TCONS_00006722 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006722
Unique Name	TCONS_00006722
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1746

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000070:86716..93315+

transcript sequence

>TCONS_00006722 ID=TCONS_00006722|Name=TCONS_00006722|organism=Clytia hemisphaerica|type=transcript|length=1746bp
acaagatggctgtttctggctgaaaaacacggttttcaagggttataGAT
AGTTTCACTGTTTAATTCCATTAAAGGTCATCAACAATGCTTGTGCAACG
CAAGCTATCATTAGCATTCTACTCAACCTCTCGCATAAAGATGTTCAACT
TGGAGATAACCTAAGctctttcaaagaattttcaaaacaatttgatCCAG
CACTTAAAGGATTGAGTTTGTCGAATTCTGACGTTATCAAACAAGTCCAC
AACAGTTTCGCTAGACAACAAATGTTTGAATTTGACCAAACTGTACAAGA
TGAGGATAAAGATTCGTATCATTTTGTCGCTTATCTTCCCATCAATGGAC
GTATGTATGAGTTGGACGGTCTAAAAGAAGGTCCAATTGATCTGGGTGCG
TCAACATACGATAAATGGCTTGAAAATATAAAACCTATTATTGAAAGACG
AATGCAACGTTACTCTGCAGaagaaattcatttcaatttgatGGCTGTCG
TATCGGATCGCCAAGACCtatattcaaaacaaatcaacGAGCTTAAAACA
CAGAAAGATTCATTAATGCAATCGGGTATGGAAACTGaccaaatcaaaat
aatcgATGATGAGATTTCCAGATGTCATTCGATGTTGGaaagagaaaagg
aaaaattacaaAGATACAAGACTGAAAACGTCAGAAGAAAGCACAACTAT
CTACCCTTCATCATGGAGTTGTTAAGGATACTGGCTAAGAAGCAACAACT
CGTACCCCTTGTTGATAAGGCCAAAGAAGTCACAAAAACACGACGTGAAC
AAGATAAAGCAAGGAAACGAAAATTGGAAGAGAAAAAATAATCGAAGAGA
ACCTTGAAGAAACTTTGCAGGAAAGTTCTGCGTATGAATAAAAGGCGATT
AAACATTCTCCGTACGATTCGGCCCTgaatttgttatttattttgaaggC
GGCGAAGAATATCTCGTTCACATCATcttcataaaaaatttaatgacagT
TTAATGTTGATTTAATGACGTGACTTTAGTGAATATAAACTTTTTAATAG
AAGTTTTTCAGTTAGTTTCAGATAGTTTTTTCAACTTGGATTTTTTATTG
CATAAtgcattttaaaatgaaaacattatcATTGGGCGAGATGAAATCAC
TTTGGATTAGCATATGtttgactttgttttcatcctTCAACACTTTCAAA
GACCTCTCCATgttgggtcaagctggagtttttacaagctcttgttTGAT
TTAGTTGGTTTTGGATATAAcaattataaaataatataatgaaataaaaa
acgatttaataatttttttccgaaaacGCGTTATCTCCATTACATTAAAT
TAccaattaaagtctattcacgataagtgtgcactcttttttcttttacc
tataacttttgaaggNCAACTTGGATTTTTTATTACATAAtgcattttaa
aatgaaaacattatcATTGGGCGAGATGAAATCACTTTGGATTAGCATAT
GtttgactttgttttcatcctTCAACACTTTCAAAGACCTCTCCATgttg
ggtcaagctggagtttttacaagctcttgttTGATTTAGTTGGTTTTGGA
TATAAcaattataaaataatataatgaaataaaaaacgatttaataattt
ttttccgaaaacGCGTTATCTCCATTACATTAAATTAccaattaaagtct
attcacgataagtgtgcactcttttttcttttacctataacttttg

