TCONS_00006390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006390
Unique NameTCONS_00006390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006390 ID=TCONS_00006390|Name=TCONS_00006390|organism=Clytia hemisphaerica|type=transcript|length=2763bp
attttggttaGCTTTGATTTGGTTTTGGTGAACAGGGAAGATGTGCTGTC
AAATTGCTTGAAGGTTTTcaatttatctttttctttagataaataaaaat
atcttagaTGTAAAATGCAAGAAATCGAAAACTATCCAATGGTTAGGTTG
AGGAAAATCCGAGAAACATCCTTGAAAAGTGACCCCTCAAACTTCATCTA
TCTGTCTTCTACAAAGCCTACAATAATAGGCCGGGTCATAGCTGATGATG
TCAACACACGAATGCTATCTAAATCGACACCATTAATGATCTCTAGAAGG
CATGCCACTgtcacttttgaaaatggaaagGTGTTTGTTGTTGATCACAG
CAGCTTGAATGGAGTGTACATCAGGAATAAAAGAATTAGATCTGGTGTGA
AAGCGGAGGTCAAAATTGGTGATCGGGTTGCATTTGGTTGTGGTATTGAT
AAGGGCAGCCCACCTGAATTTGAATACTATGTTGAAAATGCTCAATCTAA
ACACAAAACCGCAAATCCTAACTTATCAGCTTCACCTTTAAaacgaaaaa
gattttttgagccACCATCAATTACCATCATTGAATCCAATACTGCGCAA
ATCAAAGAGCAAGAGCAGAAAATAAAATCTCTTAGTGAATCTTTGCAAGA
AAAAGAGAAACAACATAAGAATATGCTTAGTCAATTTGAGGAAACTCAAA
GTGATCTTTTGAAACAACTTGAAAATTCCAAACTTCAGCTTGAGAATGAA
CGTCAAGAAGCTGAACTACATCTGAAGGGTCTACTTGAAAATCAATTACA
TGAACAGGAATCAGCTCTAAAATCTCAATTTGACATGCAAATTAGGGatc
ttgaacttgaaaaaactcTTGTTGAGACAAATCTTCAACAAGAACTATCC
AAAAAGCTCTCAGAAAAAGATGAAGCTTATCAAAAAGAGCTAgagaaaca
aaaacttgagcttGAAACTACCATCTATGccaaagaaagtgaaaaaagta
ATCTTCTCAGCGAATTAAGGGCCAAAGAGCAAGTCATTGAAAAGTATCAA
TCTGTTGAAGAAAATCAGAAGCAACTTGAACAATGTTTACAAGAACTACG
AGATGAAATAAGTGAGAAAGAAAACCAATTGGAACAACAAAAGGAAATCA
CTAAAAAAGTTGAGATTGATGCCAAACAGAGTGCCATGCTATGCATGGAA
GATGAATTTTCATGTATCATATGCTCACATTACTTTATTGAGGCAACAAC
ATTACCTTGTGCTCACACATTCTGTTCATTCTGTCTTTGGGAAtggttaa
aaaagaaaaagaattgccCTGTATGCAGACGTAAAATGAAAGGAAAAGCA
GTTCGATCGTTAGTCCTTGACAGTTGTGTAGAGAAACTGGTTGAAACCTT
TTCTGACGCAGAAAAAGAGGCTCGTGTTACGGAGCAAACGAAACGTGAAA
CAATTATAAAGAAAGATGAATCTTCGGAAGATGCCGAAGGTATTCGAGAA
TTATTCCACAGAATTGAAGATTCTGATGTAGATGATACGCCCGCACGATC
TAACGATCGAAATAATGCTCAAAATCGAAACGGGCGACGTGATGGTGGAT
ATCGAAGGCGCTCTCGATCCAGGTCGCCCAGAAATCACCGTCACCGCCCT
TATCATGACGGGCGTTACAACAATCAGAACAATAACTTCGTCAACAACAT
GTACCCGCCGCAAGCACAAGCGCGCTATCACCAAGAGCGTTCAGGCGGTG
GCAATTTCCACAATTATTTTACGAATGGTTTTCACAGTCACTTAACAAAC
CAATATGCCAATCATCACAACAATGCACGCTGTTTTAATTGCGGTGGACT
AGACCATATTGCACGTTACTGTCCCAGAGGTCCACGATAGATGTGTCAAT
GtctgaaacttctttttttttgtaaataaccCATTGATATTTGTAGctta
aaaaaataaagtgtacataggaaattgtatttttgaaacGGAAAGGGCAA
AATTGAAAAGGTGcttggttttgatttttgtacGGGTTTTACTGTATATG
TACTGGAAAAGCAAAGTCTTTTCACTTTCTGTCTATGCAAATATTACCTA
ATTTGTGTTTAGCTAAAGTGATTTCTTGATAAAGTTTGTCTCTATGTGTA
TCTTTATCTGTCGataaaattcgaattagatagcggttgattgctcgttg
aaaagataatcagaagtaaatagaaaaatacaaagacTGAAAAATGAAca
tggaaaatgaagaaaaaaacacttcttGTAGAATTGTACATGAATTGTAC
TATTATCACTCTCTGaaataatttctaaaaattttccaTCAAGTCAAAAA
