TCONS_00006472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006472
Unique NameTCONS_00006472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006472 ID=TCONS_00006472|Name=TCONS_00006472|organism=Clytia hemisphaerica|type=transcript|length=2252bp
atttgattgattgattgattgattgattgattgattgattgattgattga
ttgattgattttgatTATATATTGATTGTCACTTTTTCCATTCCAGTTAA
AAAGAGAATAAATAAAACAAGAACAATagagaaaatgacgtcatcattct
taCAAGATTTGAAGGATGAAATATACCACCATATGCCAACTTTCAATCCA
AGTGGGAGTTACGTCACTCTGGGAATCGGTGCCGGTATTTTGGTCTGCTG
TCGTTTTTACCTCTCATCAAGATATGCTCGTTGcaaaaacaaagaacttt
taaaCGGTAAAACATGTGTTATCACTGGTTCTACGTCCGGTATTGGACAA
GCTGTTGCTAAGGACCTGGCATGCCGAAATGGCAATATTATCATAGCGTG
TCGTGATGTTCAAAAGGGGAGTAAAACTGCATTAATGATTCGAAATTCGG
TACCACACCCGGTCAACGTTTCCGTCTACCATCTTGACTTAGCCTCGATG
GACTCCATCCGACAATTCGCTTTCGAGTTGAACAAGAACAGTGTTGACAT
TGACATCTTGGTGAACAATGCTGGACTATTTGGTGCACCCTTCACACTAA
GTCAAGATGGCTACGAATTACATTTTGCCGTCAATCACTTANTGCACCCT
TCACACTAAGTCAAGATGGCTACGAATTGCATTTTGCTGTCAATCACTTG
GGAAGTTTTCTTCTGACACATTTATTGTTACCGAGAATGAAAAACAAACC
AGATGCGAGAATCGTTATGGTGTCGTCAGCGCTCTACAAGAGAAGCTTGT
CTGCTGACTTTCAACATTTTAACGATGAGAAAAACTTCACCTCATTCAAT
GCGTATTCGCTTAGTAAACTGGCAAATATCATGTTCACTTTGGAGCTCAG
TAAAAGGCTACCCAAagGAATCACCATCAACGCAATGCATCCTGGAATAG
TATTTACCGATTTAGCGCGCTATCGAATCGGTGGTAAtgttttcttaaga
tatcttTATAACATATTTGGCACCTTATTTTTGCGTTCTTCAGAGGTTGG
CGCGCAGACGATTATTCATATGGTTACCGAACCTTCTTTGAAAGGAGTGA
GTGGAAAATATTTTGGCGAATGTCGAGTGGAAGAGTTGAAAGAAAATGCG
AAAGATGAACGAGTTGCCGAAAAATTGTTCGAACTCTCTGAACAACTGTG
TGGAGTGAATTTTAAGACTGTCCTCTAAATGCGTGTATTTTACTCGATAA
ATGCTCATGGATccatcattgaaattttgattgacTAGTCAACATGCTCC
TGAATGTACCATTttcattttacatatttttggTTGGAAATCACCGTTTG
AATACCGTTTTTTGTGGAATATAACCATTCAGATACATTCAGATATTTCC
TGATGACATTATCATGGGAATTTGGTATCATCATGAGGGTCGATGCTTTG
ATAAACGAACAATACTGCACAAACAATGCGGATACAGATGAACTGTTTAA
aagtataaaaatgaagaattcgATAAATGGATAACAATAACATACACGAT
AGAGAATAATGTAATTCAGAACAACTTTTCTTCCCATGATCTTTAGTAAT
CTTATAGCCACTTAAATTTTCTGTTAACACCCTTTAAAGAATAACTTATG
ACACGAATCCCGTCTTTTACACCCAAAGAAAGTACTGATTGAATTATATA
GTTATTTTTTATAACCTTTATCCTCGACGAGATGCTTTAATACCGGAAGC
CCAACGAAAAAGTATAAGATTGATGGTCCGTAATAATTTAATGAAATGAT
GTGAATTTTTACaacatcaaaattttaacaaaatgaaTGACCAATttgtt
aaggccggtctccactttcgcgcgacatgagcgaaaactttttgacgttg
tTGTAAgctcattggtcggttgaaaaatgaagcaattccattggtcgaaa
ttgacgtaacggatgaaaaaagtagaacttccttcaacttttttttcatt
cgCGCGAAATtcttttatgacgtaatcttttcttcaggcaaaaaaggtta
agaaaaaaactgtcgcccatttcgcgcgaaatgggagaccggcctttaaa
