TCONS_00006725 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006725
Unique NameTCONS_00006725
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length719

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006725 ID=TCONS_00006725|Name=TCONS_00006725|organism=Clytia hemisphaerica|type=transcript|length=719bp
TAGGCTGTGAACCGAGAGTTTGAGGTAAACCAGCCAACATGTCTGGATGG
GACGAAGAAGAAGCTGAAGCTCCAGCAGCAGCAATCGAAGTTCAAGAAAT
CAAATTATTTGGCAAATGGAACCCAAGTGAAGTTCAAGTCAGCGATATCA
GTTTGACTGATTACATTGCTGTCAAAGAACAACATGCCGTCTACCTTCCC
CACACTGCTGGAAGATATGCTGTCAAGCGTTTCAGAAAGGCACAATGTCC
AATTGTTGAACGATTGACTAACTCACTTATGATGCACGGTAGAAACAATG
GCAAGAAATTGTTGACTGTCCGTATTATCCGACATGCTTTTGAAATCATG
CATTTGCTTACTGGAGAGaACCCACTCCAAGTATTGTGTGATGCTATTAT
CAACAGTGGACCTCGTGAGGATTCTACCCGTATTGGTCGTGCTGGTACTG
TCCGTCGTCAAGCTGTTGATGTTGCTCCATTAAGACGTGTTAACCAAGCC
ATCTGGCTCTTGTGTACTGGTGCACGTGAAGCATCTTTCAGAAACATCAA
ATCTATTGCTGAATGCTTGGCTGATGAACTTATCAACGCTTCCAAGGTTA
GGGTCAATACAAGATTCTGGCACTGAAGACCAATAAGCTCttccggaaaa
tttttgtccgggggtagtgagaaatctgcaaaatttgccttgtttaaTAG
GCAAACTGGCTCTGgttag
Run BLAST on NCBI

protein sequence of TCONS_00006725-protein

>TCONS_00006725-protein ID=TCONS_00006725-protein|Name=TCONS_00006725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MSGWDEEEAEAPAAAIEVQEIKLFGKWNPSEVQVSDISLTDYIAVKEQHA
VYLPHTAGRYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLTVRIIRHA
FEIMHLLTGENPLQVLCDAIINSGPREDSTRIGRAGTVRRQAVDVAPLRR
VNQAIWLLCTGAREASFRNIKSIAECLADELINASKVRVNTRFWH
Run BLAST on NCBI

transcript from alignment at sc0000070:121421..130490+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006725 ID=TCONS_00006725|Name=TCONS_00006725|organism=Clytia hemisphaerica|type=transcript|length=9070bp|location=Sequence derived from alignment at sc0000070:121421..130490+ (Clytia hemisphaerica)
TAGGCATTTCCTAGATTCTTTAATTTGgattatatttttgaataaatatc
cctcaaaacaatttaatatgatttttcttagtttttgtgAATTTATTAAT
GATTTCACAGGGTTTCTAAGAATGTTTTAATTGCGCTTATACCAATTTTT
ATCCCTACAGAGCATGTTGCGCGGGCAATTTTTAACTCGGGCCCAGTTTT
TTCTACGCGGCTACGGCCCTCTTTTACCGCACATGTCAacatctttcttt
ctttttagagGCTGTGAACCGAGAGTTTGAGGTAAATTCACTACAATATT
gttcaaaatgtcacaaatttatCCATTTTCCAAGGAGCAATGGGACTCAA
AATTATTTCGCTCATTTTTTGGATATTATGATGTTTTCCATCgaagattt
tagttgttttggCTGTCACATTGATTGTACATCTGAAAAAATAGAGCAGC
ATCATGATTAGTAAATTTCTTTCTTATGGATTCGTTCAGGTAAACCAGCC
