TCONS_00006397-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006397-protein
Unique NameTCONS_00006397-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006397-protein ID=TCONS_00006397-protein|Name=TCONS_00006397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
MKRRNPMTKQKYKLXIENEKKKSNDKTKVPTKTAPKETKKPAGPSRPTKP
ITKKSVPGLGPSSRSHVPAKRITPASTTSIKMTRGQPSTGTPGATKDEHK
KKLSHLKNIDRKFIDMILNEAVEDDRKVTFDDIGGMDLPKELLTEMVILP
SERPELFQGLRSPARGLLLFGPPGNGKTLLAKALASEAKAVFFNISAATL
TSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRM
KTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDH
NTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGSDLAALASDAAQQPI
RELTREELRSIPADKVRGVKLEDFYSSLKNVSKSVSSDHLSKFVDWNKEF
GSSGS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003654XLOC_003654Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006397TCONS_00006397Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR003959ATPase_AAA_core
IPR015415Vps4_C
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003593AAA+ ATPase domainSMARTSM00382AAA_5coord: 163..299
e-value: 4.3E-17
score: 72.8
IPR003959ATPase, AAA-type, corePFAMPF00004AAAcoord: 167..296
e-value: 2.2E-37
score: 128.3
NoneNo IPR availableGENE3D1.10.8.60coord: 305..403
e-value: 1.6E-18
score: 66.1
NoneNo IPR availableGENE3D3.40.50.300coord: 118..304
e-value: 1.1E-48
score: 164.8
NoneNo IPR availableCDDcd00009AAAcoord: 161..297
e-value: 3.41396E-21
score: 87.5867
IPR015415Vps4 oligomerisation, C-terminalPFAMPF09336Vps4_Ccoord: 360..401
e-value: 2.0E-6
score: 27.6
IPR003960ATPase, AAA-type, conserved sitePROSITEPS00674AAAcoord: 269..288
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 126..398

Blast
[Close]
BLAST of TCONS_00006397-protein vs. Swiss-Prot (Human)
Match: SPAST (Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 3.476e-121
Identity = 187/346 (54.05%), Postives = 246/346 (71.10%), Query Frame = 0 
Query:   58 GLGPSSRSHVPAKRITPASTTSIKMTRGQPSTGTPGATKDEHKKKLSHLKNIDRKFIDMILNEAVEDDRKVTFDDIGGMDLPKELLTEMVILPSERPELFQGLRSPARGLLLFGPPGNGKTLLAKALASEAKAVFFNISAATLTSKWIGEGEKTVRALFAVARELQPAIIFIDEIDSLLTARKENEHEASRRMKTEFLTSMDGMSAEQGERILVLGATNVPWELDTAALRRLPKRVYAPLPDHNTRKDILKKTMRKQNNVLSEKDYDKISSAAEGYSGSDLAALASDAAQQPIRELTREELRSIPADKVRGVKLEDFYSSLKNVSKSVSSDHLSKFVDWNKEFGSS 403
            G GP+  +H    + TP +  + K     PST T    K   KK L + +N+D    ++I+NE V++   V FDDI G DL K+ L E+VILPS RPELF GLR+PARGLLLFGPPGNGKT+LAKA+A+E+ A FFNISAA+LTSK++GEGEK VRALFAVARELQP+IIFIDE+DSLL  R+E EH+ASRR+KTEFL   DG+ +   +R+LV+GATN P ELD A LRR  KRVY  LP+  TR  +LK  + KQ + L++K+  +++   +GYSGSDL ALA DAA  PIREL  E+++++ A ++R ++L DF  SLK + +SVS   L  ++ WNK+FG +
Sbjct:  281 GSGPAPTTH----KGTPKTNRTNK-----PSTPTTATRK---KKDLKNFRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 614
The following BLAST results are available for this feature:
BLAST of TCONS_00006397-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPAST3.476e-12154.05Spastin OS=Homo sapiens GN=SPAST PE=1 SV=1[more]
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