Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006719 ID=TCONS_00006719|Name=TCONS_00006719|organism=Clytia hemisphaerica|type=transcript|length=2411bpRun BLAST on NCBI protein sequence of TCONS_00006719-protein >TCONS_00006719-protein ID=TCONS_00006719-protein|Name=TCONS_00006719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp QATTYSAEDEYENGFLLFMKMITLLVEKLPKHPTYKNLSVDQRKESKQRCRun BLAST on NCBI transcript from alignment at sc0000070:35871..44454+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006719 ID=TCONS_00006719|Name=TCONS_00006719|organism=Clytia hemisphaerica|type=transcript|length=8584bp|location=Sequence derived from alignment at sc0000070:35871..44454+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000070:35871..44454+ >TCONS_00006719 ID=TCONS_00006719|Name=TCONS_00006719|organism=Clytia hemisphaerica|type=CDS|length=12258bp|location=Sequence derived from alignment at sc0000070:35871..44454+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006719 vs. Swiss-Prot (Human)
Match: STABP (STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 3.541e-64 Identity = 118/216 (54.63%), Postives = 150/216 (69.44%), Query Frame = 3 Query: 732 VTLSSLDPQQSFT-------PTVNRDSKPTDIISRQISDSLDGNRQVVIPADLVPRFLQAASANTSRNLETCGILNGSLSRNVLRVTHLVIPKQTATSDSXXXXXXXXLFEVQDKYDTITLGWIHTHPTQTAFLSSVDLHTQCSYQQLMPEAIAIVCAPKYQTTGIFRLTPAHGLKFVTNCTQSGFHPHPKNPPLFEDSPLVRTDDVTRIQIVDLR 1358 +T+SS+ P T P V+R KP + + + ++DG R VV+P L P+FLQ ASANT+R +ETCGIL G L RN +TH++IPKQ+A SD C TE EEELF +QD+ ITLGWIHTHPTQTAFLSSVDLHT CSYQ ++PE++AIVC+PK+Q TG F+LT HGL+ +++C Q GFHPH K+PPLF V D + I DLR Sbjct: 211 LTVSSIQPSDCHTTVRPAKPPVVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTD-HGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVVD-RAVTITDLR 424 The following BLAST results are available for this feature:
BLAST of TCONS_00006719 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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