ATACAGATTAGAACATTTGTCTGGTTATGAGTCAatccttttcaattttt
atcttcattctccaaagttttttgaaaatatttctttacgTGAATACCAT
TTTCATCGACTACAAAGCCGCTATTTGAGGATCGATACAAGAAGTTACCG
TTTTCTCCGCTGCCGAGTTTTTTTAGGCAGACTTTTTCTTTAGTAAGGTG
ATGGAAATactctaaaaaatatttttctttctataaATTATCTTGTGTTT
ATATTATTCTAATAATCTTATTATATCTTATTCGAGTTATCCTTAGAAAT
TAATAGGGATGTAATCATTATTTCAAGCTTTTTATGATGTTGTCATGAGC
AATTTCATTGGCCataatttgtttatttaaaaaaagttcttcATATTTTA
CTCATTACATCaa
Run BLAST on NCBI

protein sequence of TCONS_00006390-protein

>TCONS_00006390-protein ID=TCONS_00006390-protein|Name=TCONS_00006390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
MQEIENYPMVRLRKIRETSLKSDPSNFIYLSSTKPTIIGRVIADDVNTRM
LSKSTPLMISRRHATVTFENGKVFVVDHSSLNGVYIRNKRIRSGVKAEVK
IGDRVAFGCGIDKGSPPEFEYYVENAQSKHKTANPNLSASPLKRKRFFEP
PSITIIESNTAQIKEQEQKIKSLSESLQEKEKQHKNMLSQFEETQSDLLK
QLENSKLQLENERQEAELHLKGLLENQLHEQESALKSQFDMQIRDLELEK
TLVETNLQQELSKKLSEKDEAYQKELEKQKLELETTIYAKESEKSNLLSE
LRAKEQVIEKYQSVEENQKQLEQCLQELRDEISEKENQLEQQKEITKKVE
IDAKQSAMLCMEDEFSCIICSHYFIEATTLPCAHTFCSFCLWEWLKKKKN
CPVCRRKMKGKAVRSLVLDSCVEKLVETFSDAEKEARVTEQTKRETIIKK
DESSEDAEGIRELFHRIEDSDVDDTPARSNDRNNAQNRNGRRDGGYRRRS
RSRSPRNHRHRPYHDGRYNNQNNNFVNNMYPPQAQARYHQERSGGGNFHN
YFTNGFHSHLTNQYANHHNNARCFNCGGLDHIARYCPRGPR
Run BLAST on NCBI

transcript from alignment at sc0000067:153959..159031+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006390 ID=TCONS_00006390|Name=TCONS_00006390|organism=Clytia hemisphaerica|type=transcript|length=5073bp|location=Sequence derived from alignment at sc0000067:153959..159031+ (Clytia hemisphaerica)
attttggttaGCTTTGATTTGGTTTTGGTGAACAGGGAAGATGTGCTGTC
AAATTGCTTGAAGGTTTTcaatttatctttttctttagataaataaaaat
atcttagaTGTAAAATGCAAGAAATCGAAAACTATCCAATGGTTAGGTTG
AGGAAAATCCGAGAAACATCCTTGAAAAGTGACCCCTCAAACTTCATCTA
TCTGTCTTCTACAAAGCCTACAATAATAGGCCGGGTCATAGCTGATGATG
TCAACACACGAATGCTATCTAAATCGACACCATTAATGATCTCTAGAAGG
CATGCCACTgtcacttttgaaaatggaaagGTGTTTGTTGTTGATCACAG
CGTAAGTTTTTGAtcattcattttcattttacacTTTACTTGAAACATGA
CCGGGAAACCGAGAAAAGATAATTGTCTTCTGATGGGGTatcagggctcg
aaataacggtcagacatcggacattgtccaacccaaatagcttcatgacc
gacccaaaaatcataattttcaagctaaagcaaccctgatcggacatttt
tgtccgacccacttgaaatcgttatttcgagccttgggtatagttgtttt
aacattttttgtatAGTATATCTATCTCCAGCAAGAAAAAATCAATCCAT
ATTTTCAGCATATTTGTGCCAATATTTGATTGCACTGTACTTCAATGTTA
TTCTCAAGCTGAAAATTCACTTAATTTTTTCCTGCATTTTATCACTTTCG
TTTTAGGcttcttttaaaatgtttttcttttttaatttttcttctttgtt
atTTGCAAGAacacaatttcaaaattctaatttttctcTTGGATACTGTA
AACCATACTTAAAGATTGGAGGGGTACAGTAGCTAGTTTTTATTAGATTT
ACAGTAAAATAAGCTGCTTATAACTCACTTATACCCGCTTATACTGTAAT
TTAACCTCATAACTTCAAATTTTATTCTTTCTACAGTAGCTACATCTATA
TTGTAgtttggtctaatgtcgacatccttcttctaattttgacacccttc