agcaaaaaaagtataaaattttcaaaaaatttataaaaccaatttttaat
tttgccttttttctttacaatgaaaaagaaccttttttgtgaaaattatt
CGCATTATTAAGTTGGCAATCAAATCCCTTATAATTTTTCACTGTTCACC
CG
Run BLAST on NCBI

protein sequence of TCONS_00006472-protein

>TCONS_00006472-protein ID=TCONS_00006472-protein|Name=TCONS_00006472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MTSSFLQDLKDEIYHHMPTFNPSGSYVTLGIGAGILVCCRFYLSSRYARC
KNKELLNGKTCVITGSTSGIGQAVAKDLACRNGNIIIACRDVQKGSKTAL
MIRNSVPHPVNVSVYHLDLASMDSIRQFAFELNKNSVDIDILVNNAGLFG
APFTLSQDGYELHFAVNHLXHPSH
Run BLAST on NCBI

transcript from alignment at sc0000067:58235..60702-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006472 ID=TCONS_00006472|Name=TCONS_00006472|organism=Clytia hemisphaerica|type=transcript|length=2468bp|location=Sequence derived from alignment at sc0000067:58235..60702- (Clytia hemisphaerica)
ATTTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGA
TTGATTGATTTTGATTATATATTGATTGTCACTTTTTCCATTCCAGTTAA
AAAGAGAATAAATAAAACAAGAACAATAGAGAAAATGACGTCATCATTCT
TACAAGATTTGAAGGATGAAATATACCACCATATGCCAACTTTCAATCCA
AGTGGGAGTTACGTCACTCTGGGAATCGGTGCCGGTATTTTGGTCTGCTG
TCGTTTTTACCTCTCATCAAGATATGCTCGTTGCAAAAACAAAGAACTTT
TAAACGGTAAAACATGTGTTATCACTGGTTCTACGTCCGGTATTGGACAA
GCTGTTGCTAAGGACCTGGCATGCCGAAATGGCAATATTATCATAGCGTG
TCGTGATGTTCAAAAGGGGAGTAAAACTGCATTAATGATTCGAAATTCGG
TACCACACCCGGTCAACGTTTCCGTCTACCATCTTGACTTAGCCTCGATG
GACTCCATCCGACAATTCGCTTTCGAGTTGAACAAGAACAGTGTTGACAT
TGACATCTTGGTGAACAATGCTGGACTATTTGGTGCACCCTTCACACTAA
GTCAAGATGGCTACGAATTACATTTTGCCGTCAATCACTTANTGCACCCT
TCACACTAAGTCAAGATGGCTACGAATTGCATTTTGCTGTCAATCACTTG
GGAAGTTTTCTTCTGACACATTTATTGTTACCGAGAATGAAAAACAAACC
AGATGCGAGAATCGTTATGGTGTCGTCAGCGCTCTACAAGAGAAGCTTGT
CTGCTGACTTTCAACATTTTAACGATGAGAAAAACTTCACCTCATTCAAT
GCGTATTCGCTTAGTAAACTGGCAAATATCATGTTCACTTTGGAGCTCAG
TAAAAGGCTACCCAAAGGTAAAGTTTTTTTCTTATTTAATGAAATTTTTG
TGGCATTTTTTGTACAGAAACGTGGCATCAAAGATTAAGCATCCCCCAGA
CCCCCTTCTCCTCTAAAAAAGGGGAACTTTGCCGATTTCTTTGCTACACC
TTATACAATTCAACCACCAACCCTGTGTGAAATCTTTATTTAAAATTTCG
TAACATCAATTAACATCTTATTATTCTTTATAGGAATCACCATCAACGCA
ATGCATCCTGGAATAGTATTTACCGATTTAGCGCGCTATCGAATCGGTGG
TAATGTTTTCTTAAGATATCTTTATAACATATTTGGCACCTTATTTTTGC
GTTCTTCAGAGGTTGGCGCGCAGACGATTATTCATATGGTTACCGAACCT
TCTTTGAAAGGAGTGAGTGGAAAATATTTTGGCGAATGTCGAGTGGAAGA
GTTGAAAGAAAATGCGAAAGATGAACGAGTTGCCGAAAAATTGTTCGAAC
TCTCTGAACAACTGTGTGGAGTGAATTTTAAGACTGTCCTCTAAATGCGT
GTATTTTACTCGATAAATGCTCATGGATCCATCATTGAAATTTTGATTGA
