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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006397 ID=TCONS_00006397|Name=TCONS_00006397|organism=Clytia hemisphaerica|type=transcript|length=2115bpRun BLAST on NCBI protein sequence of TCONS_00006397-protein >TCONS_00006397-protein ID=TCONS_00006397-protein|Name=TCONS_00006397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp MKRRNPMTKQKYKLXIENEKKKSNDKTKVPTKTAPKETKKPAGPSRPTKPRun BLAST on NCBI transcript from alignment at sc0000067:160463..175057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006397 ID=TCONS_00006397|Name=TCONS_00006397|organism=Clytia hemisphaerica|type=transcript|length=14595bp|location=Sequence derived from alignment at sc0000067:160463..175057+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000067:160463..175057+ >TCONS_00006397 ID=TCONS_00006397|Name=TCONS_00006397|organism=Clytia hemisphaerica|type=CDS|length=15834bp|location=Sequence derived from alignment at sc0000067:160463..175057+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006397 vs. Swiss-Prot (Human)
Match: SPAST (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1) HSP 1 Score: 308.531 bits (789), Expect = 2.573e-94 Identity = 187/346 (54.05%), Postives = 246/346 (71.10%), Query Frame = 1
Query: 598 GLGPSSRSHVPAKRITPASTTSIKMTRGQPSTGTPGATKDEHKKKLSHLKNIDRKFIDMILNEAVEDDRKVTFDDIGGMDLPKELLTEMVILPSERPELFQGLRSPARGLLLFGPPGNGXXXXXXXXXXXXXXVFFNISAATLTSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRMKTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDHNTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGXXXXXXXXXXXXXPIRELTREELRSIPADKVRGVKLEDFYXXXXXXXXXXXXDHLSKFVDWNKEFGSS 1635
G GP+ +H + TP + + K PST T T KK L + +N+D ++I+NE V++ V FDDI G DL K+ L E+VILPS RPELF GLR+PARGLLLFGPPGNGKT+LAKA+A+E+ A FFNISAA+LTSK++GEGEK VRALFAVARELQP+IIFIDE+DSLL R+E EH+ASRR+KTEFL DG+ + +R+LV+GATN P ELD A LRR KRVY LP+ TR +LK + KQ + L++K+ +++ +GYSGSDL ALA DAA PIREL E+++++ A ++R ++L DF SLK + +SVS L ++ WNK+FG +
Sbjct: 281 GSGPAPTTH----KGTPKTNRTNK-----PSTPT---TATRKKKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 614 The following BLAST results are available for this feature:
BLAST of TCONS_00006397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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