AACATGTCTGGATGGGACGAAGAAGAAGCTGAAGCTCCAGCAGCAGCAAT
CGAAGTTCAAGAAATCAAATTATTTGGCAAATGGAACCCAAGTGAAGTTC
AAGTCAGCGATATCAGTTTGACTGTAAGTTTTGATAGATACTACCAGGGG
GGATGCCAATTGAACTGTTCAATGCCCGATCGCAATTCGATTATGTTTCA
ATAAGGTTTGATTGTAATTAGACNGATGCCCGATGGCAATTCTATTATGG
TTCAGTAAGGTTTGATTGTAATTAGACATTCAATATGTGATGAGCGCGAC
GAATATGCGATCTCAATCTTGCAAGGACTAGGCTTTTTCATAGGACAAAG
TAAGTTGAATGAGAACAAAGTTCATATTTGACATCGTGGCACATGATAAG
GTTTTTGATAAGAATGTAGCTATTTTACTCAGATGGTAATTTTTCAAGCC
CCTTCAGAGGTTAACTTTGTGTAAGAAAGTTATGGTCATCTGTTTTCAGG
AAAGTCCTACCCAAAAGTGGTTAGTGGTGTTGTCATGCTCAGGACTTTTT
CAAGCTCAAAATCAATAAGTAGCCTGAAAAAATCCTGGGACCGTACCATT
GAAACACACTTCTTATGGCGCGCAAAAGCGctataaaatacttttttttt
ataatacttgcttttcaaaaatataattcatcttttaaaaaattatacTG
TCTTTCCTAATatcaaataagttgaaaataattgtcaacaacaacaatAT
GCTCTACCAGAGGGAGGGAGccttataacaaaacaaaaattcaaaacttc
attttttgtagTACTTTACGATAAGTTTcacaatcatcagctacataCAA
AATGATCTAAGTAGTTGGGTTGTAAAATGTCTtcaaattataataaaaaa
ttgaaacaaaagaaaaaagatagtGCTATTCTCAGGGGTCCGTTAGTCCA
TTagtatcttttcaaatatataatacttcttttcaaatgtaatacttcat
ttcaaatataatacgtcttttcaaatataatactactttttcaaataaaa
taataatgtgAGTTACGAGTTGGCCCTGCAGAGTTAGGAGTTAGTTTTAG
TGGGTTACGAGTTACAAATGCACataaatgtgattttttaagATGAAGAT
TTCAGGTTCAGTACATGGAAATCACAACTTGCAACAAAAAGGGACAGAAA
AACCAGAGTCAAAAGTTCCTGACACACGAAGCAATAAAAGCTCTGCGGGG
GGGCATTGACTGAACCTTTCCAGTTAGCAGCAGTTTTTAGCACATTTACA
GTCCGCAGGAAACACTAACAAATGAAACTTATTGACTGTCTATATCAATC
ATTGCTGGTAGAAAGATGGACTCCCTCTAAATGTTCTATGACAGAAGAAA
ACAGAAGAGGGGGTGGGTACCTGCCCTGGACCCTGTTTTCTCAACTCTCT
CCCCCAGCCCCATGCAAACAAGTGATTTGAATGTTTCtttgtaattcttt
tttgaAGGCTCTTTGCTTGAAAGGTATATCTCAGTTTCGAAGAGTGAGTC
CCTGTGATTTATTCTGATCTTCTAGAAGAATGTTGTTTATGCTCTATCCT
AAGTTGGTTATGGACTAAAGTTGATTACCGATTCTTCGTTCAGTTTAAGT
TTTAATCACTGTGTAATAATATTGCCCTTAATTccatcatttttcaaatt
tttgcttgcgAATTAGCTTTAGGCAAATTTCAATATAAACATAGTCAGAA
TTTTGCAAAAACTGCAAATCAAATGTTCCTGGCGAGTGCATAAAGAAGCC
ATGGTCACAAAATTTCGAGTTAACTAAAAGTATTAAGGTCACAATCAAAG
ATTTAGGTACATCCTCCAGGTCTGGCCATAAACAAAACCTCCCACGTGCC
AAAGTAGCACTCTATGTTACAGATTATGGCGTGCTATTAGCATTCTCAAA
GGAGATTTTGTACAAACTTGTATATTTTAGAAATAGCACTCGCAAATCAT
TTTAGGTGTGTACCAGCGTGTGCGAGTGCAATAGCACGCCATACAGGGCC
AGGCCTGATCCTCACAAAAATGAGGTAGATAAATCAGTCTATGATGTCAC
TAAAAGTTAGTTCGAAATTTTAACGTCTGCACCTGAAATTTTCAACTCAC
AACTCGCACCTTTATTATTTCGCAACTCGGAAGGACCAACTCACAACTCA
TACTTTATCAAATAAGTATTatgttcaaaaaagaaaagcgCACCATACAC
TACAAGGTTACTAACTaaagatttttggacctacctagggcgtcctttaa
