XLOC_003769 (gene) - C. hemisphaerica

Overview
NameXLOC_003769
Unique NameXLOC_003769
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000070:121246..130490+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003769 ID=XLOC_003769|Name=XLOC_003769|organism=Clytia hemisphaerica|type=gene|length=9245bp|location=Sequence derived from alignment at sc0000070:121246..130490+ (Clytia hemisphaerica)
GCGGGGGGTGTAAGTGTGTAGTGCAGTGGCAGAATTCAATGAATCACAGC TTTGTTTGAAATGATTTGCAATGAATTTATAGTCATAAGCAGAAACAACT TAATAAACAAACTGTTTGTTACCTGAAGAATATCAGCgtcattttgtttt cattattaCACAACGTGCGTTTGTATAGGCATTTCCTAGATTCTTTAATT TGgattatatttttgaataaatatccctcaaaacaatttaatatgatttt tcttagtttttgtgAATTTATTAATGATTTCACAGGGTTTCTAAGAATGT TTTAATTGCGCTTATACCAATTTTTATCCCTACAGAGCATGTTGCGCGGG CAATTTTTAACTCGGGCCCAGTTTTTTCTACGCGGCTACGGCCCTCTTTT ACCGCACATGTCAacatctttctttctttttagagGCTGTGAACCGAGAG TTTGAGGTAAATTCACTACAATATTgttcaaaatgtcacaaatttatCCA TTTTCCAAGGAGCAATGGGACTCAAAATTATTTCGCTCATTTTTTGGATA TTATGATGTTTTCCATCgaagattttagttgttttggCTGTCACATTGAT TGTACATCTGAAAAAATAGAGCAGCATCATGATTAGTAAATTTCTTTCTT ATGGATTCGTTCAGGTAAACCAGCCAACATGTCTGGATGGGACGAAGAAG AAGCTGAAGCTCCAGCAGCAGCAATCGAAGTTCAAGAAATCAAATTATTT GGCAAATGGAACCCAAGTGAAGTTCAAGTCAGCGATATCAGTTTGACTGT AAGTTTTGATAGATACTACCAGGGGGGATGCCAATTGAACTGTTCAATGC CCGATCGCAATTCGATTATGTTTCAATAAGGTTTGATTGTAATTAGACNG ATGCCCGATGGCAATTCTATTATGGTTCAGTAAGGTTTGATTGTAATTAG ACATTCAATATGTGATGAGCGCGACGAATATGCGATCTCAATCTTGCAAG GACTAGGCTTTTTCATAGGACAAAGTAAGTTGAATGAGAACAAAGTTCAT ATTTGACATCGTGGCACATGATAAGGTTTTTGATAAGAATGTAGCTATTT TACTCAGATGGTAATTTTTCAAGCCCCTTCAGAGGTTAACTTTGTGTAAG AAAGTTATGGTCATCTGTTTTCAGGAAAGTCCTACCCAAAAGTGGTTAGT GGTGTTGTCATGCTCAGGACTTTTTCAAGCTCAAAATCAATAAGTAGCCT GAAAAAATCCTGGGACCGTACCATTGAAACACACTTCTTATGGCGCGCAA AAGCGctataaaatactttttttttataatacttgcttttcaaaaatata attcatcttttaaaaaattatacTGTCTTTCCTAATatcaaataagttga aaataattgtcaacaacaacaatATGCTCTACCAGAGGGAGGGAGcctta taacaaaacaaaaattcaaaacttcattttttgtagTACTTTACGATAAG TTTcacaatcatcagctacataCAAAATGATCTAAGTAGTTGGGTTGTAA AATGTCTtcaaattataataaaaaattgaaacaaaagaaaaaagatagtG CTATTCTCAGGGGTCCGTTAGTCCATTagtatcttttcaaatatataata cttcttttcaaatgtaatacttcatttcaaatataatacgtcttttcaaa tataatactactttttcaaataaaataataatgtgAGTTACGAGTTGGCC CTGCAGAGTTAGGAGTTAGTTTTAGTGGGTTACGAGTTACAAATGCACat aaatgtgattttttaagATGAAGATTTCAGGTTCAGTACATGGAAATCAC AACTTGCAACAAAAAGGGACAGAAAAACCAGAGTCAAAAGTTCCTGACAC ACGAAGCAATAAAAGCTCTGCGGGGGGGCATTGACTGAACCTTTCCAGTT AGCAGCAGTTTTTAGCACATTTACAGTCCGCAGGAAACACTAACAAATGA AACTTATTGACTGTCTATATCAATCATTGCTGGTAGAAAGATGGACTCCC