAATCCTTTGGAGGCACATGGTGGCAAGGTGGTTTTTTGTG
GTTGCAGTTGAAATATTTTAATCGTTGGTCGTTCACCAATAACACAATTA
CTCTTTTTTGGACCTACCTCCAGGTGCCCCGGTGGAGGTTCTATAAATTA
ACTCATGTCCGTTCGTTCGTTCTTTCGTCCGTCTGTTACCAGCTTTTCTC
AGGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATG
GCAATGCCCAGAACGAGACGGAGCCCGATTTTTNNNNNNNNNNNNNNNNA
AAATTTATTTGGGCAAATTTAGGCCAAAAACTACCTAAAAATAGGGTTTT
TTAGACTTTGTGCAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACA
AAGATGGAGGGCAAGATTCTCTAAAGAATGGCTGAAGTGGTTTTTCCTGG
AAAATTCTTATTCGCCTTAAAAAACAGATTTTCATATATTGGGGGAAATT
CCCTTTAACCAAATAAGAAAATATAGCTTTTCTCAATGTTGACTCGTTAT
TTTTTTCTTATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGT
GTCGGAGCCCGATTTTTGAAAAAAATATATTTGGGCAAATTTGGGCCAAA
ACCTGCCTAAAAATAGGGTTTTTTGGACTTAGTGCAAAATCCTGTCATTA
CTTTTTTCTGATTTTTTGTACAAAGATTGAGGGCAAGATTCTCTAAAGAA
TGGCTGAAGTGGTTTTTCCTGGAAAATTCTTATTCGCCTTAAAAGACGGA
TTTTCGTATTTTAGGGAAATTCCCTTTAACCAAATAAGGGAATATAGCTT
TTCTCAATGTTGACTCATTATTTTTTTCTGATTTTTTGCACAATAATGCA
AAATGACAACACCCAAAATGTGACGGAGCCAGATTTTTAAGGAAAATTTT
TTTGGGCAAATTTGGACCCAAAACAGCTTAAAAGGTTTTTTGGGCCTGAA
TGGTTCAAGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTCACA
TTATTCAACACACAAGCTTTATTTTTCCATTCTGAATTTTTGTACAATTA
TTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCATTAGGTAGGTCCA
TTCAGCATGTTGCTTGTTTATTTTCTGTTTAATGGAATTGCCATTTTGCT
AAAATAAAAAAAAATTACAAATATTTATTTCTGCCTTTCCAACCCTTTAC
TGCTCAGCCATAAAAGGAAACTTTTTGTAACAATTACATTTTGAGCAGGA
AGGTAAAATAAAAAGGTCCAGTGCTTTCTTACTATTACTACTTATGTCAT
CGATTTCAATAATAATTTTATTGCTGAAGCTTAAATTTGTAAAAAAGTGA
GTCTTGTGCCATTCTTAGCCACCATTATTGAAAGTGTGATTAAGTTCACA
TGGTTTAAATTTTTGACACTTTACCGTGACTATTTTCAGAAAATCAAAAG
AAACCCATGTGACCTTACTTGCTTGAAATATTTTCTCACTTTCACTTTCA
CACTTGGCAAAAAAAGCTAAAACTTCAACTAGCCCACAATTACTATTTTT
GATAACTTAAGATCACTGAAATAGAACTTTAAAGATAACTTTTGCATATG
AAATAAGCCCTGAATACTAATGTATCAACTACTAACGAAGTACTCTTAGG
TGCCAAATAAACGGGGGGGGTTGGAAAATTTTTGAAATTTCAATAAATGG
GGGTGACCTAATTGCCGGGGGGGGGGGGGAAATTGTACTTATGAAAACCC
AAAAATAAGGAAAATATAGGCTAAAATCAGGCTTTTTGGAGCAAAATAAG
GGGACTTCTTTTAGCCAACTGAAAATATTCTTTAAAATTAATAAACGGGG
GGGGGGCCCTATTAAGGGCCGGGGGTTGGAAAATTTTCGAAAAATTAAGA
AGCGAGGGGGACGGTGTTACGGGGGGGGGGGTGGAAATTGTACTTATGAA
AACCCAAAAATAAGGAAAATATAGGCTAAAATCAGGCTTTTTGGAGCAAA
ATAAGGGGACTTCTTTTAGCCAACTGAAAATATTCTTTAAAATTAATAAA
CGGGGGGGGGGTCCTATTAAGGTCCGGGGGTTGGAAAATTTTCAAAAAAT
TAACAAGCGGGGGGACCATTTATTTGGCACCTAAGAGTATGTGGCTTGGT
CAAAAATATATTTTTCACCCGGACAGTTTCCGAAAAGACTATATTTTTTA
TTTTCGCCTAACAAAATTGTTCAAAACTGCCTGCTTCTTAGTGTTCTTAA
TCATTTTTTCTTAATTTGAAAAAGGGTTTTAAAGGGCCAACAGTTTCATG
AAAGCAATTTCTTGAGAAATTCGCTACAGGTGGTTTTACTTTCCTAATGA
