TCONS_00006390-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00006390-protein
Unique NameTCONS_00006390-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00006390-protein ID=TCONS_00006390-protein|Name=TCONS_00006390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=591bp
MQEIENYPMVRLRKIRETSLKSDPSNFIYLSSTKPTIIGRVIADDVNTRM
LSKSTPLMISRRHATVTFENGKVFVVDHSSLNGVYIRNKRIRSGVKAEVK
IGDRVAFGCGIDKGSPPEFEYYVENAQSKHKTANPNLSASPLKRKRFFEP
PSITIIESNTAQIKEQEQKIKSLSESLQEKEKQHKNMLSQFEETQSDLLK
QLENSKLQLENERQEAELHLKGLLENQLHEQESALKSQFDMQIRDLELEK
TLVETNLQQELSKKLSEKDEAYQKELEKQKLELETTIYAKESEKSNLLSE
LRAKEQVIEKYQSVEENQKQLEQCLQELRDEISEKENQLEQQKEITKKVE
IDAKQSAMLCMEDEFSCIICSHYFIEATTLPCAHTFCSFCLWEWLKKKKN
CPVCRRKMKGKAVRSLVLDSCVEKLVETFSDAEKEARVTEQTKRETIIKK
DESSEDAEGIRELFHRIEDSDVDDTPARSNDRNNAQNRNGRRDGGYRRRS
RSRSPRNHRHRPYHDGRYNNQNNNFVNNMYPPQAQARYHQERSGGGNFHN
YFTNGFHSHLTNQYANHHNNARCFNCGGLDHIARYCPRGPR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_003653XLOC_003653Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00006390TCONS_00006390Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001878Znf_CCHC
IPR000253FHA_dom
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008984SMAD_FHA_domain
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 304..352
NoneNo IPR availableCOILSCoilCoilcoord: 156..226
NoneNo IPR availableCOILSCoilCoilcoord: 243..282
NoneNo IPR availableCOILSCoilCoilcoord: 422..442
NoneNo IPR availableGENE3D2.60.200.20coord: 14..218
e-value: 7.9E-18
score: 64.0
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 365..409
e-value: 3.2E-9
score: 36.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 434..523
NoneNo IPR availableCDDcd00060FHAcoord: 28..108
e-value: 1.21394E-13
score: 66.641
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 360..408
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 367..404
e-value: 1.2E-5
score: 34.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 367..405
score: 12.563
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 367..407
e-value: 9.88682E-11
score: 56.6852
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 572..588
e-value: 0.0044
score: 25.8
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 477..591
e-value: 1.1E-6
score: 28.3
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 573..587
e-value: 1.2E-4
score: 21.9
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 572..588
score: 9.092
IPR000253Forkhead-associated (FHA) domainSMARTSM00240FHA_2coord: 35..91
e-value: 1.6E-8
score: 44.3
IPR000253Forkhead-associated (FHA) domainPFAMPF00498FHAcoord: 37..108
e-value: 2.8E-12
score: 46.7
IPR000253Forkhead-associated (FHA) domainPROSITEPS50006FHA_DOMAINcoord: 36..91
score: 12.31
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 350..458
e-value: 5.4E-19
score: 67.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 382..391
IPR008984SMAD/FHA domainSUPERFAMILY49879SMAD/FHA domaincoord: 21..128

Blast
[Close]
BLAST of TCONS_00006390-protein vs. Swiss-Prot (Human)
Match: RNF8 (E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens GN=RNF8 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.521e-31
Identity = 133/468 (28.42%), Postives = 218/468 (46.58%), Query Frame = 0 
Query:   25 SNFIYLSSTKPTIIGRVIADDVNTRMLSKSTPLMISRRHATVTFE-NGKVFVVDHSSLNGVYIRNKRIRSGVKAEVKIGDRVAFGCGIDKGSPPEFEYYVENAQSKHKTANPNLSA---------SPLKRKRFFEPPSITIIESNTAQIKEQ-EQKIKSLS-ESLQEKEKQHKNMLSQFEETQSDLLKQLENSKLQLENERQEAELHLKGLLE-NQLHEQESALKSQFDMQIRDLELEKTLVETNLQQELSKKLSEKDEAYQK--------------ELEKQKLELETTIYAKESEKSNLLSELRAKEQ-------VIEKYQSVEENQKQLEQCLQE---LRDE-----------ISEKENQLEQQKEITKKVEIDAKQSAML-----CMEDEFSCIICSHYFIEATTLPCAHTFCSFCLWEWLKKKKNCPVCRRKMKGKAVRSLVLDSCVEKLVETFSDAEKEARVT 439
            + ++ L       +GR     V  +++SK  PLMISR H  +     G+  ++D+ SLNGV++   R+       +  GD +  G  ++     E+EY V   +   +T  P LS            L+ KR F   S+  +    A+     + KI  +S ES Q  + Q K    +   T SD    L+     LE  +        G  +  ++H ++ A  S      R L++ K  +   L+  L  ++ EK EA                 ++E++  +L++ + A+++++   + +L    Q        +E  Q  ++ ++QL Q LQE   L +E           I  K  +LEQ KE  +K ++ A++  +L      +E+E  CIICS YFIEA TL CAH+FCS+C+ EW+K+K  CP+CR+ +K K   SLVLD+C+ K+V   S   KE R+ 
Sbjct:   27 AGWLLLEDGCEVTVGRGFG--VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEV--TEEDWETIYPCLSPKNDQMIEKNKELRTKRKF---SLDELAGPGAEGPSNLKSKINKVSCESGQPVKSQGK---GEVASTPSD---NLDPKLTALEPSKTTGAPIYPGFPKVTEVHHEQKASNSSASQ--RSLQMFKVTMSRILR--LKIQMQEKHEAVMNVKKQTQKGNSKKVVQMEQELQDLQSQLCAEQAQQQARVEQLEKTFQEEEQHLQGLEIAQGEKDLKQQLAQALQEHWALMEELNRSKKDFEAIIQAKNKELEQTKE--EKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY-SLVLDNCINKMVNNLSSEVKERRIV 474
The following BLAST results are available for this feature:
BLAST of TCONS_00006390-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNF85.521e-3128.42E3 ubiquitin-protein ligase RNF8 OS=Homo sapiens G... [more]
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