|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006381 ID=TCONS_00006381|Name=TCONS_00006381|organism=Clytia hemisphaerica|type=transcript|length=2437bp
atatGGCAGACTTGAACAAAACCGAAAGTACGAGAATATTCTGGGTCGCA
GCAAGATTTCAACCAGAAACACAGCGAATTCGATGATTCTGGAATTTTTC
CAAACAATATATAAAGAGAGTAAATCTGAGAAATGTCATATTCAAACAAG
AGTTAAAAGTTGACAACAACGAGAAAAATAAAGACTTTAGAATTCACGAG
AAGAAAAACATCACAAAAATGGGAAAAGCAGTAGGAATCGATCTTGGAAC
AACTTATTCATGTGTTGGGATCTTTCAAAATGGAAAAGTTGATATCATCG
CGAATGATGCTGGCAACAGAACAACGCCAAGTTATGTTGCGTTCAATGAC
GTTGAGCGTCTCATTGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCC
TACGAACACCATTTTCGACGCAAAACGATTGATCGGTAGAAATTTTGTGG
ATCAAACAGTCCAATCGGATATAAAGTTATGGCCATTTAAAGTTGTAAAC
AAAGCTGGAAAACCAAAGATTGAGGTCGATTTCAAAGGGGAACGAAAGAT
TTATACTCCAGAAGAAATATCATCAATGgttttatcaaaaatgaaagata
CTGCTGAAAATTATCTGGGAGAGAAAGTTACAGATGCAGTCATTACAGTC
CCAGCATATTTCAACGACAGCCAACGACAAGCCACAAAAGACGCAGGTGT
GATTGCTGGTTTGAACGTCTTGCGTGTTGTTAATGAACCAACAGCAGCAG
CAATTGCTTACGGCCTTGACAAGTTCACTGATGAcgaaagaaatgttttg
attttcgatCTTGGAGGTGGCACCTTTGATGTCTCAGTACTGGCAATTGA
TAATGGAGTCTTTGAAGTGAAATCAACCCGTGGCGACACGCACCTTGGTG
GCGAAGACTTTGACAACAGAATGGTGGAACATTTCGTAGCCGAGATCAAA
CGAAAACACAAGAAAGATATCACATCCAACAAACGAGCTATCAGACGTTT
AAGAACAGCTTGCGAAAAAGCCAAACGAACTCTCTCTTCGACAGCTCAAG
CTTCTATCGAGATCGATTCCCTTTTCGACGGAGTTGATTTCTTCACATCT
ATCTCCAGAGCAAGGTTTGAGGAGCTAAACTCAGAGATGTTCAAGAAGAC
GTTGGAACCGGTACAAAAAGCCCTTGCAGACGCCAAGTTAGATAAATCAC
AAATTCATGAAATCGTTTTGGTTGGAGGATCAACAAGAATCCCGAAAATC
CGAAAGATGTTACAAGATTATTTCAACGGGAAATCACTCTGTAATTCTGT
CAACCCAGATGAAGCTGTTGCATATGGAGCTGCCATCCAAGCTGCCATCT
TGACTGGCTCAAAAGACGATGCTGTTAAAGATCTACTATTGATTGACGTG
GCTCCTTTATCACTTGGTATTGAGACAGCTGGAGgagtgatgacgtcact
catcaaaCGAAACACCAAAATCCCATGCAATCAAGCTCAAACCTTCACAA
CGTACTCCGACAATCAACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAA
CGAAGTATGACCAAAGATAACCATCGACTTGGAGAATTTGAACTTTCTGG
AATCGCACCAGCCCCAAGAGGTGTACCGCAGATCGAAGTTACTTTCGATA
TCGATGCTAATGGTATTTTAAATGTGACAGCCAAAGACAAGAGCACTGGC
AAAGATGCACACATTACCATCAATAAAGGTCGATTATCCAAGGACGAGGT
TGAGAGGATGGTACAGGATGCTGAGAAACATCGTGCGGAAGACGAGCAGC
AAAAGGAACGAGTGGATGCAAGAAACGCACTTGAAGCCTACGCCTTCCAA
ATGAAAAGCACTGTTGATGACTCAAACATCAAAAAGAAGTTAAGTGAAGG
TGACCAAGAGACAATCCTCAAGAAATGCCAAGAAGTTTTGCAATGGATTG
ATGGCAATCAGCTGGCATCAAAGGAGGAATTCGAACACCAGAAAAGCGAA
TTGGAGAACGTTTGTCGACCCATCATGACCAAATTGCATCAAGGTGGAGC
AACAGGAGCTGGCCAATCCAACATGTCTCAAGGTGGACCAACTGTCGAAG
AAGTTGACTAAACAAAGTATATTCAAGAGAACATTATACCTGAGTATacc
tataaaaaagaaaaattatgatAATATCGCTGTTAAAAGAAACCATTGTA
GCAGTAGGAAACCATTATATTTatgtaaattttattgtttGATTTAAAGA
CATTGTATATTTCAAAAGAACtttgttgtaaaaaaaaatgaagttagtCT
TCATTCAACCATTATTTAActcaaaagatttgaaaaaagaacAGTCGTAA
AAGAACAagccattttgaaataaatattcATCTGTATTCTTATTGACCGT
