TCONS_00006719-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006719-protein
Unique NameTCONS_00006719-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006719-protein ID=TCONS_00006719-protein|Name=TCONS_00006719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=453bp
QATTYSAEDEYENGFLLFMKMITLLVEKLPKHPTYKNLSVDQRKESKQRC
KKAFTEAEKLKTHVKKKYEAEYKLWKNAEEQRIKNEQEEEARKAKEAQKA
LDGLSIKNTASPSLPSSSIPPPITTIAQPTPPLGSTTPDNEISPPSYPSV
PSITPNSQIPQSPQSPLTGQPFSPVPTDHADAYQPTSPNNQFPPPSHVPY
HGLPPQYQSSVQPSAPPNYQDITANQHITPTPSMPHFDRSAKPVTLSSLD
PQQSFTPTVNRDSKPTDIISRQISDSLDGNRQVVIPADLVPRFLQAASAN
TSRNLETCGILNGSLSRNVLRVTHLVIPKQTATSDSCTTECEEELFEVQD
KYDTITLGWIHTHPTQTAFLSSVDLHTQCSYQQLMPEAIAIVCAPKYQTT
GIFRLTPAHGLKFVTNCTQSGFHPHPKNPPLFEDSPLVRTDDVTRIQIVD
LRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003765XLOC_003765Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006719TCONS_00006719Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000555JAMM/MPN+_dom
IPR015063USP8_dimer
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..104
NoneNo IPR availableGENE3D3.40.140.10coord: 280..415
e-value: 1.5E-35
score: 121.3
NoneNo IPR availableGENE3D1.20.58.280coord: 1..70
e-value: 7.1E-6
score: 25.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..227
NoneNo IPR availableCDDcd08066MPN_AMSH_likecoord: 281..452
e-value: 1.16974E-109
score: 323.008
NoneNo IPR availableSUPERFAMILY140856USP8 N-terminal domain-likecoord: 2..86
NoneNo IPR availableSUPERFAMILY102712JAB1/MPN domaincoord: 282..406
IPR000555JAB1/MPN/MOV34 metalloenzyme domainSMARTSM00232pad1_6coord: 282..408
e-value: 1.2E-11
score: 54.6
IPR000555JAB1/MPN/MOV34 metalloenzyme domainPFAMPF01398JABcoord: 280..386
e-value: 2.5E-17
score: 62.8
IPR015063USP8 dimerisation domainPFAMPF08969USP8_dimercoord: 1..70
e-value: 1.0E-9
score: 38.5

Blast
[Close]
BLAST of TCONS_00006719-protein vs. Swiss-Prot (Human)
Match: STABP (STAM-binding protein OS=Homo sapiens GN=STAMBP PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.040e-74
Identity = 118/216 (54.63%), Postives = 150/216 (69.44%), Query Frame = 0 
Query:  244 VTLSSLDPQQSFT-------PTVNRDSKPTDIISRQISDSLDGNRQVVIPADLVPRFLQAASANTSRNLETCGILNGSLSRNVLRVTHLVIPKQTATSDSCTTECEEELFEVQDKYDTITLGWIHTHPTQTAFLSSVDLHTQCSYQQLMPEAIAIVCAPKYQTTGIFRLTPAHGLKFVTNCTQSGFHPHPKNPPLFEDSPLVRTDDVTRIQIVDLR 452
            +T+SS+ P    T       P V+R  KP  + + +   ++DG R VV+P  L P+FLQ ASANT+R +ETCGIL G L RN   +TH++IPKQ+A SD C TE EEELF +QD+   ITLGWIHTHPTQTAFLSSVDLHT CSYQ ++PE++AIVC+PK+Q TG F+LT  HGL+ +++C Q GFHPH K+PPLF     V   D   + I DLR
Sbjct:  211 LTVSSIQPSDCHTTVRPAKPPVVDRSLKPGALSNSESIPTIDGLRHVVVPGRLCPQFLQLASANTARGVETCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFLIQDQQGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKFQETGFFKLTD-HGLEEISSCRQKGFHPHSKDPPLFCSCSHVTVVD-RAVTITDLR 424
The following BLAST results are available for this feature:
BLAST of TCONS_00006719-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STABP2.040e-7454.63STAM-binding protein OS=Homo sapiens GN=STAMBP PE=... [more]
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