tttagagatgggAATAATAAAAAGGATTTATTCCTCTCTGATCgctacaa
agtaaacaaaattagtttcaatcagtgaATTCGACCTTCCCATTATTCGT
CAACTAACTGACGGTATAGatcttttttttgataatttattgTATCTTTT
TTTTCAGAGCTTGAATGGAGTGTACATCAGGAATAAAAGAATTAGATCTG
GTGTGAAAGCGGAGGTCAAAATTGGTGATCGGGTTGCATTTGGTTGTGGT
ATTGATAAGGGCAGCCCACCTGAATTTGAATACTATGTTGAAAATGCTCA
ATCTAAACACAAAACCGCAAATCCTAACTTATCAGCTTCACCTTTAAaac
gaaaaagattttttgagccACCATCAATTACCATCATTGAATCCAATACT
GCGCAAATCAAAGAGCAAGAGCAGAAAATAAAATCTCTTAGTGAATCTTT
GCAAGAAAAAGAGAAACAACATAAGAATATGCTTAGTCAATTTGAGGAAA
CTCAAAGTGATCTTTTGAAACAACTTGAAAATTCCAAACTTCAGCTTGAG
AATGAACGTCAAGAAGCTGAACTACATCTGAAGGGTCTACTTGAAAATCA
ATTACATGAACAGGAATCAGCTCTAAAATCTCAATTTGACATGCAAATTA
GGGatcttgaacttgaaaaaactcTTGTTGAGACAAATCTTCAACAAGAA
CTATCCAAAAAGCTCTCAGAAAAAGATGAAGCTTATCAAAAAGAGCTAga
gaaacaaaaacttgagcttGAAACTACCATCTATGccaaagaaagtgaaa
aaagtaATCTTCTCAGCGAATTAAGGGCCAAAGAGCAAGTCATTGAAAAG
TATCAATCTGTTGAAGAAAATCAGAAGCAACTTGAACAATGTTTACAAGA
ACTACGAGATGAAATAAGTGAGAAAGAAAACCAATTGGAACAACAAAAGG
AAATCACTAAAAAAGTTGAGATTGATGCCAAACAGAGTGCCATGCTATGC
ATGGAAGATGAATTTTCATGTATCATATGCTCACATTACTTTATTGAGGC
AACAACATTACCTTGTGCTCACACATTCTGTTCATTCTGTCTTTGGGAAt
ggttaaaaaagaaaaagaattgccCTGTATGCAGACGTAAAATGAAAGGA
AAAGCAGTTCGATCGTTAGTCCTTGACAGTTGTGTAGAGAAACTGGTTGA
AACCTTTTCTGACGCAGAAAAAGAGGCTCGTGTTACGGAGCAAACGAAAC
GTGAAACAATTATAAAGAAAGATGAATCTTCGGAAGGTAATTTATCCCCA
AAAGTAGAGGAAGTTGAGGGTGATTTGATTCCTCTGCCTACTGCAAATAA
CAGGCCTGGAAACCGTGAAATTATTCAAATAGATTGAAAGTCTTCTATTA
TTTTATTGGTATAAAATTgaattcaaacaaaaattcataaaacatGAAAG
CTAACAAATTTCACCATTCATATTATTTAGGGAGTCAATTTTCTGACCGA
TTTAGAGTTTTTTAAACGAAagttttcttatgtttttaaAGAGGTattat
atatttgaaaaaataggtCTTACAAGGTTTTTATTATGTATATAGCATTG
GTATGTTCATATTTGTCACAACATtacaaaagagaaaaatatttagtaAA
ACTCATAACAATACTTCATGATTGAAGATGAGTATCGAAAACGAATTTTT
GAAGcgttatttttgttaatttattaAAATGCATGAGTTAAAGCAAACTA
ACTAAAAACATGATCATttatgaaatattcaaaaaaatattttagattga
ATCATTTTGGTAGTTTGGTAGGTAGTTGTTGTTCTTCGGTTTTTTCTCAG
TGTTGATTTAGAAAAAGGATTTAGGGCTTGATTTTCCCTGTTGTATAACT
TAAAATTCTTTTGTGTCTTGTTTATTTCTTTGTCTTAGAGAAAAAATTTT
ATCGTCTACAAAAACACTGAAAGATAACACTAGtagtttgaaaatgtttt
tttcaaaacatcgtAAAACGTTGAACTGGTTTCGTTCGTTGACTGCACGT
CTCTTCATCATCACTTCAACAATATCTTCGGATTGAGATATTAAACACAC
ATTTCCTAAAAAAAATGTGATCGCCTAACAAATTATCGTAAAgtatcatt
tcaatttcaatgtaCTCAAAAAGTACAAAACCTGAACAATTAGGACAGCC
TAAGTTCCTTGATCTATCAATTTAACACATACAAAGCGTCTAGCAATACA
TACTCTAATCTTTGTTATTTCGTTAAGTCTTTGAGAGGGAAAAAGGTTGA
TTAATACTTGGAtcgaatcataaaaaagaactTCTTGTTTCCTGTGCCAT
atgattcaaaaataaatttagctGGGGAAAAGAGAATTTACACTCCGTTC
TGTGGAAAGGTGCGAAATTTAACGATATTTCTACGCATTCTAAGGCGTCC
AGAACAAAGACCTCAAAAGTTCACTTGCTGTACTGATGTATGTCTTTGTT
TTGGATGCCACGCAGAACTAGaagattttaatgttttcataTTTCTCTTT
TAGATGCCGAAGGTATTCGAGAATTATTCCACAGAATTGAAGATTCTGAT
