XLOC_003767 (gene) - C. hemisphaerica

Overview
NameXLOC_003767
Unique NameXLOC_003767
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000070:86678..94635+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003767 ID=XLOC_003767|Name=XLOC_003767|organism=Clytia hemisphaerica|type=gene|length=7958bp|location=Sequence derived from alignment at sc0000070:86678..94635+ (Clytia hemisphaerica)
aactcgagatattgagcttcaaaaagcgcaaaaactggacaagatggctg
tttctggctgaaaaacacggttttcaagggttataGATAGTTTCACTGTT
TAATTCCATTAAAGGTCATCAACAATGCTTGTGCAACGCAAGCTATCATT
AGCATTCTACTCAACCTCTCGCATAAAGATGTTCAACTTGGAGATAACCT
AAGctctttcaaagaattttcaaaacaatttgatCCAGCAGTAAGTATGT
AGGtgtttgatgttgatttcagtTTTTTGCCGTTAAACAAGGAAAACTTT
TTAACAAATCacgttttgagaaatttttggaaaatatcttTTGCTCAGCT
TTATTCAATGttaatttttcacaatttttatttcaaatttcgattttagC
ACATGCGAAACAGGAATATTACTAGGACATGATAAGAATATGTATATGTC
AGggaaagcttttttattttctttaattttcccTTTGACATAATTTAAAC
ATCACCTCGATATATTTCAGCTTAAAGGATTGAGTTTGTCGAATTCTGAC
GTTATCAAACAAGTCCACAACAGTTTCGCTAGGTATGTGAAAAACACAAT
TGTTTTGAAGAACCTAACAGTTTAGTGTTGCGTCCACATTcagaaatata
atatctacCATTCACAGTCAAAGTCAACCAATAAACCTTTTGAAGCTCCT
TAAACATCCAGGAATTTATGTTATTTTTTAGGAAGCGATATCCCTCACCC
TTCCCAACCACCAACACTGCCAATCCAATTAAGAGCTCATTTCGACCCAT
CTTAGTTtcaatacagttgactctcgccaattcgaactcgaacaggGGAA
tgttatttgttcgaattacagagagattcgattTATAGCAAGTATTTAAG
AGGGTTTCTAGTTGACACGGGGACTGAGAAtatgttcgaattacagaaag
ttcgaataagcgagagtctactgtagatttttcattcttttttcgtttat
tttttttgtgCAGACAACAAATGTTTGAATTTGACCAAACTGTACAAGAT
GAGGATAAAGATTCGTATCATTTTGTCGCTTATCTTCCCATCAATGGACG
TATGTATGAGTTGGACGGTCTAAAAGAAGGTCCAATTGATCTGGGTATGT
AGATGCTTCTTTTATGAAATTCTGTGAGGCAACTCCAGTTGGTCTCATTT
ATAAGGTCACTTAAGAATTTTAtagaataaaatattttataaaataaaat
caaattgaatTATCTACCAGCTGCGTCAAAAGTATGTTTACAGGCTTGTC
AAAAATATTGGGAGTTTAAAAACAGATAAGAATATTTTGGTGattccttt
ttggacctacctccgggtggaggttctataaattaacccatgtccgttcg
ttcgttcgtccgtccgtccgtctgttagtCAGCTTTTCTCAgaatcggct
cattagttttttctgattttttgcacaatgatgcaaaatggcaatgccca
gaacgtgacggagcccgatttttgagaaaaaatttatttgggcaaatttg
ggccaaaaactacctaaaaatagggttttttggactttgcaaaatactgt
cattacttttttctgattttttgtacaaagatggagggcaagattctcta
aagaatggctgaattagtttttcctggaaaattcttattcgccttaaaaa
cggattttcgtattttgggggaaattccctttaactaaataagaaaatat
agcttttctcaatgttgactcgttatttttttctgattttttgcacaatg
atgcaaaatggtaatgcctaaaatgtgtcggagcccaattttcgagaaaa
aatatatttgggcaaatttggtcCAGTCATTACTTTTGTCTGactttttg
tacaaagatggagggcaagattctctacagaatggctgaagtggtttttc
ctggaaaattcttattcgccttaaaagacggattttcgtattttggggaa
attccctttaaccaaataagaaaatatagCTTTTCTCAATGTTGACTCAT
AATTTTTTTCTCATTTTttacacaatgatgcaaaatgacaatgcccaaaa
tgtgacagagccagattttaaggaaaatttttttgggcaaatttgggcca
aaaacagcctaaaaggttttttgggcctgaatggtttaagtgattttcgt
atttgggggaattcctttttaccattttacattattcaacacacaagctt
tatttttccattctgaatttttgtacaattattgtcacttttttcttatN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
tcaacacacaagctttatttttccattctgaatttttgtacaattatttt