TAATCACAAGAAACAATTATACTAAAGTCATATAAGTTTAATGAATGACT
TACAAATTTATGAAGTTCTCATTTATCCAATCTTTAGAAAATCAACCAAT
CATGGCAGATGAAAAAGAAGATACTCGAGAATGCGAAGCAATGCGAAAAA
TCTTTGTTGGTGGGTTACCTAAAGAAGTATCTGATGAGCAATTTTTAGAA
TACTTCTCCCAATTTGGTAATACTATAGATAATATTGTTATGAAATGTCC
ACAAACAGGTTCGTCCCGAGGTTTTGGTTTCATCACTTATGATGCCTCAT
CAGCTGTTGAAAATGTATTCCAAAAGCGTCCACATATCCTAGAAGGAAAG
ACAGTAGACTGTAAAAGAGCCATGCCTAAAGAAGTCAACAATGCATCTGC
CCATGCCAAAGTCACCAAATTATTTGTAGGGGGGCTAAAAGAAGGAGTAA
CTGAGGACACTCTTAAAGAATACTTTGAAAGCAGGCATCAAGAAAGTTGT
GGAAAAATTGTTAATATTGAATTGGTTGCTGGAAAACCTTTTGGATTTAT
TGAAACATCAGATAATGACTTTGCTGACAGATTGGTTATTAGTGAGGGTA
ACTTCTCTATTGATGGAAAGCAGATGCATCTACAGAAATCTGACAGTAAG
TAAAACCTATTGACCCTCACAAATCTATCTCGAATTTCTATTTTTGTTTG
TTTGATAGTCTTTGTATTGAAAATTATCATTGCTGATCATTTCATCAGAT
CAGATCATTTTTATTTTACTCAAACTGACTATTATAAATCTCTAACACTA
ACACTGTGTGTTATAGTGCCATAATAATCATCTTGCCAATTTTTTTCTCA
CAATAAATGATTTGATTAATTTACTTCAGGTACAGGTGGACGTGGTGGAG
GTCGTGGTGGACGCGGCGGCCGTGGAAGAGGGGGAGGTCGTGGTGGATTT
GGAGGCAGAGGTGCAGGTGGACGTGGTGGTTCTCGAGGAGGGTTTGGTGG
TCGTGGTGGTGGTTACAGCAATGGTGGATATGGTGGTTATAACCAAAGTC
AAAATGACAGTTATGGTCAAAGCTATGGACAAAATTACAATCAATACGGG
CAAGGAGGGTATGGCCAACAATCTTATGGTCAAAATTACCAGCAAAATTA
TGGAAATTATGATCAAACCAGTCAAGGGTATGGGAATTACAACCAAAGTT
ATGGTCAAGGGGGCAATCAAGGAGGACAAAGATGGTAAAGGTAAGATATT
GACTTTTTCCGTGTCACAGTCTCAGTATTAAAACTGCAACCAACAATAAC
TCAAACTGACTCAAACCATCAATTTTAAGCTTGTTTTCCTTCAAAGAAAC
AAATTTGATACCTTGAAATTCATAAATGATATTCTTCTCTTCTTTCTATA
GGTTAGGCAAATGTCACTTTAAGTCCATTAGCTACTAAGTTAAGCCAACG
AAACAACGATAGATGTACATAGGATCATTCCACAATGTAAATAGACCAAT
AATCACTGCTGCAACTAAGAGCGTCAACATGTTATTAGATCCAGTCTTAA
GTTAGATGTCATTTACAAACTTATCACTTGGACTGCTGCTTTATTACCGA
ATTTTTCGATAGAGTCGAACATTAATACTACTGCAAGATGTATCTTATAA
ATTGGTTTTATGTGTCGAAATGTTTTCGAAATGATTTTGAATTTAAATAA
AATGCTTTGTACACTTCGTAATAACTCAAACCAGTTAATCGATCGTTCTG
AAAACTATGTTCATTTTCATTCTGGTCCGTGCTTGAATATACTGTTAGTT
TTCTTATTCCCCTGATAAGTGAATTTTTTCTTGTTTGAGCCTTCTCTGGT
TTTAAATTTGCTTTGAGGCATAGATTTCGACTCGCTTTGTCATGTTACAT
ATCTATTGTGAAACTATGTGCTAGGTTTTTTGCTCTTATCTTATATGTGA
ACTGCAAAGAAAATAATTGAACATAACTTTTTGTTCTACTGTAAAGACTC
TTTTATTTTTCTCTGACAAACATGGAAAAGGCTAAATTAGTGGAGAAACA
AAATTTTGGAATTACCAAAATAAAATGTAATGGTCTATGTAATTAACTCA
CCTTTCTGGTAATGTTAGAAGCTCAAATTAAGACTAAGGTAGGGAGATCT
TCGTTCTTTTCATTAAAAAAATAATCCTTATAAAGCTTATTGCACTACTT
TCAATGCGACGAGATGAAGAACTTGTTCTTGGAAAATTATCTTTTCCTGG
CTTAAATCTTTTTTAATATTTGTGAAATTATGAATGAGATTATCTCGAAA
AATATTATTTCCTCAATTTTTAGTTGAACTTACTTTTTTTATTTCAGGAA
ATATGACTGATGAGTACGGATATATTTATAGCGAGCGAATTTGGAATTTG
AAACGAAAGAGACAAGAATGAGGTAATGCATCAATTTCAATACCGATTTT