attaacctgtgtcctTCTGCCTGTATGCAAGCTTTTCTGAGGATTGGCTT
TTTCAATTTCTGGCTGGAAATAAGCtggcaaaaagttttttggcaatttt
tgagACTTCTTCATTatgtttttctgaatttttgcataaagatgtaAATT
AGCAACACTCAAATATGGTCCTATACGTTTCTTATTTTACTTCCTTTTAT
ATTTCCATTCAATAATTATCATTTGGTGTAGTTCCAATATACATTGCTTG
TTTTTCAATGGgttttccaagaaaaaattatacaggggcagggctgcaaa
taatcgtcggtcatcggtcaatgtccgactgaaaaagctatttgaccgac
tgaaaatcttttgtttcggtcatgatgtccgaatgaaaaaagaataaacc
attaacttgagagttgaaaataaatacttagcctattcttttaatactcg
cttcctttgtagctttcagggtgtttctaagatcacttttatcaacccac
tttctttgtatataactcttttaagggtgtttctaaattacttttgtcaa
cttgctttcttcgtaaccttctttgtttctaagatcacttttatcgactc
gctttctttgtNtaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcgactcgcttacttcgtaacttt
caagagtgtttctaagatcacttttatcaactctctttcttcttaacttt
taacagtgtttctaagttaacttttatcaacttccTTTCTTCTTAACttc
caagggtgtttctaagatcacttttatcgaatcaagttctctgttatata
cagtaacaaactgttcaaaggcaacttttatttttcctactcgttttctc
cgtaactttaaaaaaaattacactgaatgaccgacaggattttgagtttg
accgacaggatttcatttctttCGGACACGATgtccgattgactaaaaat
gtttatttgcagccctgccAGTCCCTGCAGGGgtataaacaaactttttt
gccAATTTATCTGGAAATTTCATAATAACAAATCTAGAAATAAGGTAAAA
CTCGCCTGgaagttaaaattttctctGAAAGGGGCTGGAAACAAGTTTTT
GTCATCTCTTGAGGGAAGAACCCCCTGatcccaatcaaaaataaacccca
gttttgtgacatttttactGTTAGCCACTAAATTGACCATAACTTGAGAA
AATATATCCTACACTTAGGATTGCTTTGGTGGTTAAGCTGAGGAAATTTA
GCTATCCATTGCATAAAGGACGAATATTTGTGGCTTACTTAAAGGCAAGT
TACAAGGAAATGAAGCGTGAGCAAAAAATGTGGCTGATCCTACCAAGAAA
TTTTGAAGGCTGAGTTCTCAATAATGGAAACAGTCAGAAATATACTTTCT
TTTCAGCATTGACAGCAAAGGGCTAAATTTCTCATTAGCTGCACTGATTT
GTGGCTTACAGTTTGTTAAGTGGGCAAAAATGTGTCTCACATTATTTAAG
TTTTTGACACTCAATCATTAAAGTATAACACCTGTAGGTgtaaaaacata
caaaaatttTGTTGTAAGTACAATTTTGTGGCTTATAAAGTCACattaaa
aattattgaaaagtaaGCCACAAAAAACTACATTTAACAGCTAGTATGTA
CATttaacattttctgaaaaattcaacctttcctctGTCAAGTTAAGAAA
GTCCCATTCTAAGATCTCTTATCTAATTTGTGTGGCTTACATTTCtaaaa
catatacaaattttgagttgaagccacattttttgCTCAATTAAcgagaa
aaaaagtttaattcaTAATGTCTTAGTATTTCCCTTAacattgtaaaatt
tcaagacttatcgattttttaagatttcgtCAGCTATGAGAAAAGGttgt
ttttgggcatttttcaaaatgtcacacTGTTTTTGATTGGGATCCCCTGT
AAAGCCTTTATGCCTTCAATTGACTATCTCTTGGACAAGTTATGTCAATA
CAGAACAATCCCAATCAAATTATATGTCAATGGCAACCAAAAACAAGTTT
TGTTAAGAGCAGAAGCTTTTCTATTTTATTAAATCATTTGCATGCTTTAA
TATGTTTCTCACTAACACTAGAATTTAAAAGAATACCTCATAACTATGTT
TTAGAATTATACTTTTACTTTCTTTTGACTGTGGCTATGGTATTGAATTT
