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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006387 ID=TCONS_00006387|Name=TCONS_00006387|organism=Clytia hemisphaerica|type=transcript|length=1596bp
AGATGAGGAACATTTCAAGTCCAAGCTTAGCGAGTTTGAACGAAGAGCCT
TATCAAGataaattgacgtcaaatatcttTTTGGTCGATAACGAAGTCAT
TGCAATAAATCTATCGGTGGCCAAATCTCTGtcaaagtgtaaaaaacaac
ttaaatAGAGTGGAGAGAATGGCGGAAAGTCACAAACTAAAGAAGTCTTT
GAACGTCGTCCACAGTGATGAAATATGGAAGGATCACATCGGTCGCGAGT
TGCTCGCACAAAGAAATTGGCCGCAGAAATGGGGATTCCTCTCCGATATC
TATAAAGAGCTAGAACAAGAAACAAAAGAAGATAGCACAAGCCataatca
taaaataaaaacaccgaaagaagaaacgaaaaaatcctATCCCCGTACCG
ACGCTCAAATGATCGGGTGGAAGTCCGCCGTTGCCAGACGTAACCCGTAC
GGCGTGCCGGAGGCTCACGCTCGTGGCAAATGTGAcatcttgaaaacttt
tgagtGGCCTCAAGAGGGCCAGTAAATCTTAATTGTCTGATCCAATCTTT
GTTTATATGTCATTTGTAAATACTATTAATAAAGTCATATATGGTATCGA
AAACTGCAgtatttgaatttctttttcccaaagaaaatagaaaattgttc
tttAACAGGTATAATGCATGTATAAAgttttttaaacaaataaaggaaaa
atatttacatatttttgcatattaatcaaaaatttaaaaaaaattctaga
aaatttCTAAACGATTTTTCAAAAGCTAAAGCAACAGTTATTTTTCACAA
ATCTGGCATCTCCTTTCTGTGTGAAAGGGAAAACAGCTTGCCTTCCAGCT
CGGATAAAATTCTCAGAAACTAAGTTTGCAATTGACTGAGGGACGACGGA
CCTAAAGCTCTGTCCAGCCCAGTTCCAAATAAATTCTGTAATTTAATGCC
AGGGAATTTAAACGAACAAGGGATACATCTTTCCACCTGCCAGGTAGTGA
TGGAAAATTATTCATACTCTTTAGGAGTCAGTCATCCTTTCCTCATCTAC
TGATCAGTTTGTTTAAGGAGATTGAGCAAAGTCTCTCGTCGGCACATTTT
TCCTCCTTACTCTTTTATGAATAACCTGTCCACTCTTATTGTCACCCTTA
GTAGCTGCTGCAGATTTACTCTTTGGTGGTCCGACAGCTTTTGGAGGTTT
CTTAGGAGCTTCCTCTGGTGTGGGTGGATCAGGTTTTGACTTCTTGGCAG
CAACATTTGATGAAGCTTTAGGCCGGCCTCTCTTGACAGGCGGTGGTGGT
TTATTCTCATCTTCTGATACAGCGGCTGCAATACCTCTGGCTGAACGTCT
CTTTTTGGGGCTTGCTGATGGAGACTAAAGAAAAAgcaacaagctagatg
ctgaatggacctacttgacgatgaaagttagatagcaatgcaaggagaaa
aatgaaaaaaatcagtcagaaaatatagtgtTTAgggaaaatgcataacg
caataaattcatcattgattgttgatgggggagagggaagggttgtaggg
aaaaaaatagatagaaagttctggtcgcaaaagtcagttttattga Run BLAST on NCBI protein sequence of TCONS_00006387-protein >TCONS_00006387-protein ID=TCONS_00006387-protein|Name=TCONS_00006387-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MAESHKLKKSLNVVHSDEIWKDHIGRELLAQRNWPQKWGFLSDIYKELEQ
ETKEDSTSHNHKIKTPKEETKKSYPRTDAQMIGWKSAVARRNPYGVPEAH
ARGKCDILKTFEWPQEGQ Run BLAST on NCBI transcript from alignment at sc0000067:113787..117551+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006387 ID=TCONS_00006387|Name=TCONS_00006387|organism=Clytia hemisphaerica|type=transcript|length=3765bp|location=Sequence derived from alignment at sc0000067:113787..117551+ (Clytia hemisphaerica)
