TCONS_00006725-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006725-protein
Unique NameTCONS_00006725-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length195

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006725-protein ID=TCONS_00006725-protein|Name=TCONS_00006725-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MSGWDEEEAEAPAAAIEVQEIKLFGKWNPSEVQVSDISLTDYIAVKEQHA
VYLPHTAGRYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLTVRIIRHA
FEIMHLLTGENPLQVLCDAIINSGPREDSTRIGRAGTVRRQAVDVAPLRR
VNQAIWLLCTGAREASFRNIKSIAECLADELINASKVRVNTRFWH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003769XLOC_003769Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006725TCONS_00006725Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023798Ribosomal_S7_dom
IPR005716Ribosomal_S5/S7_euk/arc
IPR000235Ribosomal_S5/S7
IPR020606Ribosomal_S7_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023798Ribosomal protein S7 domainPFAMPF00177Ribosomal_S7coord: 63..187
e-value: 4.8E-27
score: 94.3
IPR023798Ribosomal protein S7 domainGENE3D1.10.455.10coord: 21..192
e-value: 1.5E-75
score: 252.7
IPR023798Ribosomal protein S7 domainSUPERFAMILY47973Ribosomal protein S7coord: 21..187
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealTIGRFAMTIGR01028TIGR01028coord: 20..187
e-value: 6.7E-78
score: 258.6
IPR005716Ribosomal protein S5/S7, eukaryotic/archaealCDDcd14867uS7_Eukaryotecoord: 22..186
e-value: 2.17607E-120
score: 340.685
IPR000235Ribosomal protein S5/S7PIRSFPIRSF002122RPS7p_RPS7a_RPS5e_RPS7ocoord: 4..192
e-value: 2.0E-35
score: 120.5
IPR020606Ribosomal protein S7, conserved sitePROSITEPS00052RIBOSOMAL_S7coord: 74..100

Blast
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BLAST of TCONS_00006725-protein vs. Swiss-Prot (Human)
Match: RS5 (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 318.161 bits (814), Expect = 3.163e-112
Identity = 152/191 (79.58%), Postives = 172/191 (90.05%), Query Frame = 0 
Query:    1 MSGWDEEEAEAPAAAIEVQEIKLFGKWNPSEVQVSDISLTDYIAVKEQHAVYLPHTAGRYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLLTVRIIRHAFEIMHLLTGENPLQVLCDAIINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINASKVRVNT 191
            M+ W   E  APA A E  +IKLFGKW+  +VQ++DISL DYIAVKE++A YLPH+AGRYA KRFRKAQCPIVERLTNS+MMHGRNNGKKL+TVRI++HAFEI+HLLTGENPLQVL +AIINSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIWLLCTGAREA+FRNIK+IAECLADELINA+K   N+
Sbjct:    1 MTEW---ETAAPAVA-ETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNS 187
The following BLAST results are available for this feature:
BLAST of TCONS_00006725-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS53.163e-11279.5840S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
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