ACTTCAGAGACAAAAAACTTTGTCAAAATGTGATACAATATTTTCTACCG
TTTAGGATTACATTGCTGTCAAAGAACAACATGCCGTCTACCTTCCCCAC
ACTGCTGGAAGATATGCTGTCAAGCGTTTCAGAAAGGCACAATGTCCAAT
TGTTGAACGATTGACTAACTCACTTATGATGCACGGTAGAAACAATGGCA
AGAAATTGTTGACTGTCCGTATTATCCGACATGCTTTTGAAATCATGCAT
TTGCTTACTGGAGAGGTTAGTAGTTTTTTGGGTCAAATAATTAATTTAAA
GCAAATTGGATACTCATTGTACTTCAAAAATGTTCCATCTGCCTACATTT
TTGTATTGAATTGATCTCTGAAGATGTTGCTTGTGTATTAATATTCATAT
CTTGGCTACTtggggctgttccattaaaaaaccatacagtgggggggggt
ggacgaaccttttcaagtcaaaaaaaattattgaaaatatgtAGATACCG
CTGGAAAATGAGAAGATTTGAACaaatacccttggaaaaatCCTTTTGAt
gccttaaagtgagggtggacgaactaaaatcagtcttttaccccctggaa
attttagaataacttttaaccccatggaaaaatgaaaaaacaccccctgg
aaCTTTTTCTCGGaataccctctggaaatgttcgtccaccccctgtatgg
atataaaatagaATGACCCTTGGCTATCTAGATTAGGTTCTGAACGTTTT
GCAATGATGTAAATTTTACACCTTGACATTGTCATGGATGATGTTTGATC
GATAGGACTGAGCAAAACTAATGCATTAGCAGGTTATTTCACATAATTTC
TTCTCGTTGTAAGATACAGTCAGGGCGTTGCTTCTTTTCACTATTGGACT
GGGGTGTCAAAACTGACTGAAATCAAAATCCCATATTGAAGCCTTAATTA
TGCTTGGCAACATCCTAATTTTGTCATGTATGTTGAGCTTTTATGGAAAC
AGCTCTCTTATTCAATCTTACATTCAAGCTAAGTCAACAGTAACAAAATG
TTCTTTCTTTCAATCTCTGTTGCATTTAACTCTTAGAAGGAATCccaaat
ttgattgaaattgaaaagacaAAACTTTGTTTCCGCTGTTGTGTGTTTTG
TTAATgtagtgtctataataatttcATGACATAAATTTAAGCCCAGAATG
TTTTGCTATGATgtaaattttttaaccttgacgCTATCAATGGATGATGT
TTGATCGATAGGACTGAGCAGAACCACAAAATAaacagtgtttttttttt
ttttttttttttttaatttNTGTTTTGCTatgatgtaatttttttaacct
tgacGCTATCAATGGATGATGTTTGATCGATAGGACTGAGCAGAACCACA
AAATAAAcagtgttttttgttttgttttgtttttttaatttaagaTGCAG
TCAGGGCGTTGCTTCTTTTCACATTTTGAACTGGGGTGTCAAAACTGACT
AAAATCTAAATTCCATATTGAAAACTTTATAATGTTTGGCAACATCAATT
TGTCAACACAGCTAATTTTTCATGGAGATAACTCTCTGTGTTCATACTTA
AGTTTGAGGTGGTTTTGGGCAGGGTCATGGGATTGCCTTTGATACTTCTA
ATAGAATCGAAGACTTTATTAGATGACCAACACTAATCACTGTAACATAC
AACCATTCTGTTCCACAACATGAACAGTGGAATGGCCCCATGTTAGTTAA
caccttcaaaattttaaatgtgAATAAGAGAATAGGGCTGTTTACTGTCT
TTATTTCTCTAgcgaaattttgaaaagttttatacCTTCTGAAATAGAAA
TTCTACTCGggaaatacatgttttttttataagcaagtatctgtccctat
atcaggctcgcattatgcttagcattctattgtttttaaacaatagccat
tgtttaggtaccaaaaactgagcctgcatatgcttataaacgttatgctt
ataaaaaagaaaacacgtAGGTCACGGGATTGCCTTTGATACTTCTAATA
GAATTGAAGACTTTATTAGATGACCAATACTAATCACACTAACATACAAC
CATTCTGTTCCACAACATGAACAGTGGGATGGCCCCATGTTGGTTCACAA
ATTGTGCAAAACTAACCGcaaattttcaggatttatTCTTTCCCTTTTTT
CTTAGAAAGTCATGGCGTTGCTTCTTTTTCCCTTGTGAAACTGGGGTGTC