AGATGAGGAACATTTCAAGTCCAAGCTTAGCGAGTTTGAACGAAGAGCCT
TATCAAGGTAAGTTGAATTTAATAGAATtaattgttttcttcttttcaga
ACCTTTATGCTTCACAATTTTCTTTGTCACCTTTAGAGCCTTTAGAGTGG
AGGGGGTGGTAAAATCAtaaatttataaagcccgatgggctagatgtcgt
gctttaagacATCGCaggtaaaaaaagtgaatatcggaaaaaatattgtt
gttgttgttttcgaaaacccgcgaaccttctgattggtcaagcgctgaaa
ttctattgtattgtCACGCGACCAGACGCGatctaggtaggatttcctac
ctaaacACGGCACATTTTTCAGTTAAAGTTTGACATCTAGCCCtacgggc
tttataaatctatgggttAAATGCTAGTTATTATGAAATGAAGTTTCTCA
ATTTTACTAAGAAGTTTCCATAAGCAAAAAATCGTCTTACCTTAATATGT
TTGAAGTCAGTCACTCCCAATTTAACCAAATTATCAGCATCAATCCAAAT
CAGCTTTTGGCCACCGACAAAATTGCTGATAAAGCAATCTTCATATTGGG
GATAGTTTAATGTGTTCTTGACCCAGTTGCCAACATCTTGAGGTGACCAG
TGAAGCATTAATGGGATGCCACTTTTATCAAAAGTTGGTTTGTATGGTTT
GCCCATAACTATTCACACTTGCTCAGACAAGATGTTATATATATACCGAG
ACTTCAAAAAATGTAAGCGCACTGACAAGAatcgaaaataagaaaatgac
gtcaaataCATGATTAAATGGTtgctttttatcaaaaaattgattttgta
ggAGAAAGAAAGGATATTTTGATGAATATGTTTTCCTCTAagatttttag
agttttaaaattttgtttcattttagataaattgacgtcaaatatcttTT
TGGTCGATAACGAAGTCATTGCAATAAATCTATCGGTGGCCAAATCTCTG
tcaaagtgtaaaaaacaacttaaatAGAGTGGAGAGAATGGCGGAAAGTC
ACAAACTAAAGAAGTCTTTGAACGTCGTCCACAGTGATGAAATATGGTGA
GTATATTATACAACGAAGTATATtctcgaagggctagaatcgaatctcct
agTTGCGCAGCCTAGCGCGgatcgcctggtttttacacaaatgacagatt
gaaactaaaatttacacctaaatttcgaaaaagatatcactcgaaaacaa
aagaatcgctagattcaatccgtcgtcaaaaatacggcgcatattttaag
gcttcactttttcttgccatTGATATTATACTGAAAAGTATTTTTTACCA
AGCGGTAGGTTCATTACATAATTACTTCTCACGCCTTTACGCAGACCACT
TGGATAACTTTGTGGGTTTATATAGTGTCAGTTAGACCAAATTAATTTAC
GACCTTCATTAGGTCTGTCAGGAAGCTTCTACACGCGAAACTGAATTTCG
TGTGGAAGTTTACGAAAACGATACATTATGCGAAGCTAAGCTCTACCACA
TGTAATAAATGTatcaaatcttcgaaaaaacgaTGCCCACTTTTTGCTTC
GTCGGAAAGATTTGGTTACATTAAATTGAATTCTTTAAAATTCttgttaa
aaattgaacttaaaaaaagtactctctaattcgatttctgatttctttat
gagagtttcttgttaacTGTGATTTTCAATATTATCTAATAATTGAGCGT
ATTGaaaaggcgctgtggtatagtggtcgttgaccttggttgctgcacag
gcgactgaggttcgattcccactcgtagcggttcacttggcaaaggaatg
aaccttcgcccgggtcaacccatgccatgtaaggagaattgggtagtcag
tccaaggtatTGACGGGGCGCTCaatgaaagcgtctatagttgcgaaaat
aggcctcaaagcctcctgcaactcaaccaaatagaaatagaaaattaatt
gtagaacgtcgaattaaagagcgtTAACTTTATGAATTAATTTAATGTAG
GCCTGTTTTAACGTCATACAGGAAAAGCATTACTAACcttttttattctt
cttgtTTTCCAGGAAGGATCACATCGGTCGCGAGTTGCTCGCACAAAGAA
ATTGGCCGCAGAAATGGGGATTCCTCTCCGATATCTATAAAGAGGTAAAC
AAGACTCGACATTAATTTATACCTTGATTCCCCAGCTTTTTTTCGTTCGt
taaaatttaaagttcggaCGAGAAAGATGATTTTAATCTTTCCACTTTAC