CTAGTCAACATGCTCCTGAATGTACCATTTTCATTTTACATATTTTTGGT
TGGAAATCACCGTTTGAATACCGTTTTTTGTGGAATATAACCATTCAGAT
ACATTCAGATATTTCCTGATGACATTATCATGGGAATTTGGTATCATCAT
GAGGGTCGATGCTTTGATAAACGAACAATACTGCACAAACAATGCGGATA
CAGATGAACTGTTTAAAAGTATAAAAATGAAGAATTCGATAAATGGATAA
CAATAACATACACGATAGAGAATAATGTAATTCAGAACAACTTTTCTTCC
CATGATCTTTAGTAATCTTATAGCCACTTAAATTTTCTGTTAACACCCTT
TAAAGAATAACTTATGACACGAATCCCGTCTTTTACACCCAAAGAAAGTA
CTGATTGAATTATATAGTTATTTTTTATAACCTTTATCCTCGACGAGATG
CTTTAATACCGGAAGCCCAACGAAAAAGTATAAGATTGATGGTCCGTAAT
AATTTAATGAAATGATGTGAATTTTTACAACATCAAAATTTTAACAAAAT
GAATGACCAATTTGTTAAGGCCGGTCTCCACTTTCGCGCGACATGAGCGA
AAACTTTTTGACGTTGTTGTAAGCTCATTGGTCGGTTGAAAAATGAAGCA
ATTCCATTGGTCGAAATTGACGTAACGGATGAAAAAAGTAGAACTTCCTT
CAACTTTTTTTTCATTCGCGCGAAATTCTTTTATGACGTAATCTTTTCTT
CAGGCAAAAAAGGTTAAGAAAAAAACTGTCGCCCATTTCGCGCGAAATGG
GAGACCGGCCTTTAAAAGCAAAAAAAGTATAAAATTTTCAAAAAATTTAT
AAAACCAATTTTTAATTTTGCCTTTTTTCTTTACAATGAAAAAGAACCTT
TTTTGTGAAAATTATTCGCATTATTAAGTTGGCAATCAAATCCCTTATAA
TTTTTCACTGTTCACCCG

Coding sequence (CDS) from alignment at sc0000067:58235..60702-

>TCONS_00006472 ID=TCONS_00006472|Name=TCONS_00006472|organism=Clytia hemisphaerica|type=CDS|length=525bp|location=Sequence derived from alignment at sc0000067:58235..60702- (Clytia hemisphaerica)
ATGACGTCATCATTCTTACAAGATTTGAAGGATGAAATATACCACCATAT
GCCAACTTTCAATCCAAGTGGGAGTTACGTCACTCTGGGAATCGGTGCCG
GTATTTTGGTCTGCTGTCGTTTTTACCTCTCATCAAGATATGCTCGTTGC
AAAAACAAAGAACTTTTAAACGGTAAAACATGTGTTATCACTGGTTCTAC
GTCCGGTATTGGACAAGCTGTTGCTAAGGACCTGGCATGCCGAAATGGCA
ATATTATCATAGCGTGTCGTGATGTTCAAAAGGGGAGTAAAACTGCATTA
ATGATTCGAAATTCGGTACCACACCCGGTCAACGTTTCCGTCTACCATCT
TGACTTAGCCTCGATGGACTCCATCCGACAATTCGCTTTCGAGTTGAACA
AGAACAGTGTTGACATTGACATCTTGGTGAACAATGCTGGACTATTTGGT
GCACCCTTCACACTAAGTCAAGATGGCTACGAATTACATTTTGCCGTCAA
TCACTTANTGCACCCTTCACACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003678XLOC_003678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006472-proteinTCONS_00006472-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006472-exon-sc0000067-1575043694:59786..60702TCONS_00006472-exon-sc0000067-1575043694:59786..60702Clytia hemisphaericaexon
TCONS_00006472-exon-sc0000067-1575043694:58235..59569TCONS_00006472-exon-sc0000067-1575043694:58235..59569Clytia hemisphaericaexon
TCONS_00006472-exon-sc0000067-1510915933:59786..60702TCONS_00006472-exon-sc0000067-1510915933:59786..60702Clytia hemisphaericaexon
