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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006377 ID=TCONS_00006377|Name=TCONS_00006377|organism=Clytia hemisphaerica|type=transcript|length=2467bp
agATAATTTATGCAATggaaacaacaacaaatatGGCAGACTTGAACAAA
ACCGAAAGTACGAGAATATTCTGGGTCGCAGCAAGATTTCAACCAGAAAC
ACAGCGAATTCGATGATTCTGGAATTTTTCCAAACAATATATAAAGAGAG
TAAATCTGAGAAATGTCATATTCAAACAAGAGTTAAAAGTTGACAACAAC
GAGAAAAATAAAGACTTTAGAATTCACGAGAAGAAAAACATCACAAAAAT
GGGAAAAGCAGTAGGAATCGATCTTGGAACAACTTATTCATGTGTTGGGA
TCTTTCAAAATGGAAAAGTTGATATCATCGCGAATGATGCTGGCAACAGA
ACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCATTGGTGA
TGCAGCAAAAAACCAAGCTGCTATGAATCCTACGAACACCATTTTCGACG
CAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAATCGGAT
ATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACCAAAGAT
TGAGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAAATAT
CATCAATGgttttatcaaaaatgaaagataCTGCTGAAAATTATCTGGGA
GAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAACGACAG
CCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAACGTCT
TGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCTTGAC
AAGTTCACTGATGAcgaaagaaatgttttgattttcgatCTTGGAGGTGG
CACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAAGTGA
AATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAACAGA
ATGGTGGAACATTTCGTAGCCGAGATCAAACGAAAACACAAGAAAGATAT
CACATCCAACAAACGAGCTATCAGACGTTTAAGAACAGCTTGCGAAAAAG
CCAAACGAACTCTCTCTTCGACAGCTCAAGCTTCTATCGAGATCGATTCC
CTTTTCGACGGAGTTGATTTCTTCACATCTATCTCCAGAGCAAGGTTTGA
GGAGCTAAACTCAGAGATGTTCAAGAAGACGTTGGAACCGGTACAAAAAG
CCCTTGCAGACGCCAAGTTAGATAAATCACAAATTCATGAAATCGTTTTG
GTTGGAGGATCAACAAGAATCCCGAAAATCCGAAAGATGTTACAAGATTA
TTTCAACGGGAAATCACTCTGTAATTCTGTCAACCCAGATGAAGCTGTTG
CATATGGAGCTGCCATCCAAGCTGCCATCTTGACTGGCTCAAAAGACGAT
GCTGTTAAAGATCTACTATTGATTGACGTGGCTCCTTTATCACTTGGTAT
TGAGACAGCTGGAGgagtgatgacgtcactcatcaaaCGAAACACCAAAA
TCCCATGCAATCAAGCTCAAACCTTCACAACGTACTCCGACAATCAACCC
GGTGTCAGCATCCAAGTCTTTGAAGGTGAACGAAGTATGACCAAAGATAA
CCATCGACTTGGAGAATTTGAACTTTCTGGAATCGCACCAGCCCCAAGAG
GTGTACCGCAGATCGAAGTTACTTTCGATATCGATGCTAATGGTATTTTA
AATGTGACAGCCAAAGACAAGAGCACTGGCAAAGATGCACACATTACCAT
CAATAAAGGTCGATTATCCAAGGACGAGGTTGAGAGGATGGTACAGGATG
CTGAGAAACATCGTGCGGAAGACGAGCAGCAAAAGGAACGAGTGGATGCA
AGAAACGCACTTGAAGCCTACGCCTTCCAAATGAAAAGCACTGTTGATGA
CTCAAACATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAGACAATCCTCA
AGAAATGCCAAGAAGTTTTGCAATGGATTGATGGCAATCAGCTGGCATCA
AAGGAGGAATTCGAACACCAGAAAAGCGAATTGGAGAACGTTTGTCGACC
