TCONS_00006472-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006472-protein
Unique NameTCONS_00006472-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length174

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006472-protein ID=TCONS_00006472-protein|Name=TCONS_00006472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
MTSSFLQDLKDEIYHHMPTFNPSGSYVTLGIGAGILVCCRFYLSSRYARC
KNKELLNGKTCVITGSTSGIGQAVAKDLACRNGNIIIACRDVQKGSKTAL
MIRNSVPHPVNVSVYHLDLASMDSIRQFAFELNKNSVDIDILVNNAGLFG
APFTLSQDGYELHFAVNHLXHPSH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003678XLOC_003678Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006472TCONS_00006472Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002347Short-chain dehydrogenase/reductase SDRPRINTSPR00081GDHRDHcoord: 60..77
score: 42.13
coord: 137..148
score: 53.89
IPR002347Short-chain dehydrogenase/reductase SDRPFAMPF00106adh_shortcoord: 59..150
e-value: 8.9E-14
score: 51.3
NoneNo IPR availableGENE3D3.40.50.720coord: 31..171
e-value: 9.6E-27
score: 93.1
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 56..170

Blast
[Close]
BLAST of TCONS_00006472-protein vs. Swiss-Prot (Human)
Match: RDH13 (Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.635e-33
Identity = 63/144 (43.75%), Postives = 91/144 (63.19%), Query Frame = 0 
Query:   29 LGIGAGILVCCRFYLSSRYARCKNKELLNGKTCVITGSTSGIGQAVAKDLACRNGNIIIACRDVQKGSKTALMIR-NSVPHPVNVSVYHLDLASMDSIRQFAFELNKNSVDIDILVNNAGLFGAPFTLSQDGYELHFAVNHLXH 171
            LG  AG  V  + Y++     C +K  + GKT ++TG+ +GIG+  A +LA R GNII+ACRD++K    A  IR  ++ H VN    HLDLAS+ SIR+FA ++ +    +DIL+NNAG+   P   ++DG+E+ F VNHL H
Sbjct:   11 LGTVAGAAVLLKDYVTG--GACPSKATIPGKTVIVTGANTGIGKQTALELARRGGNIILACRDMEKCEAAAKDIRGETLNHHVNAR--HLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHWTTEDGFEMQFGVNHLGH 150
The following BLAST results are available for this feature:
BLAST of TCONS_00006472-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RDH139.635e-3343.75Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 ... [more]
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