AAAACTGACTGACAACAAATGAATTTGCGTTTTTCTTCATAGCTTGGATT
TTCATAATTTGATGCTATAAACAGGCAATTCCAATATTCTTTCAACTTAG
ATTATATTCATTCGTCCTGTTTCTACAAGAGAACTTTTTCTTTAGTCCTA
CTCCTGTATTGCCAGGGCGTTGCTTATTGTCTTATATAGACTCTGGGTGT
CAAAACTGGCATAAATAAAATTTCAAAGAAAATGTTTTACATTTGCATTC
TTCTATGTGCAATGCAAAAAAAGTGTTTCTTCGATACAACCTTGGCATGT
CTCTAAGATTGAATGTCAAAGGCGATTGATTTTGTTTAAACCATTTGACC
ATTCTGTTCCACAACATGAACAGTGGGATGGCCCCATGTTGGTTCACAAA
TTGTGCAAAACTAACTGCAAATTTTCAGGATTTATTCTTTCCCTTTTTTC
TTAGAAAGTCATGGCGTTGCTTCTTTTTCCCTTGTGAAACTGGGGTGTCA
AAACTGactgaaaacaaaggaatttgCGTTTTTCTTCATAGCTTGGATTT
TCATAATTTGATGCTATAAACTGGCAATTCCAATATTCTTTCAACTTAGA
TTATATTCATTCGTCCTGTTTCTACAAGAGAACTATTTCTTTAGTCCTAC
TCCTGTATTGCCAGGGCGTTGCTTATTGTCTTATATAGACTCTGGGTGTC
AAAACTGGcataaataaaatttcaaagaaaactgTTTACATTTGCATTCT
TCTATGTGCAATGCAAAAAAGTGTTTCTTCGGTACAACCTTCACATGTCT
CTAAGATTGAATGTCAATGGCGATTGATTTTGTTTAAACCATTTGACTat
cgaatgtttacatttttagaACCCACTCCAAGTATTGTGTGATGCTATTA
TCAACAGTGGACCTCGTGAGGATTCTACCCGTATTGGTCGTGCTGGTACT
GTCCGTCGTCAAGCTGTTGATGTTGCTCCATTAAGACGTGTTAACCAAGC
CATCTGGCTCTTGTGTACTGGTGCACGTGAAGCATCTTTCAGAAACATCA
AATCTATTGCTGAATGCTTGGCTGATGAACTTATCAACGCTTCCAAGGTT
AGGGTCAATACAAGATTCTGGCACTGAAGACCAATAAGCTCttccggaaa
atttttgtccgggggtagtgagaaatctgcaaaatttgccttgtttaaTA
GGCAAACTGGCTCTGgttag

Coding sequence (CDS) from alignment at sc0000070:121421..130490+

>TCONS_00006725 ID=TCONS_00006725|Name=TCONS_00006725|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000070:121421..130490+ (Clytia hemisphaerica)
ATGTCTGGATGGGACGAAGAAGAAGCTGAAGCTCCAGCAGCAGCAATCGA
AGTTCAAGAAATCAAATTATTTGGCAAATGGAACCCAAGTGAAGTTCAAG
TCAGCGATATCAGTTTGACTGATTACATTGCTGTCAAAGAACAACATGCC
GTCTACCTTCCCCACACTGCTGGAAGATATGCTGTCAAGCGTTTCAGAAA
GGCACAATGTCCAATTGTTGAACGATTGACTAACTCACTTATGATGCACG
GTAGAAACAATGGCAAGAAATTGTTGACTGTCCGTATTATCCGACATGCT
TTTGAAATCATGCATTTGCTTACTGGAGAGaACCCACTCCAAGTATTGTG
TGATGCTATTATCAACAGTGGACCTCGTGAGGATTCTACCCGTATTGGTC
GTGCTGGTACTGTCCGTCGTCAAGCTGTTGATGTTGCTCCATTAAGACGT
GTTAACCAAGCCATCTGGCTCTTGTGTACTGGTGCACGTGAAGCATCTTT
CAGAAACATCAAATCTATTGCTGAATGCTTGGCTGATGAACTTATCAACG
CTTCCAAGGTTAGGGTCAATACAAGATTCTGGCACTGAATGTCTGGATGG
GACGAAGAAGAAGCTGAAGCTCCAGCAGCAGCAATCGAAGTTCAAGAAAT
CAAATTATTTGGCAAATGGAACCCAAGTGAAGTTCAAGTCAGCGATATCA
GTTTGACTGATTACATTGCTGTCAAAGAACAACATGCCGTCTACCTTCCC
CACACTGCTGGAAGATATGCTGTCAAGCGTTTCAGAAAGGCACAATGTCC
AATTGTTGAACGATTGACTAACTCACTTATGATGCACGGTAGAAACAATG