TCTAAATGTTCTATGACAGAAGAAAACAGAAGAGGGGGTGGGTACCTGCC CTGGACCCTGTTTTCTCAACTCTCTCCCCCAGCCCCATGCAAACAAGTGA TTTGAATGTTTCtttgtaattcttttttgaAGGCTCTTTGCTTGAAAGGT ATATCTCAGTTTCGAAGAGTGAGTCCCTGTGATTTATTCTGATCTTCTAG AAGAATGTTGTTTATGCTCTATCCTAAGTTGGTTATGGACTAAAGTTGAT TACCGATTCTTCGTTCAGTTTAAGTTTTAATCACTGTGTAATAATATTGC CCTTAATTccatcatttttcaaatttttgcttgcgAATTAGCTTTAGGCA AATTTCAATATAAACATAGTCAGAATTTTGCAAAAACTGCAAATCAAATG TTCCTGGCGAGTGCATAAAGAAGCCATGGTCACAAAATTTCGAGTTAACT AAAAGTATTAAGGTCACAATCAAAGATTTAGGTACATCCTCCAGGTCTGG CCATAAACAAAACCTCCCACGTGCCAAAGTAGCACTCTATGTTACAGATT ATGGCGTGCTATTAGCATTCTCAAAGGAGATTTTGTACAAACTTGTATAT TTTAGAAATAGCACTCGCAAATCATTTTAGGTGTGTACCAGCGTGTGCGA GTGCAATAGCACGCCATACAGGGCCAGGCCTGATCCTCACAAAAATGAGG TAGATAAATCAGTCTATGATGTCACTAAAAGTTAGTTCGAAATTTTAACG TCTGCACCTGAAATTTTCAACTCACAACTCGCACCTTTATTATTTCGCAA CTCGGAAGGACCAACTCACAACTCATACTTTATCAAATAAGTATTatgtt caaaaaagaaaagcgCACCATACACTACAAGGTTACTAACTaaagatttt tggacctacctagggcgtcctttaaattaacctgtgtcctTCTGCCTGTA TGCAAGCTTTTCTGAGGATTGGCTTTTTCAATTTCTGGCTGGAAATAAGC tggcaaaaagttttttggcaatttttgagACTTCTTCATTatgtttttct gaatttttgcataaagatgtaAATTAGCAACACTCAAATATGGTCCTATA CGTTTCTTATTTTACTTCCTTTTATATTTCCATTCAATAATTATCATTTG GTGTAGTTCCAATATACATTGCTTGTTTTTCAATGGgttttccaagaaaa aattatacaggggcagggctgcaaataatcgtcggtcatcggtcaatgtc cgactgaaaaagctatttgaccgactgaaaatcttttgtttcggtcatga tgtccgaatgaaaaaagaataaaccattaacttgagagttgaaaataaat acttagcctattcttttaatactcgcttcctttgtagctttcagggtgtt tctaagatcacttttatcaacccactttctttgtatataactcttttaag ggtgtttctaaattacttttgtcaacttgctttcttcgtaaccttctttg tttctaagatcacttttatcgactcgctttctttgtNtaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcgactcgcttacttcgtaactttcaagagtgtttctaagatcactttt atcaactctctttcttcttaacttttaacagtgtttctaagttaactttt atcaacttccTTTCTTCTTAACttccaagggtgtttctaagatcactttt atcgaatcaagttctctgttatatacagtaacaaactgttcaaaggcaac ttttatttttcctactcgttttctccgtaactttaaaaaaaattacactg aatgaccgacaggattttgagtttgaccgacaggatttcatttctttCGG ACACGATgtccgattgactaaaaatgtttatttgcagccctgccAGTCCC TGCAGGGgtataaacaaacttttttgccAATTTATCTGGAAATTTCATAA TAACAAATCTAGAAATAAGGTAAAACTCGCCTGgaagttaaaattttctc tGAAAGGGGCTGGAAACAAGTTTTTGTCATCTCTTGAGGGAAGAACCCCC TGatcccaatcaaaaataaaccccagttttgtgacatttttactGTTAGC CACTAAATTGACCATAACTTGAGAAAATATATCCTACACTTAGGATTGCT TTGGTGGTTAAGCTGAGGAAATTTAGCTATCCATTGCATAAAGGACGAAT ATTTGTGGCTTACTTAAAGGCAAGTTACAAGGAAATGAAGCGTGAGCAAA AAATGTGGCTGATCCTACCAAGAAATTTTGAAGGCTGAGTTCTCAATAAT GGAAACAGTCAGAAATATACTTTCTTTTCAGCATTGACAGCAAAGGGCTA AATTTCTCATTAGCTGCACTGATTTGTGGCTTACAGTTTGTTAAGTGGGC