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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006382 ID=TCONS_00006382|Name=TCONS_00006382|organism=Clytia hemisphaerica|type=transcript|length=7274bpRun BLAST on NCBI transcript from alignment at sc0000067:99216..106489+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006382 ID=TCONS_00006382|Name=TCONS_00006382|organism=Clytia hemisphaerica|type=transcript|length=7274bp|location=Sequence derived from alignment at sc0000067:99216..106489+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006382 vs. Swiss-Prot (Human)
Match: HS71L (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2) HSP 1 Score: 554.288 bits (1427), Expect = 6.437e-175 Identity = 275/405 (67.90%), Postives = 342/405 (84.44%), Query Frame = 1
Query: 3025 NLFLSFYLQEIKRKHKKDITSNKRAIRRLRTACEKAKRTLSSTAQASIEIDSLFDGVDFFTSISRARFEELNSEMFKKTLEPVQKALADAKLDKSQIHEIVLVGGSTRIPKIRKMLQDYFNGKSLCNSVNPDEXXXXXXXXXXXILTGSKDDAVKDLLLIDVAPLSLGIETAGGVMTSLIKRNTKIPCNQAQTFTTYSDNQPGVSIQVFEGERSMTKDNHRLGEFELSGIAPAPRGVPQIEVTFDIDANGILNVTAKDKSTGKDAHITI--NKGRLSKDEVERMVQDAEKHRAEDEQQKERVDARNALEAYAFQMKSTVDDSNIKKKLSEGDQETILKKCQEVLQWIDGNQLASKEEFEHQKSELENVCRPIMTKLHQGGATG-AGQSNMSQG----GPTVEEVD 4218
N +S +++E KRKHKKDI+ NKRA+RRLRTACE+AKRTLSS+ QA++EIDSL++G+DF+TSI+RARFEEL +++F+ TLEPV+KAL DAK+DK++IH+IVLVGGSTRIPK++++LQDYFNG+ L S+NPDEAVAYGAA+QAAIL G K + V+DLLL+DVAPLSLG+ETAGGVMT+LIKRN+ IP Q Q FTTYSDNQPGV IQV+EGER+MTKDN+ LG F+L+GI PAPRGVPQIEVTFDIDANGILNVTA DKSTGK ITI +KGRLSK+E+ERMV DAEK++AEDE Q+E++ A+NALE+YAF MKS V D +K K+SE D+ IL KC E+L W++ NQLA K+EF+H++ ELE +C PI+TKL+QGG TG A + G GPT+EEVD
Sbjct: 237 NRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCADLFRGTLEPVEKALRDAKMDKAKIHDIVLVGGSTRIPKVQRLLQDYFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSEKVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQIFTTYSDNQPGVLIQVYEGERAMTKDNNLLGRFDLTGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKVNKITITNDKGRLSKEEIERMVLDAEKYKAEDEVQREKIAAKNALESYAFNMKSVVSDEGLKGKISESDKNKILDKCNELLSWLEVNQLAEKDEFDHKRKELEQMCNPIITKLYQGGCTGPACGTGYVPGRPATGPTIEEVD 641 HSP 2 Score: 234.958 bits (598), Expect = 3.336e-64 Identity = 109/138 (78.99%), Postives = 124/138 (89.86%), Query Frame = 1
Query: 1522 VDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFV 1935
V +KGE K + PEEISSMVL+K+K+TAE +LG VT+AVITVPAYFNDSQRQATKDAGVIAGLNVLR++NEPTAAAIAYGLDK ER+VLIFDLGGGTFDVS+L ID+G+FEVK+T GDTHLGGEDFDNR+V HFV
Sbjct: 107 VSYKGENKAFYPEEISSMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGGQGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFV 244 HSP 3 Score: 229.95 bits (585), Expect = 1.598e-62 Identity = 109/138 (78.99%), Postives = 124/138 (89.86%), Query Frame = 2
Query: 683 VDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFV 1096
V +KGE K + PEEISSMVL+K+K+TAE +LG VT+AVITVPAYFNDSQRQATKDAGVIAGLNVLR++NEPTAAAIAYGLDK ER+VLIFDLGGGTFDVS+L ID+G+FEVK+T GDTHLGGEDFDNR+V HFV
Sbjct: 107 VSYKGENKAFYPEEISSMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGGQGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFV 244 HSP 4 Score: 229.565 bits (584), Expect = 2.419e-62 Identity = 109/138 (78.99%), Postives = 124/138 (89.86%), Query Frame = 3
Query: 2298 VDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFV 2711
V +KGE K + PEEISSMVL+K+K+TAE +LG VT+AVITVPAYFNDSQRQATKDAGVIAGLNVLR++NEPTAAAIAYGLDK ER+VLIFDLGGGTFDVS+L ID+G+FEVK+T GDTHLGGEDFDNR+V HFV
Sbjct: 107 VSYKGENKAFYPEEISSMVLTKLKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGGQGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFV 244 HSP 5 Score: 177.563 bits (449), Expect = 1.990e-45 Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 3
Query: 180 TKMGKAVGIDLGTTYSCVGIFQNGKVDIIANDAGNRTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVCIFSQSYSF 521
T G A+GIDLGTTYSCVG+FQ+GKV+IIAND GNRTTPSYVAF D ERLIGDAAKNQ AMNP NT+FDAKRLIGR F D VQ+D+KLWPF+V+N+ GKPK+ V ++ +F
Sbjct: 3 TAKGIAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAF 116 HSP 6 Score: 125.561 bits (314), Expect = 5.405e-29 Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 2
Query: 1118 GNRTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVCIFSQSYSF 1360
GNRTTPSYVAF D ERLIGDAAKNQ AMNP NT+FDAKRLIGR F D VQ+D+KLWPF+V+N+ GKPK+ V ++ +F
Sbjct: 36 GNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRKFNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAF 116 The following BLAST results are available for this feature:
BLAST of TCONS_00006382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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