GCAAGAAATTGTTGACTGTCCGTATTATCCGACATGCTTTTGAAATCATG
CATTTGCTTACTGGAGAGaACCCACTCCAAGTATTGTGTGATGCTATTAT
CAACAGTGGACCTCGTGAGGATTCTACCCGTATTGGTCGTGCTGGTACTG
TCCGTCGTCAAGCTGTTGATGTTGCTCCATTAAGACGTGTTAACCAAGCC
ATCTGGCTCTTGTGTACTGGTGCACGTGAAGCATCTTTCAGAAACATCAA
ATCTATTGCTGAATGCTTGGCTGATGAACTTATCAACGCTTCCAAGGTTA
GGGTCAATACAAGATTCTGGCACTGAATGTCTGGATGGGACGAAGAAGAA
GCTGAAGCTCCAGCAGCAGCAATCGAAGTTCAAGAAATCAAATTATTTGG
CAAATGGAACCCAAGTGAAGTTCAAGTCAGCGATATCAGTTTGACTGATT
ACATTGCTGTCAAAGAACAACATGCCGTCTACCTTCCCCACACTGCTGGA
AGATATGCTGTCAAGCGTTTCAGAAAGGCACAATGTCCAATTGTTGAACG
ATTGACTAACTCACTTATGATGCACGGTAGAAACAATGGCAAGAAATTGT
TGACTGTCCGTATTATCCGACATGCTTTTGAAATCATGCATTTGCTTACT
GGAGAGaACCCACTCCAAGTATTGTGTGATGCTATTATCAACAGTGGACC
TCGTGAGGATTCTACCCGTATTGGTCGTGCTGGTACTGTCCGTCGTCAAG
CTGTTGATGTTGCTCCATTAAGACGTGTTAACCAAGCCATCTGGCTCTTG
TGTACTGGTGCACGTGAAGCATCTTTCAGAAACATCAAATCTATTGCTGA
ATGCTTGGCTGATGAACTTATCAACGCTTCCAAGGTTAGGGTCAATACAA
GATTCTGGCACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003769XLOC_003769Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006725-proteinTCONS_00006725-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006725-exon-sc0000070-1491911889:121421..121423TCONS_00006725-exon-sc0000070-1491911889:121421..121423Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1510915933:121421..121423TCONS_00006725-exon-sc0000070-1510915933:121421..121423Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1575043694:121421..121423TCONS_00006725-exon-sc0000070-1575043694:121421..121423Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1491911889:121681..121701TCONS_00006725-exon-sc0000070-1491911889:121681..121701Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1510915933:121681..121701TCONS_00006725-exon-sc0000070-1510915933:121681..121701Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1575043694:121681..121701TCONS_00006725-exon-sc0000070-1575043694:121681..121701Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1491911889:121910..122043TCONS_00006725-exon-sc0000070-1491911889:121910..122043Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1510915933:121910..122043TCONS_00006725-exon-sc0000070-1510915933:121910..122043Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1575043694:121910..122043TCONS_00006725-exon-sc0000070-1575043694:121910..122043Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1491911889:127076..127285TCONS_00006725-exon-sc0000070-1491911889:127076..127285Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1510915933:127076..127285TCONS_00006725-exon-sc0000070-1510915933:127076..127285Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1575043694:127076..127285TCONS_00006725-exon-sc0000070-1575043694:127076..127285Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1491911889:130140..130490TCONS_00006725-exon-sc0000070-1491911889:130140..130490Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1510915933:130140..130490TCONS_00006725-exon-sc0000070-1510915933:130140..130490Clytia hemisphaericaexon
TCONS_00006725-exon-sc0000070-1575043694:130140..130490TCONS_00006725-exon-sc0000070-1575043694:130140..130490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:121421..130490 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2366.09	2390.67	2435.03	2222.08	1130.63	877.828	1483.28	1349.83	4342.16	4278.96	4445.45	5141.88	5957.34	5788.21	5365.84	5375.94	5286.97	5826.21	3056.54	3438.33	5306.44	5322.97	3621.33	3582.95	1397.18	1543.46	4774.18	4962.52	3148.33	3179.02
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023798Ribosomal_S7_dom
IPR005716Ribosomal_S5/S7_euk/arc
IPR000235Ribosomal_S5/S7
IPR020606Ribosomal_S7_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00006725 vs. Swiss-Prot (Human)
Match: RS5 (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 313.153 bits (801), Expect = 1.107e-107
Identity = 144/172 (83.72%), Postives = 163/172 (94.77%), Query Frame = 3 
Query:   96 EIKLFGKWNPSEVQVSDISLTDYIAVKEQHAVYLPHTAGRYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLTVRIIRHAFEIMHLLTGENPLQVLCDAIINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINASKVRVNT 611
            +IKLFGKW+  +VQ++DISL DYIAVKE++A YLPH+AGRYA KRFRKAQCPIVERLTNS+MMHGRNNGKKL+TVRI++HAFEI+HLLTGENPLQVL +AIINSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLLCTGAREA+FRNIK+IAECLADELINA+K   N+
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNS 187
The following BLAST results are available for this feature:
BLAST of TCONS_00006725 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS51.107e-10783.7240S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
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