AAAAATGTGTCTCACATTATTTAAGTTTTTGACACTCAATCATTAAAGTA TAACACCTGTAGGTgtaaaaacatacaaaaatttTGTTGTAAGTACAATT TTGTGGCTTATAAAGTCACattaaaaattattgaaaagtaaGCCACAAAA AACTACATTTAACAGCTAGTATGTACATttaacattttctgaaaaattca acctttcctctGTCAAGTTAAGAAAGTCCCATTCTAAGATCTCTTATCTA ATTTGTGTGGCTTACATTTCtaaaacatatacaaattttgagttgaagcc acattttttgCTCAATTAAcgagaaaaaaagtttaattcaTAATGTCTTA GTATTTCCCTTAacattgtaaaatttcaagacttatcgattttttaagat ttcgtCAGCTATGAGAAAAGGttgtttttgggcatttttcaaaatgtcac acTGTTTTTGATTGGGATCCCCTGTAAAGCCTTTATGCCTTCAATTGACT ATCTCTTGGACAAGTTATGTCAATACAGAACAATCCCAATCAAATTATAT GTCAATGGCAACCAAAAACAAGTTTTGTTAAGAGCAGAAGCTTTTCTATT TTATTAAATCATTTGCATGCTTTAATATGTTTCTCACTAACACTAGAATT TAAAAGAATACCTCATAACTATGTTTTAGAATTATACTTTTACTTTCTTT TGACTGTGGCTATGGTATTGAATTTACTTCAGAGACAAAAAACTTTGTCA AAATGTGATACAATATTTTCTACCGTTTAGGATTACATTGCTGTCAAAGA ACAACATGCCGTCTACCTTCCCCACACTGCTGGAAGATATGCTGTCAAGC GTTTCAGAAAGGCACAATGTCCAATTGTTGAACGATTGACTAACTCACTT ATGATGCACGGTAGAAACAATGGCAAGAAATTGTTGACTGTCCGTATTAT CCGACATGCTTTTGAAATCATGCATTTGCTTACTGGAGAGGTTAGTAGTT TTTTGGGTCAAATAATTAATTTAAAGCAAATTGGATACTCATTGTACTTC AAAAATGTTCCATCTGCCTACATTTTTGTATTGAATTGATCTCTGAAGAT GTTGCTTGTGTATTAATATTCATATCTTGGCTACTtggggctgttccatt aaaaaaccatacagtgggggggggtggacgaaccttttcaagtcaaaaaa aattattgaaaatatgtAGATACCGCTGGAAAATGAGAAGATTTGAACaa atacccttggaaaaatCCTTTTGAtgccttaaagtgagggtggacgaact aaaatcagtcttttaccccctggaaattttagaataacttttaaccccat ggaaaaatgaaaaaacaccccctggaaCTTTTTCTCGGaataccctctgg aaatgttcgtccaccccctgtatggatataaaatagaATGACCCTTGGCT ATCTAGATTAGGTTCTGAACGTTTTGCAATGATGTAAATTTTACACCTTG ACATTGTCATGGATGATGTTTGATCGATAGGACTGAGCAAAACTAATGCA TTAGCAGGTTATTTCACATAATTTCTTCTCGTTGTAAGATACAGTCAGGG CGTTGCTTCTTTTCACTATTGGACTGGGGTGTCAAAACTGACTGAAATCA AAATCCCATATTGAAGCCTTAATTATGCTTGGCAACATCCTAATTTTGTC ATGTATGTTGAGCTTTTATGGAAACAGCTCTCTTATTCAATCTTACATTC AAGCTAAGTCAACAGTAACAAAATGTTCTTTCTTTCAATCTCTGTTGCAT TTAACTCTTAGAAGGAATCccaaatttgattgaaattgaaaagacaAAAC TTTGTTTCCGCTGTTGTGTGTTTTGTTAATgtagtgtctataataatttc ATGACATAAATTTAAGCCCAGAATGTTTTGCTATGATgtaaattttttaa ccttgacgCTATCAATGGATGATGTTTGATCGATAGGACTGAGCAGAACC ACAAAATAaacagtgttttttttttttttttttttttttaatttNTGTTT TGCTatgatgtaatttttttaaccttgacGCTATCAATGGATGATGTTTG ATCGATAGGACTGAGCAGAACCACAAAATAAAcagtgttttttgttttgt tttgtttttttaatttaagaTGCAGTCAGGGCGTTGCTTCTTTTCACATT TTGAACTGGGGTGTCAAAACTGACTAAAATCTAAATTCCATATTGAAAAC TTTATAATGTTTGGCAACATCAATTTGTCAACACAGCTAATTTTTCATGG AGATAACTCTCTGTGTTCATACTTAAGTTTGAGGTGGTTTTGGGCAGGGT CATGGGATTGCCTTTGATACTTCTAATAGAATCGAAGACTTTATTAGATG