AAATTTCATACACCCTTccggaaaaattggccaaaat Run BLAST on NCBI transcript from alignment at sc0000067:99183..103762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006381 ID=TCONS_00006381|Name=TCONS_00006381|organism=Clytia hemisphaerica|type=transcript|length=4580bp|location=Sequence derived from alignment at sc0000067:99183..103762+ (Clytia hemisphaerica)
atatGGCAGACTTGAACAAAACCGAAAGTACGAGAATATTCTGGGTCGCA
GCAAGATTTCAACCAGAAACACAGCGAATTCGATGATTCTGGAATTTTTC
CAAACAATATATAAAGAGAGTAAATCTGAGAAATGTCATATTCAAACAAG
AGTTAAAAGTTGACAACAACGAGAAAAATAAAGACTTTAGAATTCACGAG
AAGAAAAACATCACAAAAATGGGAAAAGCAGTAGGAATCGATCTTGGAAC
AACTTATTCATGTGTTGGGATCTTTCAAAATGGAAAAGTTGATATCATCG
CGAATGATGCTGGCAACAGAACAACGCCAAGTTATGTTGCGTTCAATGAC
GTTGAGCGTCTCATTGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCC
TACGAACACCATTTTCGACGCAAAACGATTGATCGGTAGAAATTTTGTGG
ATCAAACAGTCCAATCGGATATAAAGTTATGGCCATTTAAAGTTGTAAAC
AAAGCTGGAAAACCAAAGATTGAGGTATGTATTTTCAGTCAGTCTTATTC
TTTTTGTTAACTCTAATAGCTTATTGAAAAGCAATCAGAACTTGCCATCA
TCAGTATCCTATAATGTGTTATTTTCTTTATTACTCAATGtttttatttt
ttgttgcaCGTCAGTTGTATACAATAAATTGACAtttaatttcatatttc
atattttcatttcaGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCC
AGAAGAAATATCATCAATGgttttatcaaaaatgaaagataCTGCTGAAA
ATTATCTGGGAGAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATAT
TTCAACGACAGCCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGG
TTTGAACGTCTTGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTT
ACGGCCTTGACAAGTTCACTGATGAcgaaagaaatgttttgattttcgat
CTTGGAGGTGGCACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGT
CTTTGAAGTGAAATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACT
TTGACAACAGAATGGTGGAACATTTCGTAGCCGTAAGTCCTTCAATCATN
GGCAACAGAACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCT
CATTGGTGATGCAGCAAAAAACCAAGCTGCTATGAATCCTACTAACACCA
TTTTCGACGCAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTC
CAATCGGATATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAA
ACCAAAGATTGAGGTATGTATTTTCAGTCAGTCTTATTCTTTTTGTTAAC
TCTAATAGCTTATTGAAAAGCAATCAGAACTTGCCATCATCAGTATCCTA
TAATGTGTTATTTTCTTTATTactcaatgtttttattttttgttgcaCGT
CAGTTGTATACAATAAATTGACAtttaatttcatatttcatattttcatt
tcaGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAAATAT
CATCAATGgttttatcaaaaatgaaagataCTGCTGAAAATTATCTGGGA
GAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAACGACAG
CCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAACGTCT
TGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCTTGAC
AAGTTCACTGATGAcgaaagaaatgttttgattttcgatCTTGGAGGTGG
CACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAAGTGA
AATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAACAGA
ATGGTGGAACATTTCGTAGCCGTAAGTCCTTCAATCATAATTTTTTCATC
TCTTATTCATGTCATTAAGGAGTATAAGATAATAAATCTTTATAAATAAA
AGCATCAGCTTTGCATAAATCGAGACATTTGACAACACCGGTTAAAAAAG
TAGTGCATCGGACCTAATTTTAGATCAACATGGTATGTGAGACTTAATTA
TTTATCAAGAANTTCTTTTTGTTAACTCTAATAGCTTATTGAAAAGCAAT