GATATTTCAATCTTTTTGAGTGGTTCAAAGTCGACGCAAGCCatgtcaaa
aatatcaaatgatcTTTCCCATTTCCATACCGAAGAGTAAAATAAACACT
CACGTCAGAACCAATACAATACCACAATTCcaattcattcattcaattca
ttttatttaatttttcattttgttacaGCTAGAACAAGAAACAAAAGAAG
ATAGCACAAGCCataatcataaaataaaaacaccgaaagaagaaacgaaa
aaatcctATCCCCGTACCGACGCTCAAATGATCGGGTGGAAGTCCGCCGT
TGCCAGACGTAACCCGTACGGCGTGCCGGAGGCTCACGCTCGTGGCAAAT
GTGAcatcttgaaaacttttgagtGGCCTCAAGAGGGCCAGTAAATCTTA
ATTGTCTGATCCAATCTTTGTTTATATGTCATTTGTAAATACTATTAATA
AAGTCATATATGGTATCGAAAACTGCAgtatttgaatttctttttcccaa
agaaaatagaaaattgttctttAACAGGTATAATGCATGTATAAAgtttt
ttaaacaaataaaggaaaaatatttacatatttttgcatattaatcaaaa
atttaaaaaaaattctagaaaatttCTAAACGATTTTTCAAAAGCTAAAG
CAACAGTTATTTTTCACAAATCTGGCATCTCCTTTCTGTGTGAAAGGGAA
AACAGCTTGCCTTCCAGCTCGGATAAAATTCTCAGAAACTAAGTTTGCAA
TTGACTGAGGGACGACGGACCTAAAGCTCTGTCCAGCCCAGTTCCAAATA
AATTCTGTAATTTAATGCCAGGGAATTTAAACGAACAAGGGATACATCTT
TCCACCTGCCAGGTAGTGATGGAAAATTATTCATACTCTTTAGGAGTCAG
TCATCCTTTCCTCATCTACTGATCAGTTTGTTTAAGGAGATTGAGCAAAG
TCTCTCGTCGGCACATTTTTCCTCCTTACTCTTTTATGAATAACCTGTCC
ACTCTTATTGTCACCCTTAGTAGCTGCTGCAGATTTACTCTTTGGTGGTC
CGACAGCTTTTGGAGGTTTCTTAGGAGCTTCCTCTGGTGTGGGTGGATCA
GGTTTTGACTTCTTGGCAGCAACATTTGATGAAGCTTTAGGCCGGCCTCT
CTTGACAGGCGGTGGTGGTTTATTCTCATCTTCTGATACAGCGGCTGCAA
TACCTCTGGCTGAACGTCTCTTTTTGGGGCTTGCTGATGGAGACTAAAGA
AAAAgcaacaagctagatgctgaatggacctacttgacgatgaaagttag
atagcaatgcaaggagaaaaatgaaaaaaatcagtcagaaaatatagtgt
TTAgggaaaatgcataacgcaataaattcatcattgattgttgatggggg
agagggaagggttgtagggaaaaaaatagatagaaagttctggtcgcaaa
agtcagttttattga Coding sequence (CDS) from alignment at sc0000067:113787..117551+ >TCONS_00006387 ID=TCONS_00006387|Name=TCONS_00006387|organism=Clytia hemisphaerica|type=CDS|length=1071bp|location=Sequence derived from alignment at sc0000067:113787..117551+ (Clytia hemisphaerica)
ATGGCGGAAAGTCACAAACTAAAGAAGTCTTTGAACGTCGTCCACAGTGA
TGAAATATGGAAGGATCACATCGGTCGCGAGTTGCTCGCACAAAGAAATT
GGCCGCAGAAATGGGGATTCCTCTCCGATATCTATAAAGAGCTAGAACAA
GAAACAAAAGAAGATAGCACAAGCCataatcataaaataaaaacaccgaa
agaagaaacgaaaaaatcctATCCCCGTACCGACGCTCAAATGATCGGGT
GGAAGTCCGCCGTTGCCAGACGTAACCCGTACGGCGTGCCGGAGGCTCAC
GCTCGTGGCAAATGTGAcatcttgaaaacttttgagtGGCCTCAAGAGGG
CCAGTAAATGGCGGAAAGTCACAAACTAAAGAAGTCTTTGAACGTCGTCC
ACAGTGATGAAATATGGAAGGATCACATCGGTCGCGAGTTGCTCGCACAA
AGAAATTGGCCGCAGAAATGGGGATTCCTCTCCGATATCTATAAAGAGCT
AGAACAAGAAACAAAAGAAGATAGCACAAGCCataatcataaaataaaaa
caccgaaagaagaaacgaaaaaatcctATCCCCGTACCGACGCTCAAATG