Run BLAST on NCBI

transcript from alignment at sc0000070:86716..93315+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006722 ID=TCONS_00006722|Name=TCONS_00006722|organism=Clytia hemisphaerica|type=transcript|length=6600bp|location=Sequence derived from alignment at sc0000070:86716..93315+ (Clytia hemisphaerica)
acaagatggctgtttctggctgaaaaacacggttttcaagggttataGAT
AGTTTCACTGTTTAATTCCATTAAAGGTCATCAACAATGCTTGTGCAACG
CAAGCTATCATTAGCATTCTACTCAACCTCTCGCATAAAGATGTTCAACT
TGGAGATAACCTAAGctctttcaaagaattttcaaaacaatttgatCCAG
CAGTAAGTATGTAGGtgtttgatgttgatttcagtTTTTTGCCGTTAAAC
AAGGAAAACTTTTTAACAAATCacgttttgagaaatttttggaaaatatc
ttTTGCTCAGCTTTATTCAATGttaatttttcacaatttttatttcaaat
ttcgattttagCACATGCGAAACAGGAATATTACTAGGACATGATAAGAA
TATGTATATGTCAGggaaagcttttttattttctttaattttcccTTTGA
CATAATTTAAACATCACCTCGATATATTTCAGCTTAAAGGATTGAGTTTG
TCGAATTCTGACGTTATCAAACAAGTCCACAACAGTTTCGCTAGGTATGT
GAAAAACACAATTGTTTTGAAGAACCTAACAGTTTAGTGTTGCGTCCACA
TTcagaaatataatatctacCATTCACAGTCAAAGTCAACCAATAAACCT
TTTGAAGCTCCTTAAACATCCAGGAATTTATGTTATTTTTTAGGAAGCGA
TATCCCTCACCCTTCCCAACCACCAACACTGCCAATCCAATTAAGAGCTC
ATTTCGACCCATCTTAGTTtcaatacagttgactctcgccaattcgaact
cgaacaggGGAAtgttatttgttcgaattacagagagattcgattTATAG
CAAGTATTTAAGAGGGTTTCTAGTTGACACGGGGACTGAGAAtatgttcg
aattacagaaagttcgaataagcgagagtctactgtagatttttcattct
tttttcgtttattttttttgtgCAGACAACAAATGTTTGAATTTGACCAA
ACTGTACAAGATGAGGATAAAGATTCGTATCATTTTGTCGCTTATCTTCC
CATCAATGGACGTATGTATGAGTTGGACGGTCTAAAAGAAGGTCCAATTG
ATCTGGGTATGTAGATGCTTCTTTTATGAAATTCTGTGAGGCAACTCCAG
TTGGTCTCATTTATAAGGTCACTTAAGAATTTTAtagaataaaatatttt
ataaaataaaatcaaattgaatTATCTACCAGCTGCGTCAAAAGTATGTT
TACAGGCTTGTCAAAAATATTGGGAGTTTAAAAACAGATAAGAATATTTT
GGTGattcctttttggacctacctccgggtggaggttctataaattaacc
catgtccgttcgttcgttcgtccgtccgtccgtctgttagtCAGCTTTTC
TCAgaatcggctcattagttttttctgattttttgcacaatgatgcaaaa
tggcaatgcccagaacgtgacggagcccgatttttgagaaaaaatttatt
tgggcaaatttgggccaaaaactacctaaaaatagggttttttggacttt
gcaaaatactgtcattacttttttctgattttttgtacaaagatggaggg
caagattctctaaagaatggctgaattagtttttcctggaaaattcttat
tcgccttaaaaacggattttcgtattttgggggaaattccctttaactaa
ataagaaaatatagcttttctcaatgttgactcgttatttttttctgatt
ttttgcacaatgatgcaaaatggtaatgcctaaaatgtgtcggagcccaa
ttttcgagaaaaaatatatttgggcaaatttggtcCAGTCATTACTTTTG
TCTGactttttgtacaaagatggagggcaagattctctacagaatggctg
aagtggtttttcctggaaaattcttattcgccttaaaagacggattttcg
tattttggggaaattccctttaaccaaataagaaaatatagCTTTTCTCA
ATGTTGACTCATAATTTTTTTCTCATTTTttacacaatgatgcaaaatga
caatgcccaaaatgtgacagagccagattttaaggaaaatttttttgggc
aaatttgggccaaaaacagcctaaaaggttttttgggcctgaatggttta
agtgattttcgtatttgggggaattcctttttaccattttacattattca
acacacaagctttatttttccattctgaatttttgtacaattattgtcac
ttttttcttatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtcaacacacaagctttatttttccattctgaatttttg
tacaattattttcacttttttcttattttcatctgatgttaatcattagg
taggtccattcagcacgttgcttgtttttttgttttttttacactAGACT
TAACTTAAGTTTTAGTGTATATAACTTTAAAATCGAAGGTCAATCAAATG
TTGTGTTGAATACCGAAAATTTTGACCTCAAAATTGTCGCAATTCATTAA
AAACAAAGCATTTCCTTGTTAGGTGGCGGAAGTTTGCGAAATGCATGGTT
GCATTATCAAGTTAAGATCTagttaaagggacattacagtagtaattaaa
gagaacaatgaaaatcacgtgtccaaaacaaacttgtaaaacaattgaac
aatcaaaattagccatatttggtttgattttttattttgacatgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNttgattttttattttgacatgt
gacatttgttttgattttgtatccgctgcatacagtttgtttacaaattt
cgcaagtactgttatgtccctttaagagaAACATTTTCCATTAATTTTTC
AGGTGCGTCAACATACGATAAATGGCTTGAAAATATAAAACCTATTATTG