GTAGATGATACGCCCGCACGATCTAACGATCGAAATAATGCTCAAAATCG
AAACGGGCGACGTGATGGTGGATATCGAAGGCGCTCTCGATCCAGGTCGC
CCAGAAATCACCGTCACCGCCCTTATCATGACGGGCGTTACAACAATCAG
AACAATAACTTCGTCAACAACATGTACCCGCCGCAAGCACAAGCGCGCTA
TCACCAAGAGCGTTCAGGCGGTGGCAATTTCCACAATTATTTTACGAATG
GTTTTCACAGTCACTTAACAAACCAATATGCCAATCATCACAACAATGCA
CGCTGTTTTAATTGCGGTGAGATCTTTGTTTCCAATCTTAACGTCTTTCA
TTTTGCAATTCATTAGATCTATCCCATCGAGATTTTAATTGATTCTAAAT
AAGCTATTTCTTTTAGAGTATTTCAGATATGTGCACTGCTGTAGTGTTTC
CACTGATAATAGTTTGAGCAATGCTGAATAATATTCCACTCTTGTTATTT
TAGGTGGACTAGACCATATTGCACGTTACTGTCCCAGAGGTCCACGATAG
ATGTGTCAATGtctgaaacttctttttttttgtaaataaccCATTGATAT
TTGTAGcttaaaaaaataaagtgtacataggaaattgtatttttgaaacG
GAAAGGGCAAAATTGAAAAGGTGcttggttttgatttttgtacGGGTTTT
ACTGTATATGTACTGGAAAAGCAAAGTCTTTTCACTTTCTGTCTATGCAA
ATATTACCTAATTTGTGTTTAGCTAAAGTGATTTCTTGATAAAGTTTGTC
TCTATGTGTATCTTTATCTGTCGataaaattcgaattagatagcggttga
ttgctcgttgaaaagataatcagaagtaaatagaaaaatacaaagacTGA
AAAATGAAcatggaaaatgaagaaaaaaacacttcttGTAGAATTGTACA
TGAATTGTACTATTATCACTCTCTGaaataatttctaaaaattttccaTC
AAGTCAAAAAATACAGATTAGAACATTTGTCTGGTTATGAGTCAatcctt
ttcaatttttatcttcattctccaaagttttttgaaaatatttctttacg
TGAATACCATTTTCATCGACTACAAAGCCGCTATTTGAGGATCGATACAA
GAAGTTACCGTTTTCTCCGCTGCCGAGTTTTTTTAGGCAGACTTTTTCTT
TAGTAAGGTGATGGAAATactctaaaaaatatttttctttctataaATTA
TCTTGTGTTTATATTATTCTAATAATCTTATTATATCTTATTCGAGTTAT
CCTTAGAAATTAATAGGGATGTAATCATTATTTCAAGCTTTTTATGATGT
TGTCATGAGCAATTTCATTGGCCataatttgtttatttaaaaaaagttct
tcATATTTTACTCATTACATCaa

Coding sequence (CDS) from alignment at sc0000067:153959..159031+

>TCONS_00006390 ID=TCONS_00006390|Name=TCONS_00006390|organism=Clytia hemisphaerica|type=CDS|length=7104bp|location=Sequence derived from alignment at sc0000067:153959..159031+ (Clytia hemisphaerica)
ATGCAAGAAATCGAAAACTATCCAATGGTTAGGTTGAGGAAAATCCGAGA
AACATCCTTGAAAAGTGACCCCTCAAACTTCATCTATCTGTCTTCTACAA
AGCCTACAATAATAGGCCGGGTCATAGCTGATGATGTCAACACACGAATG
CTATCTAAATCGACACCATTAATGATCTCTAGAAGGCATGCCACTgtcac
ttttgaaaatggaaagGTGTTTGTTGTTGATCACAGCAGCTTGAATGGAG
TGTACATCAGGAATAAAAGAATTAGATCTGGTGTGAAAGCGGAGGTCAAA
ATTGGTGATCGGGTTGCATTTGGTTGTGGTATTGATAAGGGCAGCCCACC
TGAATTTGAATACTATGTTGAAAATGCTCAATCTAAACACAAAACCGCAA
ATCCTAACTTATCAGCTTCACCTTTAAaacgaaaaagattttttgagccA
CCATCAATTACCATCATTGAATCCAATACTGCGCAAATCAAAGAGCAAGA
GCAGAAAATAAAATCTCTTAGTGAATCTTTGCAAGAAAAAGAGAAACAAC
ATAAGAATATGCTTAGTCAATTTGAGGAAACTCAAAGTGATCTTTTGAAA
CAACTTGAAAATTCCAAACTTCAGCTTGAGAATGAACGTCAAGAAGCTGA
ACTACATCTGAAGGGTCTACTTGAAAATCAATTACATGAACAGGAATCAG
CTCTAAAATCTCAATTTGACATGCAAATTAGGGatcttgaacttgaaaaa
actcTTGTTGAGACAAATCTTCAACAAGAACTATCCAAAAAGCTCTCAGA
AAAAGATGAAGCTTATCAAAAAGAGCTAgagaaacaaaaacttgagcttG
AAACTACCATCTATGccaaagaaagtgaaaaaagtaATCTTCTCAGCGAA