cacttttttcttattttcatctgatgttaatcattaggtaggtccattca
gcacgttgcttgtttttttgttttttttacactAGACTTAACTTAAGTTT
TAGTGTATATAACTTTAAAATCGAAGGTCAATCAAATGTTGTGTTGAATA
CCGAAAATTTTGACCTCAAAATTGTCGCAATTCATTAAAAACAAAGCATT
TCCTTGTTAGGTGGCGGAAGTTTGCGAAATGCATGGTTGCATTATCAAGT
TAAGATCTagttaaagggacattacagtagtaattaaagagaacaatgaa
aatcacgtgtccaaaacaaacttgtaaaacaattgaacaatcaaaattag
ccatatttggtttgattttttattttgacatgNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNttgattttttattttgacatgtgacatttgtttt
gattttgtatccgctgcatacagtttgtttacaaatttcgcaagtactgt
tatgtccctttaagagaAACATTTTCCATTAATTTTTCAGGTGCGTCAAC
ATACGATAAATGGCTTGAAAATATAAAACCTATTATTGAAAGACGAATGC
AACGGTAAGATAAATACTCCAAATATTCCAAAGGTGTcacccaaaattca
aaaaattcaaaagtcaaattcATGTGgattattttttctcttttaccttg
attttaaaaattaagtGCTTGGGTTACGctttctttggaaaatttgaaaa
taatgggGCACTactaaaaagttattttctggTATGAAAATTAGAATGTT
GCAGTTAAAACCGAAGTGTAAGTCTTTTTCATGACCTTTGATTTATTTCA
GTTACTCTGCAGaagaaattcatttcaatttgatGGCTGTCGTATCGGAT
CGCCAAGACCtatattcaaaacaaatcaacGAGCTTAAAACACAGAAAGA
TTCATTAATGCAATCGGTATGAAACATTTcctttggagtgcaattttaaa
cattgaatttcaagtggggatgaaatcaaagtcagttTTAGATTGAATGA
ATTATTTTGAGACTTGAGAGTAACAGATGATGTTATTTTTGACTGACTCC
ATAGATACCCAGCGAAAAAATACCTTTGTAAAAATTACGCGAACGAAGGG
AGCAAGAAAacttttgggtatttttttctctttttggctgaaaactgcTA
ATTCTAAAGTGTAAAAGCAAAGGGGTGCCAAAATTAGTAATGAGATACGC
CTTTTTCCAACCCTTGTCTTTTAGCGCCCTCCACTGCCCCCCCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNgtcgccattttgaaaaaaaaat
gttaaaaatctaaataacaataaaactacttggagttgaaaaatataatc
aaaaatgagaaacaaacacgatgaatagatttgcaatcccttattctcaa
ataaaaacattgcttcatactgtttttaccttccaaaaacaactaaaatc
tggcggactgttttacagtccgcNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaaaacaactaaaatctggcggact
gttttacagtccgcctaggcaaaagcatattacaatatactaccgggcca
cttaatcgcgccatccagtctataaaaaagctttaagtggaccccgggct
actcCCCTGTCACCACGCTACTGTGATGACCCTAGATAATattcaagttt
tgaaaatatttataggAGTTCTATTagatttgaaattcttttggtCTTGT
GAGGCAATTGTGAGTTTGGCATTATGGATTTATGTGCAACTGTTCTTTTA
AAGTgataccatgaacatataaaatactggacgtctatcttcttTTGTGT
CTTTGAAGTGAGCTTCGTTGCCTCCTGCATTTCaaacttgtaataaaaaa
tCCTACTTTATTTCGTCATAATTTTGACGCtcaattttcgggaaaaaaaa
ttttgagcccaaaaataggtttttttggactttgtgaaaaatctgttcat
tagtttttcctaattttttgttcaaagatGTAAAATTACAGTGTGCTAAT
ATGAAAAAGTtcctttttcgaaaaaaatttctacGGCctaaaaatgccca
aaaatagggtcaatattttttattttgaccagttatgtcttatgtttttc
attgttttaatgttcagttttgataaccaggtaggtccataaaagtatca
cttgttcctTTTATAGGGTATGGAAACTGaccaaatcaaaataatcgATG
ATGAGATTTCCAGATGTCATTCGATGTTGGaaagagaaaaggaaaaatta
caaAGATACAAGGTATgcacacattttttataagcaacagAGTTGCTAAG
GGTCCAGCGCTGAGAATGGCCAGATTGAAGCATTGGTTGAGAAATAATAA
GCAAAGCTAAatttagtgcacacttatcgtgaatataCTTTAGAAccaat
tataaaaaaagatgattattcttttaaaattaaaagGGCGAAATAAGCCA
AACGTAGAAGCTTCAAGAAAATAACTTACTATTTAAGGCTATTGTGTTTA
GTTTAAAGCCTTTCTTTTGTTACAGACTGAAAACGTCAGAAGAAAGCACA
ACTATCTACCCTTCATCATGGAGTTGTTAAGGATACTGGCTAAGAAGCAA
CAACTCGTACCCCTTGTTGATAAGGTgataattttcatcaaattttaaac