CATCATGACCAAATTGCATCAAGGTGGAGCAACAGGAGCTGGCCAATCCA
ACATGTCTCAAGGTGGACCAACTGTCGAAGAAGTTGACTAAACAAAGTAT
ATTCAAGAGAACATTATACCTGAGTATacctataaaaaagaaaaattatg
atAATATCGCTGTTAAAAGAAACCATTGTAGCAGTAGGAAACCATTATAT
TTatgtaaattttattgtttGATTTAAAGACATTGTATATTTCAAAAGAA
CtttgttgtaaaaaaaaatgaagttagtCTTCATTCAACCATTATTTAAc
tcaaaagatttgaaaaaagaacAGTCGTAAAAGAACAagccattttgaaa
taaatattcATCTGTATTCTTATTGACCGTAAATTTCATACACCCTTccg
gaaaaattggccaaaat Run BLAST on NCBI transcript from alignment at sc0000067:99153..103762+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006377 ID=TCONS_00006377|Name=TCONS_00006377|organism=Clytia hemisphaerica|type=transcript|length=4610bp|location=Sequence derived from alignment at sc0000067:99153..103762+ (Clytia hemisphaerica)
agATAATTTATGCAATggaaacaacaacaaatatGGCAGACTTGAACAAA
ACCGAAAGTACGAGAATATTCTGGGTCGCAGCAAGATTTCAACCAGAAAC
ACAGCGAATTCGATGATTCTGGAATTTTTCCAAACAATATATAAAGAGAG
TAAATCTGAGAAATGTCATATTCAAACAAGAGTTAAAAGTTGACAACAAC
GAGAAAAATAAAGACTTTAGAATTCACGAGAAGAAAAACATCACAAAAAT
GGGAAAAGCAGTAGGAATCGATCTTGGAACAACTTATTCATGTGTTGGGA
TCTTTCAAAATGGAAAAGTTGATATCATCGCGAATGATGCTGGCAACAGA
ACAACGCCAAGTTATGTTGCGTTCAATGACGTTGAGCGTCTCATTGGTGA
TGCAGCAAAAAACCAAGCTGCTATGAATCCTACGAACACCATTTTCGACG
CAAAACGATTGATCGGTAGAAATTTTGTGGATCAAACAGTCCAATCGGAT
ATAAAGTTATGGCCATTTAAAGTTGTAAACAAAGCTGGAAAACCAAAGAT
TGAGGTATGTATTTTCAGTCAGTCTTATTCTTTTTGTTAACTCTAATAGC
TTATTGAAAAGCAATCAGAACTTGCCATCATCAGTATCCTATAATGTGTT
ATTTTCTTTATTACTCAATGtttttattttttgttgcaCGTCAGTTGTAT
ACAATAAATTGACAtttaatttcatatttcatattttcatttcaGGTCGA
TTTCAAAGGGGAACGAAAGATTTATACTCCAGAAGAAATATCATCAATGg
ttttatcaaaaatgaaagataCTGCTGAAAATTATCTGGGAGAGAAAGTT
ACAGATGCAGTCATTACAGTCCCAGCATATTTCAACGACAGCCAACGACA
AGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGAACGTCTTGCGTGTTG
TTAATGAACCAACAGCAGCAGCAATTGCTTACGGCCTTGACAAGTTCACT
GATGAcgaaagaaatgttttgattttcgatCTTGGAGGTGGCACCTTTGA
TGTCTCAGTACTGGCAATTGATAATGGAGTCTTTGAAGTGAAATCAACCC
GTGGCGACACGCACCTTGGTGGCGAAGACTTTGACAACAGAATGGTGGAA
CATTTCGTAGCCGTAAGTCCTTCAATCATNGGCAACAGAACAACGCCAAG
TTATGTTGCGTTCAATGACGTTGAGCGTCTCATTGGTGATGCAGCAAAAA
ACCAAGCTGCTATGAATCCTACTAACACCATTTTCGACGCAAAACGATTG
ATCGGTAGAAATTTTGTGGATCAAACAGTCCAATCGGATATAAAGTTATG
GCCATTTAAAGTTGTAAACAAAGCTGGAAAACCAAAGATTGAGGTATGTA
TTTTCAGTCAGTCTTATTCTTTTTGTTAACTCTAATAGCTTATTGAAAAG
CAATCAGAACTTGCCATCATCAGTATCCTATAATGTGTTATTTTCTTTAT
TactcaatgtttttattttttgttgcaCGTCAGTTGTATACAATAAATTG
ACAtttaatttcatatttcatattttcatttcaGGTCGATTTCAAAGGGG
AACGAAAGATTTATACTCCAGAAGAAATATCATCAATGgttttatcaaaa