CAGAACTTGCCATCATCAGTATCCTATAATGTGTTATTTTCTTTATTact
caatgtttttattttttgttgcaCGTCAGTTGTATACAATAAATTGACAt
ttaatttcatatttcatattttcatttcaGGTCGATTTCAAAGGGGAACG
AAAGATTTATACTCCAGAAGAAATATCATCAATGgttttatcaaaaatga
aagataCTGCTGAAAATTATCTGGGAGAGAAAGTTACAGATGCAGTCATT
ACAGTCCCAGCATATTTCAACGACAGCCAACGACAAGCCACAAAAGACGC
AGGTGTGATTGCTGGTTTGAACGTCTTGCGTGTTGTTAATGAACCAACAG
CAGCAGCAATTGCTTACGGCCTTGACAAGTTCACTGATGAcgaaagaaat
gttttgattttcgatCTTGGAGGTGGCACCTTTGATGTCTCAGTACTGGC
AATTGATAATGGAGTCTTTGAAGTGAAATCAACCCGTGGCGACACGCACC
TTGGTGGCGAAGACTTTGACAACAGAATGGTGGAACATTTCGTAGCCGTA
AGTCCTTCAATCATAATTTTTTCATCTCTTATTCATGTCATTAAGGAGTA
TAAGATAATAAATCTTTATAAATAAAAGCATCAGCTTTGCATAAATCGAG
ACATTTGACAACACCGGTTAAAAAAGTAGTGCATCGGACCTAATTTTAGA
TCAACATGGTATATGAGACTTAATTATTTATCAAGAAATTCTATTTTGCG
CACTTCTTGCCTACTCCACTGAATTGTGTTGGATGAGTCGACAATTCTTG
AGAATATCCATTAAGATTgactaatttttctttttctttcaagtAAGTGC
ATTGACTAATTTGTTTCTCTCTTTCTACCTTCAGGAGATCAAACGAAAAC
ACAAGAAAGATATCACATCCAACAAACGAGCTATCAGACGTTTAAGAACA
GCTTGCGAAAAAGCCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTAT
CGAGATCGATTCCCTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCA
GAGCAAGGTTTGAGGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAA
CCGGTACAAAAAGCCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCA
TGAAATCGTTTTGGTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGA
TGTTACAAGATTATTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCA
GATGAAGCTGTTGCATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGG
CTCAAAAGACGATGCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTT
TATCACTTGGTATTGAGACAGCTGGAGgagtgatgacgtcactcatcaaa
CGAAACACCAAAATCCCATGCAATCAAGCTCAAACCTTCACAACGTACTC
CGACAATCAACCCGGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTA
TGACCAAAGATAACCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCA
CCAGCCCCAAGAGGTGTACCGCAGATCGAAGTTACTTTCGATATCGATGC
TAATGGTATTTTAAATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATG
CACACATTACCATCAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGG
ATGGTACAGGATGCTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGA
ACGAGTGGATGCAAGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAA
GCACTGTTGATGACTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAA
GAGACAATCCTCAAGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAA
TCAGCTGGCATCAAAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGA
ACGTTTGTCGACCCATCATGACCAAATTGCATCAAGGTGGAGCAACAGGA
GCTGGCCAATCCAACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGA
CTAAACAAAGTATATTCAAGAGAACATTATACCTGAGTATacctataaaa
aagaaaaattatgatAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAG
GAAACCATTATATTTatgtaaattttattgtttGATTTAAAGACATTGTA
TATTTCAAAAGAACtttgttgtaaaaaaaaatgaagttagtCTTCATTCA
ACCATTATTTAActcaaaagatttgaaaaaagaacAGTCGTAAAAGAACA
agccattttgaaataaatattcATCTGTATTCTTATTGACCGTAAATTTC
ATACACCCTTccggaaaaattggccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006381-exon-sc0000067-1491911889:99183..99706 | TCONS_00006381-exon-sc0000067-1491911889:99183..99706 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1510915933:99183..99706 | TCONS_00006381-exon-sc0000067-1510915933:99183..99706 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1575043694:99183..99706 | TCONS_00006381-exon-sc0000067-1575043694:99183..99706 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1491911889:101513..101929 | TCONS_00006381-exon-sc0000067-1491911889:101513..101929 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1510915933:101513..101929 | TCONS_00006381-exon-sc0000067-1510915933:101513..101929 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1575043694:101513..101929 | TCONS_00006381-exon-sc0000067-1575043694:101513..101929 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1491911889:102267..103762 | TCONS_00006381-exon-sc0000067-1491911889:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1510915933:102267..103762 | TCONS_00006381-exon-sc0000067-1510915933:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006381-exon-sc0000067-1575043694:102267..103762 | TCONS_00006381-exon-sc0000067-1575043694:102267..103762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:99183..103762 + |
Blast
BLAST of TCONS_00006381 vs. Swiss-Prot (Human)
Match: HSP7C (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1) HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0 Identity = 456/609 (74.88%), Postives = 542/609 (89.00%), Query Frame = 3
Query: 222 GKAVGIDLGTTYSCVGIFQNGKVDIIANDAGNRTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFVAEIKRKHKKDITSNKRAIRRLRTACEKAKRTLSSTAQASIEIDSLFDGVDFFTSISRARFEELNSEMFKKTLEPVQKALADAKLDKSQIHEIVLVGGSTRIPKIRKMLQDYFNGKSLCNSVNPDEXXXXXXXXXXXILTGSKDDAVKDLLLIDVAPLSLGIETAGGVMTSLIKRNTKIPCNQAQTFTTYSDNQPGVSIQVFEGERSMTKDNHRLGEFELSGIAPAPRGVPQIEVTFDIDANGILNVTAKDKSTGKDAHITI--NKGRLSKDEVERMVQDAEKHRAEDEQQKERVDARNALEAYAFQMKSTVDDSNIKKKLSEGDQETILKKCQEVLQWIDGNQLASKEEFEHQKSELENVCRPIMTKLHQ 2042
G AVGIDLGTTYSCVG+FQ+GKV+IIAND GNRTTPSYVAF D ERLIGDAAKNQ AMNPTNT+FDAKRLIGR F D VQSD+K WPF VVN AG+PK++V++KGE K + PEE+SSMVL+KMK+ AE YLG+ VT+AV+TVPAYFNDSQRQATKDAG IAGLNVLR++NEPTAAAIAYGLDK ERNVLIFDLGGGTFDVS+L I++G+FEVKST GDTHLGGEDFDNRMV HF+AE KRKHKKDI+ NKRA+RRLRTACE+AKRTLSS+ QASIEIDSL++G+DF+TSI+RARFEELN+++F+ TL+PV+KAL DAKLDKSQIH+IVLVGGSTRIPKI+K+LQD+FNGK L S+NPDEAVAYGAA+QAAIL+G K + V+DLLL+DV PLSLGIETAGGVMT LIKRNT IP Q QTFTTYSDNQPGV IQV+EGER+MTKDN+ LG+FEL+GI PAPRGVPQIEVTFDIDANGILNV+A DKSTGK+ ITI +KGRLSK+++ERMVQ+AEK++AEDE+Q+++V ++N+LE+YAF MK+TV+D ++ K+++ D++ IL KC E++ W+D NQ A KEEFEHQ+ ELE VC PI+TKL+Q
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
The following BLAST results are available for this feature:
|