attatttttccTACCAATACAGTCAAGTCAATgccattttctattttttt
cccttcaaaaatcattttgcaGGTTCGGTAAGATTgaatatcaaactttt
tttcttttgcagcgtgcataaaatttatcaaattattTACTTCCTTGTGT
ATTTATTCCAGGCCAAAGAAGTCACAAAAACACGACGTGAACAAGATAAA
GCAAGGAAACGAAAATTGGAAGAGAAAAAATAATCGAAGAGAACCTTGAA
GAAACTTTGCAGGAAAGTTCTGCGTATGAATAAAAGGCGATTAAACATTC
TCCGTACGATTCGGCCCTgaatttgttatttattttgaaggCGGCGAAGA
ATATCTCGTTCACATCATcttcataaaaaatttaatgacagTTTAATGTT
GATTTAATGACGTGACTTTAGTGAATATAAACTTTTTAATAGAAGTTTTT
CAGTTAGTTTCAGATAGTTTTTTCAACTTGGATTTTTTATTGCATAAtgc
attttaaaatgaaaacattatcATTGGGCGAGATGAAATCACTTTGGATT
AGCATATGtttgactttgttttcatcctTCAACACTTTCAAAGACCTCTC
CATgttgggtcaagctggagtttttacaagctcttgttTGATTTAGTTGG
TTTTGGATATAAcaattataaaataatataatgaaataaaaaacgattta
ataatttttttccgaaaacGCGTTATCTCCATTACATTAAATTAccaatt
aaagtctattcacgataagtgtgcactcttttttcttttacctataactt
ttgaaggNCAACTTGGATTTTTTATTACATAAtgcattttaaaatgaaaa
cattatcATTGGGCGAGATGAAATCACTTTGGATTAGCATATGtttgact
ttgttttcatcctTCAACACTTTCAAAGACCTCTCCATgttgggtcaagc
tggagtttttacaagctcttgttTGATTTAGTTGGTTTTGGATATAAcaa
ttataaaataatataatgaaataaaaaacgatttaataatttttttccga
aaacGCGTTATCTCCATTACATTAAATTAccaattaaagtctattcacga
taagtgtgcactcttttttcttttacctataacttttgaaggaattcttc
aatctttataaatttggtatcaatgGAAAGGTATTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtaatatctttccaatgataccaaatttataaagattgaagaat
tccttcaaaagttatcggtaaatgaaaaaagagtgcacacttatcgtgaa
tagactttagtgaAGTATCGTAAATTTAAAATGTTTGATCAAATTAAGTG
TTGCTAATTCTACCCCAGATCATCGTCCAATTCCATTATACTAACTCAAC
AATTGGTTTCATTAGATCAACTCTTGAAAAACTCAATTGTCATTCataaa
tactactgtatgttaTAGTATCTACTGATGGATCTTTCAGTTTTCCATAA
AGACATCCCCGATCAAGAGTTTGGAAACTtcttctttgatatttttatgt
ttagcaACAATAGGTCTTAAAAGTTCTACCATCTGTTTAGCAAAATCAAT
AGCAAATTGTGTGAAATCTGCTACATTGAATTGAACCTTAAACTGATATC
CACACAAGCTGTCTTCATCGCAAAACGTACACATcaaatcattttcaatc
ttGAATGTATAATTACCAGAACTTATAGACTGGCATAGTCTTttcagtat
gtttttattcggGAAAGTATCAATACCTTCTAGCTTACTTAAAGGGTACG
CCATAGCTTCCACTTTAGTATTAAAAGTTTGTAACAGTACAAACATCTCT
TCTACACCAGCTTCACTTTTAAATTTATCAAAGGCTTCGGTAACCAAAGA
ATCTTTCCCCTCCATTTTCTTCACCAGCTCTTGTTCATTTTGAATCGCTT
CGAAAACGCGTTTTAACGCTTCTTGTGGTGCAACAAAAACAGTAAACCAG
TAACCAGGTAATATATGATGGCTCCCTAACGGTGTGCCAGCTACTTTACC
GTTATTTATCGTCATCTTACGATAAACAGAATCGTTCACTAAATCGTATA
TCGTGTGCGACATAACGTAAGCGTCATTAACACGACTGACAAAATTCGTC
AAACATTCTTCCGTATTTATAATCGAATGTCCACCCGTTTTTAACATCTT
TTTGTTTCCCAGATAATCTTacaagttgattttttttcaagtaaatcgAC
TCtatatttgaaaatgatgaataaTATTATAGAGCGCGAGAGTTTTTTTC
TCCCCATA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006721TCONS_00006721Clytia hemisphaericatranscript
TCONS_00006722TCONS_00006722Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000070supercontigsc0000070:86678..94635 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
90.4	91.7	109.31	102.5	50.68	37.8	57.42	61.82	51.5	49.81	37.49	34.78	22.44	19.29	31.36	37.48	32.75	34.21	7.3	12.99	36.31	32.36	43.85	40.39	61.12	59.86	44.44	31.62	31.52	29