ACCAACACTAATCACTGTAACATACAACCATTCTGTTCCACAACATGAAC AGTGGAATGGCCCCATGTTAGTTAAcaccttcaaaattttaaatgtgAAT AAGAGAATAGGGCTGTTTACTGTCTTTATTTCTCTAgcgaaattttgaaa agttttatacCTTCTGAAATAGAAATTCTACTCGggaaatacatgttttt tttataagcaagtatctgtccctatatcaggctcgcattatgcttagcat tctattgtttttaaacaatagccattgtttaggtaccaaaaactgagcct gcatatgcttataaacgttatgcttataaaaaagaaaacacgtAGGTCAC GGGATTGCCTTTGATACTTCTAATAGAATTGAAGACTTTATTAGATGACC AATACTAATCACACTAACATACAACCATTCTGTTCCACAACATGAACAGT GGGATGGCCCCATGTTGGTTCACAAATTGTGCAAAACTAACCGcaaattt tcaggatttatTCTTTCCCTTTTTTCTTAGAAAGTCATGGCGTTGCTTCT TTTTCCCTTGTGAAACTGGGGTGTCAAAACTGACTGACAACAAATGAATT TGCGTTTTTCTTCATAGCTTGGATTTTCATAATTTGATGCTATAAACAGG CAATTCCAATATTCTTTCAACTTAGATTATATTCATTCGTCCTGTTTCTA CAAGAGAACTTTTTCTTTAGTCCTACTCCTGTATTGCCAGGGCGTTGCTT ATTGTCTTATATAGACTCTGGGTGTCAAAACTGGCATAAATAAAATTTCA AAGAAAATGTTTTACATTTGCATTCTTCTATGTGCAATGCAAAAAAAGTG TTTCTTCGATACAACCTTGGCATGTCTCTAAGATTGAATGTCAAAGGCGA TTGATTTTGTTTAAACCATTTGACCATTCTGTTCCACAACATGAACAGTG GGATGGCCCCATGTTGGTTCACAAATTGTGCAAAACTAACTGCAAATTTT CAGGATTTATTCTTTCCCTTTTTTCTTAGAAAGTCATGGCGTTGCTTCTT TTTCCCTTGTGAAACTGGGGTGTCAAAACTGactgaaaacaaaggaattt gCGTTTTTCTTCATAGCTTGGATTTTCATAATTTGATGCTATAAACTGGC AATTCCAATATTCTTTCAACTTAGATTATATTCATTCGTCCTGTTTCTAC AAGAGAACTATTTCTTTAGTCCTACTCCTGTATTGCCAGGGCGTTGCTTA TTGTCTTATATAGACTCTGGGTGTCAAAACTGGcataaataaaatttcaa agaaaactgTTTACATTTGCATTCTTCTATGTGCAATGCAAAAAAGTGTT TCTTCGGTACAACCTTCACATGTCTCTAAGATTGAATGTCAATGGCGATT GATTTTGTTTAAACCATTTGACTatcgaatgtttacatttttagaACCCA CTCCAAGTATTGTGTGATGCTATTATCAACAGTGGACCTCGTGAGGATTC TACCCGTATTGGTCGTGCTGGTACTGTCCGTCGTCAAGCTGTTGATGTTG CTCCATTAAGACGTGTTAACCAAGCCATCTGGCTCTTGTGTACTGGTGCA CGTGAAGCATCTTTCAGAAACATCAAATCTATTGCTGAATGCTTGGCTGA TGAACTTATCAACGCTTCCAAGGTTAGGGTCAATACAAGATTCTGGCACT GAAGACCAATAAGCTCttccggaaaatttttgtccgggggtagtgagaaa tctgcaaaatttgccttgtttaaTAGGCAAACTGGCTCTGgttag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006724TCONS_00006724Clytia hemisphaericatranscript
TCONS_00006725TCONS_00006725Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006725-proteinTCONS_00006725-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:121246..130490 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
RPS540S ribosomal protein S5 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2837.52 2850.2 2883.48 2826.84 2128.86 1773.66 2364.86 2461.04 4842.46 4772.71 5016.89 5896.11 6791.84 6856.69 6094.03 6069.46 6249.67 6684.63 3477.57 3863.97 6176.16 6135.67 4290.1 4221.05 3254.38 3436.05 5710.02 5868 3648.45 3723.24