ATCGGGTGGAAGTCCGCCGTTGCCAGACGTAACCCGTACGGCGTGCCGGA
GGCTCACGCTCGTGGCAAATGTGAcatcttgaaaacttttgagtGGCCTC
AAGAGGGCCAGTAAATGGCGGAAAGTCACAAACTAAAGAAGTCTTTGAAC
GTCGTCCACAGTGATGAAATATGGAAGGATCACATCGGTCGCGAGTTGCT
CGCACAAAGAAATTGGCCGCAGAAATGGGGATTCCTCTCCGATATCTATA
AAGAGCTAGAACAAGAAACAAAAGAAGATAGCACAAGCCataatcataaa
ataaaaacaccgaaagaagaaacgaaaaaatcctATCCCCGTACCGACGC
TCAAATGATCGGGTGGAAGTCCGCCGTTGCCAGACGTAACCCGTACGGCG
TGCCGGAGGCTCACGCTCGTGGCAAATGTGAcatcttgaaaacttttgag
tGGCCTCAAGAGGGCCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006387-exon-sc0000067-1491911889:113787..113843 | TCONS_00006387-exon-sc0000067-1491911889:113787..113843 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1510915933:113787..113843 | TCONS_00006387-exon-sc0000067-1510915933:113787..113843 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1575043694:113787..113843 | TCONS_00006387-exon-sc0000067-1575043694:113787..113843 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1491911889:114713..114882 | TCONS_00006387-exon-sc0000067-1491911889:114713..114882 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1510915933:114713..114882 | TCONS_00006387-exon-sc0000067-1510915933:114713..114882 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1575043694:114713..114882 | TCONS_00006387-exon-sc0000067-1575043694:114713..114882 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1491911889:115899..115980 | TCONS_00006387-exon-sc0000067-1491911889:115899..115980 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1510915933:115899..115980 | TCONS_00006387-exon-sc0000067-1510915933:115899..115980 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1575043694:115899..115980 | TCONS_00006387-exon-sc0000067-1575043694:115899..115980 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1491911889:116265..117551 | TCONS_00006387-exon-sc0000067-1491911889:116265..117551 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1510915933:116265..117551 | TCONS_00006387-exon-sc0000067-1510915933:116265..117551 | Clytia hemisphaerica | exon |
| TCONS_00006387-exon-sc0000067-1575043694:116265..117551 | TCONS_00006387-exon-sc0000067-1575043694:116265..117551 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:113787..117551 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020339 | Uncharacterised_C20orf85 |
Blast
The following BLAST results are available for this feature:
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