AAAGACGAATGCAACGGTAAGATAAATACTCCAAATATTCCAAAGGTGTc
acccaaaattcaaaaaattcaaaagtcaaattcATGTGgattattttttc
tcttttaccttgattttaaaaattaagtGCTTGGGTTACGctttctttgg
aaaatttgaaaataatgggGCACTactaaaaagttattttctggTATGAA
AATTAGAATGTTGCAGTTAAAACCGAAGTGTAAGTCTTTTTCATGACCTT
TGATTTATTTCAGTTACTCTGCAGaagaaattcatttcaatttgatGGCT
GTCGTATCGGATCGCCAAGACCtatattcaaaacaaatcaacGAGCTTAA
AACACAGAAAGATTCATTAATGCAATCGGTATGAAACATTTcctttggag
tgcaattttaaacattgaatttcaagtggggatgaaatcaaagtcagttT
TAGATTGAATGAATTATTTTGAGACTTGAGAGTAACAGATGATGTTATTT
TTGACTGACTCCATAGATACCCAGCGAAAAAATACCTTTGTAAAAATTAC
GCGAACGAAGGGAGCAAGAAAacttttgggtatttttttctctttttggc
tgaaaactgcTAATTCTAAAGTGTAAAAGCAAAGGGGTGCCAAAATTAGT
AATGAGATACGCCTTTTTCCAACCCTTGTCTTTTAGCGCCCTCCACTGCC
CCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcgccattt
tgaaaaaaaaatgttaaaaatctaaataacaataaaactacttggagttg
aaaaatataatcaaaaatgagaaacaaacacgatgaatagatttgcaatc
ccttattctcaaataaaaacattgcttcatactgtttttaccttccaaaa
acaactaaaatctggcggactgttttacagtccgcNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaacaactaaa
atctggcggactgttttacagtccgcctaggcaaaagcatattacaatat
actaccgggccacttaatcgcgccatccagtctataaaaaagctttaagt
ggaccccgggctactcCCCTGTCACCACGCTACTGTGATGACCCTAGATA
ATattcaagttttgaaaatatttataggAGTTCTATTagatttgaaattc
ttttggtCTTGTGAGGCAATTGTGAGTTTGGCATTATGGATTTATGTGCA
ACTGTTCTTTTAAAGTgataccatgaacatataaaatactggacgtctat
cttcttTTGTGTCTTTGAAGTGAGCTTCGTTGCCTCCTGCATTTCaaact
tgtaataaaaaatCCTACTTTATTTCGTCATAATTTTGACGCtcaatttt
cgggaaaaaaaattttgagcccaaaaataggtttttttggactttgtgaa
aaatctgttcattagtttttcctaattttttgttcaaagatGTAAAATTA
CAGTGTGCTAATATGAAAAAGTtcctttttcgaaaaaaatttctacGGCc
taaaaatgcccaaaaatagggtcaatattttttattttgaccagttatgt
cttatgtttttcattgttttaatgttcagttttgataaccaggtaggtcc
ataaaagtatcacttgttcctTTTATAGGGTATGGAAACTGaccaaatca
aaataatcgATGATGAGATTTCCAGATGTCATTCGATGTTGGaaagagaa
aaggaaaaattacaaAGATACAAGGTATgcacacattttttataagcaac
agAGTTGCTAAGGGTCCAGCGCTGAGAATGGCCAGATTGAAGCATTGGTT
GAGAAATAATAAGCAAAGCTAAatttagtgcacacttatcgtgaatataC
TTTAGAAccaattataaaaaaagatgattattcttttaaaattaaaagGG
CGAAATAAGCCAAACGTAGAAGCTTCAAGAAAATAACTTACTATTTAAGG
CTATTGTGTTTAGTTTAAAGCCTTTCTTTTGTTACAGACTGAAAACGTCA
GAAGAAAGCACAACTATCTACCCTTCATCATGGAGTTGTTAAGGATACTG
GCTAAGAAGCAACAACTCGTACCCCTTGTTGATAAGGTgataattttcat
caaattttaaacattatttttccTACCAATACAGTCAAGTCAATgccatt
ttctatttttttcccttcaaaaatcattttgcaGGTTCGGTAAGATTgaa
tatcaaactttttttcttttgcagcgtgcataaaatttatcaaattattT
ACTTCCTTGTGTATTTATTCCAGGCCAAAGAAGTCACAAAAACACGACGT
GAACAAGATAAAGCAAGGAAACGAAAATTGGAAGAGAAAAAATAATCGAA
GAGAACCTTGAAGAAACTTTGCAGGAAAGTTCTGCGTATGAATAAAAGGC
GATTAAACATTCTCCGTACGATTCGGCCCTgaatttgttatttattttga
aggCGGCGAAGAATATCTCGTTCACATCATcttcataaaaaatttaatga
cagTTTAATGTTGATTTAATGACGTGACTTTAGTGAATATAAACTTTTTA
ATAGAAGTTTTTCAGTTAGTTTCAGATAGTTTTTTCAACTTGGATTTTTT
ATTGCATAAtgcattttaaaatgaaaacattatcATTGGGCGAGATGAAA
TCACTTTGGATTAGCATATGtttgactttgttttcatcctTCAACACTTT
CAAAGACCTCTCCATgttgggtcaagctggagtttttacaagctcttgtt
TGATTTAGTTGGTTTTGGATATAAcaattataaaataatataatgaaata
aaaaacgatttaataatttttttccgaaaacGCGTTATCTCCATTACATT
AAATTAccaattaaagtctattcacgataagtgtgcactcttttttcttt
tacctataacttttgaaggNCAACTTGGATTTTTTATTACATAAtgcatt
ttaaaatgaaaacattatcATTGGGCGAGATGAAATCACTTTGGATTAGC
ATATGtttgactttgttttcatcctTCAACACTTTCAAAGACCTCTCCAT
gttgggtcaagctggagtttttacaagctcttgttTGATTTAGTTGGTTT
TGGATATAAcaattataaaataatataatgaaataaaaaacgatttaata
atttttttccgaaaacGCGTTATCTCCATTACATTAAATTAccaattaaa
gtctattcacgataagtgtgcactcttttttcttttacctataacttttg