TTAAGGGCCAAAGAGCAAGTCATTGAAAAGTATCAATCTGTTGAAGAAAA
TCAGAAGCAACTTGAACAATGTTTACAAGAACTACGAGATGAAATAAGTG
AGAAAGAAAACCAATTGGAACAACAAAAGGAAATCACTAAAAAAGTTGAG
ATTGATGCCAAACAGAGTGCCATGCTATGCATGGAAGATGAATTTTCATG
TATCATATGCTCACATTACTTTATTGAGGCAACAACATTACCTTGTGCTC
ACACATTCTGTTCATTCTGTCTTTGGGAAtggttaaaaaagaaaaagaat
tgccCTGTATGCAGACGTAAAATGAAAGGAAAAGCAGTTCGATCGTTAGT
CCTTGACAGTTGTGTAGAGAAACTGGTTGAAACCTTTTCTGACGCAGAAA
AAGAGGCTCGTGTTACGGAGCAAACGAAACGTGAAACAATTATAAAGAAA
GATGAATCTTCGGAAGATGCCGAAGGTATTCGAGAATTATTCCACAGAAT
TGAAGATTCTGATGTAGATGATACGCCCGCACGATCTAACGATCGAAATA
ATGCTCAAAATCGAAACGGGCGACGTGATGGTGGATATCGAAGGCGCTCT
CGATCCAGGTCGCCCAGAAATCACCGTCACCGCCCTTATCATGACGGGCG
TTACAACAATCAGAACAATAACTTCGTCAACAACATGTACCCGCCGCAAG
CACAAGCGCGCTATCACCAAGAGCGTTCAGGCGGTGGCAATTTCCACAAT
TATTTTACGAATGGTTTTCACAGTCACTTAACAAACCAATATGCCAATCA
TCACAACAATGCACGCTGTTTTAATTGCGGTGGACTAGACCATATTGCAC
GTTACTGTCCCAGAGGTCCACGATAGATGCAAGAAATCGAAAACTATCCA
ATGGTTAGGTTGAGGAAAATCCGAGAAACATCCTTGAAAAGTGACCCCTC
AAACTTCATCTATCTGTCTTCTACAAAGCCTACAATAATAGGCCGGGTCA
TAGCTGATGATGTCAACACACGAATGCTATCTAAATCGACACCATTAATG
ATCTCTAGAAGGCATGCCACTgtcacttttgaaaatggaaagGTGTTTGT
TGTTGATCACAGCAGCTTGAATGGAGTGTACATCAGGAATAAAAGAATTA
GATCTGGTGTGAAAGCGGAGGTCAAAATTGGTGATCGGGTTGCATTTGGT
TGTGGTATTGATAAGGGCAGCCCACCTGAATTTGAATACTATGTTGAAAA
TGCTCAATCTAAACACAAAACCGCAAATCCTAACTTATCAGCTTCACCTT
TAAaacgaaaaagattttttgagccACCATCAATTACCATCATTGAATCC
AATACTGCGCAAATCAAAGAGCAAGAGCAGAAAATAAAATCTCTTAGTGA
ATCTTTGCAAGAAAAAGAGAAACAACATAAGAATATGCTTAGTCAATTTG
AGGAAACTCAAAGTGATCTTTTGAAACAACTTGAAAATTCCAAACTTCAG
CTTGAGAATGAACGTCAAGAAGCTGAACTACATCTGAAGGGTCTACTTGA
AAATCAATTACATGAACAGGAATCAGCTCTAAAATCTCAATTTGACATGC
AAATTAGGGatcttgaacttgaaaaaactcTTGTTGAGACAAATCTTCAA
CAAGAACTATCCAAAAAGCTCTCAGAAAAAGATGAAGCTTATCAAAAAGA
GCTAgagaaacaaaaacttgagcttGAAACTACCATCTATGccaaagaaa
gtgaaaaaagtaATCTTCTCAGCGAATTAAGGGCCAAAGAGCAAGTCATT
GAAAAGTATCAATCTGTTGAAGAAAATCAGAAGCAACTTGAACAATGTTT
ACAAGAACTACGAGATGAAATAAGTGAGAAAGAAAACCAATTGGAACAAC
AAAAGGAAATCACTAAAAAAGTTGAGATTGATGCCAAACAGAGTGCCATG
CTATGCATGGAAGATGAATTTTCATGTATCATATGCTCACATTACTTTAT
TGAGGCAACAACATTACCTTGTGCTCACACATTCTGTTCATTCTGTCTTT
GGGAAtggttaaaaaagaaaaagaattgccCTGTATGCAGACGTAAAATG
AAAGGAAAAGCAGTTCGATCGTTAGTCCTTGACAGTTGTGTAGAGAAACT
GGTTGAAACCTTTTCTGACGCAGAAAAAGAGGCTCGTGTTACGGAGCAAA
CGAAACGTGAAACAATTATAAAGAAAGATGAATCTTCGGAAGATGCCGAA
GGTATTCGAGAATTATTCCACAGAATTGAAGATTCTGATGTAGATGATAC
GCCCGCACGATCTAACGATCGAAATAATGCTCAAAATCGAAACGGGCGAC
GTGATGGTGGATATCGAAGGCGCTCTCGATCCAGGTCGCCCAGAAATCAC
CGTCACCGCCCTTATCATGACGGGCGTTACAACAATCAGAACAATAACTT
CGTCAACAACATGTACCCGCCGCAAGCACAAGCGCGCTATCACCAAGAGC
GTTCAGGCGGTGGCAATTTCCACAATTATTTTACGAATGGTTTTCACAGT
CACTTAACAAACCAATATGCCAATCATCACAACAATGCACGCTGTTTTAA