TTGAAATTATCGAAGGAAAAGTTTGTACAACCATCTTACAGTAGTTATGT
TTTGAAATGAAACTGGAAATTTACGTTGGATGATTTATTTCATCACCCCT
TTTTAATCCAGCATCTAGATTAGATCAGTAATGATGACTTGCACTGGGTT
ATGAATCAATGATTCGAATAAGCATGACTGAACTGATATTACTGTTGAAA
CATAGAACATGTAATTTTTGACAGCTTAATAAACGATTACCTTAAGGGAA
CTTAATTTGGCGGGAACTAATTTTGACGAGCGGCAAAAATTTTTTTAATT
TCGGCGAGAACTTATTTTGGCAAATGATGAATTTTTTTAATTTTGGCAAA
TGACAGCGTAAATCTGTTCTATTTTACCTTTTTTGTCATTTTATTTTTAT
TTACTCTTGGGTGCCAAATAAACGGGGGGGGGGGGGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGGGTTGGAAAAAATCGAAAA
ATTAACAAGCGGGGGGGGGGGCGTTTATTTGGCACCTAAGAGTAAGCAAA
ATACCAAAAAATTTATTTCGATGAGAACTTATTTTGGTGAGTGAACAATA
TTTAATTTTGGCGAATTTTGTCTAAATTCGCCATATTCGCCAAAATTAGT
TCCTGTCAAAACAAGTTCCCTTATGGTATTAATGAACTCAATCCTTACTT
CTAGAGGTATCAAAAGACGACGTCCACTGATTAACCAAAAATGTGACCTT
CCTCAAAGCCATAAGGTAAGAAATAGTAAAAGTGGATCGATCCAAAATCA
AATGATTTCAGTGATGACATTCAAGTAAAAGACTAGAGTCGCAGAATACT
CCTGTTGAGAAGTCCTTGATAGACTGATGAAATCATTATTTTTTGTGTAG
GGTTTTGGAAATAGGGCAATTTGGCCCGAATACTTTCATCATTTTCTGGT
CTACGGAAATGATGAGGATATTTGTAATAATTTTGAATTATTTTTTTATA
ATTTTACATTTATCAAAATCAAATGATTTTAGTGATGACATTCAAGTAAA
AGACTAGAGTCGCAGAATACTCCTGTTGAGAAGTCCTTGATAGACTGATG
AAATCATTATCTTTTGTGTAGGGTTTGGGAAATAGGGCAATTTGGTCCGA
ATACTTTCATCATTTTCTGGTCTACGGAAAGGATGAAGATATTTGTAATA
ATTTTGAATTATTTTTTTACTTTTGCAGTTCTCGGAAATGCGGGATTCAA
CCTTCGAAATTATCCATGATTTGTAAAAAATTTTAACTTGTACATTGAAA
TAAACTAAACACTTTTTAAACGCATCTTTGGTAATTTTATTTACATTTTT
ACAATTTGCTGATCTTGCAAGAATTAGCAATTTACATACTTTGGGCGTAC
ACACTTTCGCGATTTTCGCGAATTTTGGCCTTTTACGCGAAGGTAAATAA
TG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006773TCONS_00006773Clytia hemisphaericatranscript
TCONS_00006772TCONS_00006772Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006772-proteinTCONS_00006772-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:140417..150118 -
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
HNRNPA1L2heterogeneous nuclear ribonucleoprotein A1-like 2 Homo Sapiens
HNRNPABheterogeneous nuclear ribonucleoprotein A/B isoform a Homo Sapiens
HNRNPA3PREDICTED: heterogeneous nuclear ribonucleoprotein A3 isoform X1 Homo Sapiens
HNRNPA0heterogeneous nuclear ribonucleoprotein A0 Homo Sapiens
HNRNPA1PREDICTED: heterogeneous nuclear ribonucleoprotein A1 isoform X1 Homo Sapiens
HNRNPA2B1heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
698.2	620.38	1511.19	1703.3	1200.69	962.96	595.1	643.48	298.52	333.99	293.24	265.15	352.56	340.79	390.36	410.7	465.37	451.56	168.32	222.98	532.81	543.96	483.29	465.88	507.03	587.61	442.76	463.76	400.74	439.76