TCONS_00006472-exon-sc0000067-1510915933:58235..59569TCONS_00006472-exon-sc0000067-1510915933:58235..59569Clytia hemisphaericaexon
TCONS_00006472-exon-sc0000067-1491911889:59786..60702TCONS_00006472-exon-sc0000067-1491911889:59786..60702Clytia hemisphaericaexon
TCONS_00006472-exon-sc0000067-1491911889:58235..59569TCONS_00006472-exon-sc0000067-1491911889:58235..59569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:58235..60702 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.2335	42.4046	53.3442	56.4533	17.3226	13.2485	23.2263	24.9217	14.9837	12.5993	11.9609	12.2531	7.64413	6.89901	9.9159	12.2918	15.9622	14.3503	3.44858	5.79794	12.2073	12.606	27.1745	25.125	12.0818	12.6696	5.24971	4.4046	12.566	14.5262
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00006472 vs. Swiss-Prot (Human)
Match: RDH14 (Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.523e-37
Identity = 85/188 (45.21%), Postives = 127/188 (67.55%), Query Frame = 2 
Query:  647 PFTLSQDGYELHFAVNHXXXXXXXXXXXPRMKNKPDARIVMVSSALYKRSLSADFQHFNDEKNFTSFNAYSLSKLANIMFTLELSKRLP-KGITINAMHPGIVFTDLARYRIGGNVFLRYLYNIFGTLFLRSSEVGAQTIIHMVTEPSLKGVSGKYFGECRVEELKENAKDERVAEKLFELSEQLCGV 1207
            P+  ++DG+E+ F VNHLG FLLT+LLL  +K+   +RIV+VSS LYK     +F   N E+++     YS SKLANI+FT EL++RL    +T+N +HPGIV T+L R+ I   + ++ L+N+    F ++   GAQT I++ + P ++GVSG+YFG+C+ EEL   A DE VA KL+++SE + G+
Sbjct:  149 PYMKTEDGFEMQFGVNHLGHFLLTNLLLGLLKSSAPSRIVVVSSKLYKYG-DINFDDLNSEQSYNKSFCYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRH-IHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVEGVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGL 334

HSP 2 Score: 99.3673 bits (246), Expect = 2.583e-22
Identity = 50/139 (35.97%), Postives = 78/139 (56.12%), Query Frame = 3 
Query:  267 SRYARCKNKELLNGKTCVITGSTSGIGQAVAKDLACRNGNIIIACRDVQKGSKTALMIRNSV-------PHPV-----NVSVYHLDLASMDSIRQFAFELNKNSVDIDILVNNAGLFGAPFTLSQDGYELHFAVNHLXH 647
             R  R  +  L++GKT +ITG+ SG+G+A A +L      +I+ CRD  +  + A  +R  +       P P       + V  LDLAS+ S+R F  E+ +    +D+L+NNAG+F  P+  ++DG+E+ F VNHL H
Sbjct:   30 QRLRRGGDPGLMHGKTVLITGANSGLGRATAAELLRLGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLGH 168
The following BLAST results are available for this feature:
BLAST of TCONS_00006472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDH144.523e-3745.21Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 ... [more]
back to top