TTGCGGTGGACTAGACCATATTGCACGTTACTGTCCCAGAGGTCCACGAT
AGATGCAAGAAATCGAAAACTATCCAATGGTTAGGTTGAGGAAAATCCGA
GAAACATCCTTGAAAAGTGACCCCTCAAACTTCATCTATCTGTCTTCTAC
AAAGCCTACAATAATAGGCCGGGTCATAGCTGATGATGTCAACACACGAA
TGCTATCTAAATCGACACCATTAATGATCTCTAGAAGGCATGCCACTgtc
acttttgaaaatggaaagGTGTTTGTTGTTGATCACAGCAGCTTGAATGG
AGTGTACATCAGGAATAAAAGAATTAGATCTGGTGTGAAAGCGGAGGTCA
AAATTGGTGATCGGGTTGCATTTGGTTGTGGTATTGATAAGGGCAGCCCA
CCTGAATTTGAATACTATGTTGAAAATGCTCAATCTAAACACAAAACCGC
AAATCCTAACTTATCAGCTTCACCTTTAAaacgaaaaagattttttgagc
cACCATCAATTACCATCATTGAATCCAATACTGCGCAAATCAAAGAGCAA
GAGCAGAAAATAAAATCTCTTAGTGAATCTTTGCAAGAAAAAGAGAAACA
ACATAAGAATATGCTTAGTCAATTTGAGGAAACTCAAAGTGATCTTTTGA
AACAACTTGAAAATTCCAAACTTCAGCTTGAGAATGAACGTCAAGAAGCT
GAACTACATCTGAAGGGTCTACTTGAAAATCAATTACATGAACAGGAATC
AGCTCTAAAATCTCAATTTGACATGCAAATTAGGGatcttgaacttgaaa
aaactcTTGTTGAGACAAATCTTCAACAAGAACTATCCAAAAAGCTCTCA
GAAAAAGATGAAGCTTATCAAAAAGAGCTAgagaaacaaaaacttgagct
tGAAACTACCATCTATGccaaagaaagtgaaaaaagtaATCTTCTCAGCG
AATTAAGGGCCAAAGAGCAAGTCATTGAAAAGTATCAATCTGTTGAAGAA
AATCAGAAGCAACTTGAACAATGTTTACAAGAACTACGAGATGAAATAAG
TGAGAAAGAAAACCAATTGGAACAACAAAAGGAAATCACTAAAAAAGTTG
AGATTGATGCCAAACAGAGTGCCATGCTATGCATGGAAGATGAATTTTCA
TGTATCATATGCTCACATTACTTTATTGAGGCAACAACATTACCTTGTGC
TCACACATTCTGTTCATTCTGTCTTTGGGAAtggttaaaaaagaaaaaga
attgccCTGTATGCAGACGTAAAATGAAAGGAAAAGCAGTTCGATCGTTA
GTCCTTGACAGTTGTGTAGAGAAACTGGTTGAAACCTTTTCTGACGCAGA
AAAAGAGGCTCGTGTTACGGAGCAAACGAAACGTGAAACAATTATAAAGA
AAGATGAATCTTCGGAAGATGCCGAAGGTATTCGAGAATTATTCCACAGA
ATTGAAGATTCTGATGTAGATGATACGCCCGCACGATCTAACGATCGAAA
TAATGCTCAAAATCGAAACGGGCGACGTGATGGTGGATATCGAAGGCGCT
CTCGATCCAGGTCGCCCAGAAATCACCGTCACCGCCCTTATCATGACGGG
CGTTACAACAATCAGAACAATAACTTCGTCAACAACATGTACCCGCCGCA
AGCACAAGCGCGCTATCACCAAGAGCGTTCAGGCGGTGGCAATTTCCACA
ATTATTTTACGAATGGTTTTCACAGTCACTTAACAAACCAATATGCCAAT
CATCACAACAATGCACGCTGTTTTAATTGCGGTGGACTAGACCATATTGC
ACGTTACTGTCCCAGAGGTCCACGATAGATGCAAGAAATCGAAAACTATC
CAATGGTTAGGTTGAGGAAAATCCGAGAAACATCCTTGAAAAGTGACCCC
TCAAACTTCATCTATCTGTCTTCTACAAAGCCTACAATAATAGGCCGGGT
CATAGCTGATGATGTCAACACACGAATGCTATCTAAATCGACACCATTAA
TGATCTCTAGAAGGCATGCCACTgtcacttttgaaaatggaaagGTGTTT
GTTGTTGATCACAGCAGCTTGAATGGAGTGTACATCAGGAATAAAAGAAT
TAGATCTGGTGTGAAAGCGGAGGTCAAAATTGGTGATCGGGTTGCATTTG
GTTGTGGTATTGATAAGGGCAGCCCACCTGAATTTGAATACTATGTTGAA
AATGCTCAATCTAAACACAAAACCGCAAATCCTAACTTATCAGCTTCACC
TTTAAaacgaaaaagattttttgagccACCATCAATTACCATCATTGAAT
CCAATACTGCGCAAATCAAAGAGCAAGAGCAGAAAATAAAATCTCTTAGT
GAATCTTTGCAAGAAAAAGAGAAACAACATAAGAATATGCTTAGTCAATT
TGAGGAAACTCAAAGTGATCTTTTGAAACAACTTGAAAATTCCAAACTTC
AGCTTGAGAATGAACGTCAAGAAGCTGAACTACATCTGAAGGGTCTACTT
GAAAATCAATTACATGAACAGGAATCAGCTCTAAAATCTCAATTTGACAT