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003767	XLOC_003767	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000070	supercontig	sc0000070:86716..93315 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
85.1414	85.308	103.345	96.8126	46.6554	34.4831	33.0725	36.1121	35.1998	35.3444	28.6911	25.5495	19.4168	16.999	28.7607	34.6659	28.0645	29.8384	3.67498	8.57008	30.2407	26.3724	39.823	35.933	52.9391	52.7439	38.2726	27.2922	30.0536	27.421

Blast

[Close]

BLAST of TCONS_00006722 vs. Swiss-Prot (Human)
Match: UCHL5 (Ubiquitin carboxyl-terminal hydrolase isozyme L5 OS=Homo sapiens GN=UCHL5 PE=1 SV=3)

HSP 1 Score: 315.849 bits (808), Expect = 5.202e-102
Identity = 145/248 (58.47%), Postives = 196/248 (79.03%), Query Frame = 2

Query:   74 KVINNACATQAIISILLNLSHKDVQLGDNLSSFKEFSKQFDPALKGLSLSNSDVIKQVHNSFARQQMFEFDQTVQDEDKDSYHFVAYLPINGRMYELDGLKEGPIDLGASTYDKWLENIKPIIERRMQRYSAEEIHFNLMAVVSDRQDLYSKQINELKTQKDSLMQSGMETDQ----IKIIDDEISRCHSMLEREKEKLQRYKTENVRRKHNYLPFIMELLRILAKKQQLVPLVDKAKEVTKTRREQD 805
            +VINNACATQAI+S+LLN +H+DV LG+ LS FKEFS+ FD A+KGL+LSNSDVI+QVHNSFARQQMFEFD     +++D++HFV+Y+P+NGR+YELDGL+EGPIDLGA   D W+  ++P+IE+R+Q+YS  EI FNLMA+VSDR+ +Y ++I EL  Q+    +  M+TDQ    +  I  E+++   ++E E +KL+RYK EN+RRKHNYLPFIMELL+ LA+ QQL+PLV+KAKE    ++ Q+
Sbjct:   82 QVINNACATQAIVSVLLNCTHQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNSFARQQMFEFDTKTSAKEEDAFHFVSYVPVNGRLYELDGLREGPIDLGACNQDDWISAVRPVIEKRIQKYSEGEIRFNLMAIVSDRKMIYEQKIAEL--QRQLAEEEPMDTDQGNSMLSAIQSEVAKNQMLIEEEVQKLKRYKIENIRRKHNYLPFIMELLKTLAEHQQLIPLVEKAKEKQNAKKAQE 327

The following BLAST results are available for this feature:

BLAST of TCONS_00006722 vs. Swiss-Prot (Human)

BLAST of TCONS_00006722 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UCHL5	5.202e-102	58.47	Ubiquitin carboxyl-terminal hydrolase isozyme L5 O...	[more]

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TCONS_00006722 (transcript) - C. hemisphaerica