GCAAATTAGGGatcttgaacttgaaaaaactcTTGTTGAGACAAATCTTC
AACAAGAACTATCCAAAAAGCTCTCAGAAAAAGATGAAGCTTATCAAAAA
GAGCTAgagaaacaaaaacttgagcttGAAACTACCATCTATGccaaaga
aagtgaaaaaagtaATCTTCTCAGCGAATTAAGGGCCAAAGAGCAAGTCA
TTGAAAAGTATCAATCTGTTGAAGAAAATCAGAAGCAACTTGAACAATGT
TTACAAGAACTACGAGATGAAATAAGTGAGAAAGAAAACCAATTGGAACA
ACAAAAGGAAATCACTAAAAAAGTTGAGATTGATGCCAAACAGAGTGCCA
TGCTATGCATGGAAGATGAATTTTCATGTATCATATGCTCACATTACTTT
ATTGAGGCAACAACATTACCTTGTGCTCACACATTCTGTTCATTCTGTCT
TTGGGAAtggttaaaaaagaaaaagaattgccCTGTATGCAGACGTAAAA
TGAAAGGAAAAGCAGTTCGATCGTTAGTCCTTGACAGTTGTGTAGAGAAA
CTGGTTGAAACCTTTTCTGACGCAGAAAAAGAGGCTCGTGTTACGGAGCA
AACGAAACGTGAAACAATTATAAAGAAAGATGAATCTTCGGAAGATGCCG
AAGGTATTCGAGAATTATTCCACAGAATTGAAGATTCTGATGTAGATGAT
ACGCCCGCACGATCTAACGATCGAAATAATGCTCAAAATCGAAACGGGCG
ACGTGATGGTGGATATCGAAGGCGCTCTCGATCCAGGTCGCCCAGAAATC
ACCGTCACCGCCCTTATCATGACGGGCGTTACAACAATCAGAACAATAAC
TTCGTCAACAACATGTACCCGCCGCAAGCACAAGCGCGCTATCACCAAGA
GCGTTCAGGCGGTGGCAATTTCCACAATTATTTTACGAATGGTTTTCACA
GTCACTTAACAAACCAATATGCCAATCATCACAACAATGCACGCTGTTTT
AATTGCGGTGGACTAGACCATATTGCACGTTACTGTCCCAGAGGTCCACG
ATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003653XLOC_003653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006390-exon-sc0000067-1491911889:153959..154309TCONS_00006390-exon-sc0000067-1491911889:153959..154309Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1510915933:153959..154309TCONS_00006390-exon-sc0000067-1510915933:153959..154309Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1575043694:153959..154309TCONS_00006390-exon-sc0000067-1575043694:153959..154309Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1491911889:155166..156294TCONS_00006390-exon-sc0000067-1491911889:155166..156294Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1510915933:155166..156294TCONS_00006390-exon-sc0000067-1510915933:155166..156294Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1575043694:155166..156294TCONS_00006390-exon-sc0000067-1575043694:155166..156294Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1491911889:157562..157924TCONS_00006390-exon-sc0000067-1491911889:157562..157924Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1510915933:157562..157924TCONS_00006390-exon-sc0000067-1510915933:157562..157924Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1575043694:157562..157924TCONS_00006390-exon-sc0000067-1575043694:157562..157924Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1491911889:158112..159031TCONS_00006390-exon-sc0000067-1491911889:158112..159031Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1510915933:158112..159031TCONS_00006390-exon-sc0000067-1510915933:158112..159031Clytia hemisphaericaexon
TCONS_00006390-exon-sc0000067-1575043694:158112..159031TCONS_00006390-exon-sc0000067-1575043694:158112..159031Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006390-proteinTCONS_00006390-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000067supercontigsc0000067:153959..159031 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.5678	12.4368	9.01652	7.22423	19.8498	15.3655	24.1637	24.9465	28.3434	20.0964	24.8895	32.0635	38.1214	35.4448	24.8967	19.0719	28.1957	36.0931	37.3428	32.2065	43.6698	42.466	37.7324	41.9867	125.081	80.3351	20.4601	12.5568	22.3872	23.8079
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001878Znf_CCHC
IPR000253FHA_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008984SMAD_FHA_domain
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00006390 vs. Swiss-Prot (Human)
Match: RNF8 (E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.365e-31
Identity = 135/468 (28.85%), Postives = 213/468 (45.51%), Query Frame = 1 
Query:  187 SNFIYLSSTKPTIIGRVIADDVNTRMLSKSTPLMISRRHATVT-FENGKVFVVDHSSLNGVYIRNKRIRSGVKAEVKIGDRVAFGCGIDKGSPPEFEYYVENAQSKHKTANPNLSAS---------PLKRKRFFEPPSITIIESNTAQIKEQ-EQKIKSLS-ESLQEKEKQHKNMLSQFEETQSDLLKQLENSKLQLENERQEAELHLKGLLE-NQLHEQESALKSQFDMQIRDLELEKTLVETNLQQELSKKLSEKDEAYXXXXXXXXXXXXTTIYAKESEKSNLLSELRAKE---------------------QVIEKYQSVEENQKQLEQCLQE---LRDE-----------ISEKENQLEQQKEITKKVEIDAKQSAML-----CMEDEFSCIICSHYFIEATTLPCAHTFCSFCLWEWLKKKKNCPVCRRKMKGKAVRSLVLDSCVEKLVETFSDAEKEARVT 1431
            + ++ L       +GR     V  +++SK  PLMISR H  +     G+  ++D+ SLNGV++   R+       +  GD +  G  ++     E+EY V   +   +T  P LS            L+ KR F   S+  +    A+     + KI  +S ES Q  + Q K    +   T SD    L+     LE  +        G  +  ++H ++ A  S      R L++ K  +   L+  L  ++ EK EA     ++ +      +   E E  +L S+L A++                     Q +E  Q  ++ ++QL Q LQE   L +E           I  K  +LEQ KE  +K ++ A++  +L      +E+E  CIICS YFIEA TL CAH+FCS+C+ EW+K+K  CP+CR+ +K K   SLVLD+C+ K+V   S   KE R+ 
Sbjct:   27 AGWLLLEDGCEVTVGRGFG--VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV--TEEDWETIYPCLSPKNDQMIEKNKELRTKRKF---SLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGK---GEVASTPSD---NLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQ--RSLQMFKVTMSRILR--LKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKE--EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY-SLVLDNCINKMVNNLSSEVKERRIV 474
The following BLAST results are available for this feature:
BLAST of TCONS_00006390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF82.365e-3128.85E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens G... [more]
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