atgaaagataCTGCTGAAAATTATCTGGGAGAGAAAGTTACAGATGCAGT
CATTACAGTCCCAGCATATTTCAACGACAGCCAACGACAAGCCACAAAAG
ACGCAGGTGTGATTGCTGGTTTGAACGTCTTGCGTGTTGTTAATGAACCA
ACAGCAGCAGCAATTGCTTACGGCCTTGACAAGTTCACTGATGAcgaaag
aaatgttttgattttcgatCTTGGAGGTGGCACCTTTGATGTCTCAGTAC
TGGCAATTGATAATGGAGTCTTTGAAGTGAAATCAACCCGTGGCGACACG
CACCTTGGTGGCGAAGACTTTGACAACAGAATGGTGGAACATTTCGTAGC
CGTAAGTCCTTCAATCATAATTTTTTCATCTCTTATTCATGTCATTAAGG
AGTATAAGATAATAAATCTTTATAAATAAAAGCATCAGCTTTGCATAAAT
CGAGACATTTGACAACACCGGTTAAAAAAGTAGTGCATCGGACCTAATTT
TAGATCAACATGGTATGTGAGACTTAATTATTTATCAAGAANTTCTTTTT
GTTAACTCTAATAGCTTATTGAAAAGCAATCAGAACTTGCCATCATCAGT
ATCCTATAATGTGTTATTTTCTTTATTactcaatgtttttattttttgtt
gcaCGTCAGTTGTATACAATAAATTGACAtttaatttcatatttcatatt
ttcatttcaGGTCGATTTCAAAGGGGAACGAAAGATTTATACTCCAGAAG
AAATATCATCAATGgttttatcaaaaatgaaagataCTGCTGAAAATTAT
CTGGGAGAGAAAGTTACAGATGCAGTCATTACAGTCCCAGCATATTTCAA
CGACAGCCAACGACAAGCCACAAAAGACGCAGGTGTGATTGCTGGTTTGA
ACGTCTTGCGTGTTGTTAATGAACCAACAGCAGCAGCAATTGCTTACGGC
CTTGACAAGTTCACTGATGAcgaaagaaatgttttgattttcgatCTTGG
AGGTGGCACCTTTGATGTCTCAGTACTGGCAATTGATAATGGAGTCTTTG
AAGTGAAATCAACCCGTGGCGACACGCACCTTGGTGGCGAAGACTTTGAC
AACAGAATGGTGGAACATTTCGTAGCCGTAAGTCCTTCAATCATAATTTT
TTCATCTCTTATTCATGTCATTAAGGAGTATAAGATAATAAATCTTTATA
AATAAAAGCATCAGCTTTGCATAAATCGAGACATTTGACAACACCGGTTA
AAAAAGTAGTGCATCGGACCTAATTTTAGATCAACATGGTATATGAGACT
TAATTATTTATCAAGAAATTCTATTTTGCGCACTTCTTGCCTACTCCACT
GAATTGTGTTGGATGAGTCGACAATTCTTGAGAATATCCATTAAGATTga
ctaatttttctttttctttcaagtAAGTGCATTGACTAATTTGTTTCTCT
CTTTCTACCTTCAGGAGATCAAACGAAAACACAAGAAAGATATCACATCC
AACAAACGAGCTATCAGACGTTTAAGAACAGCTTGCGAAAAAGCCAAACG
AACTCTCTCTTCGACAGCTCAAGCTTCTATCGAGATCGATTCCCTTTTCG
ACGGAGTTGATTTCTTCACATCTATCTCCAGAGCAAGGTTTGAGGAGCTA
AACTCAGAGATGTTCAAGAAGACGTTGGAACCGGTACAAAAAGCCCTTGC
AGACGCCAAGTTAGATAAATCACAAATTCATGAAATCGTTTTGGTTGGAG
GATCAACAAGAATCCCGAAAATCCGAAAGATGTTACAAGATTATTTCAAC
GGGAAATCACTCTGTAATTCTGTCAACCCAGATGAAGCTGTTGCATATGG
AGCTGCCATCCAAGCTGCCATCTTGACTGGCTCAAAAGACGATGCTGTTA
AAGATCTACTATTGATTGACGTGGCTCCTTTATCACTTGGTATTGAGACA
GCTGGAGgagtgatgacgtcactcatcaaaCGAAACACCAAAATCCCATG
CAATCAAGCTCAAACCTTCACAACGTACTCCGACAATCAACCCGGTGTCA
GCATCCAAGTCTTTGAAGGTGAACGAAGTATGACCAAAGATAACCATCGA
CTTGGAGAATTTGAACTTTCTGGAATCGCACCAGCCCCAAGAGGTGTACC
GCAGATCGAAGTTACTTTCGATATCGATGCTAATGGTATTTTAAATGTGA
CAGCCAAAGACAAGAGCACTGGCAAAGATGCACACATTACCATCAATAAA
GGTCGATTATCCAAGGACGAGGTTGAGAGGATGGTACAGGATGCTGAGAA
ACATCGTGCGGAAGACGAGCAGCAAAAGGAACGAGTGGATGCAAGAAACG
CACTTGAAGCCTACGCCTTCCAAATGAAAAGCACTGTTGATGACTCAAAC
ATCAAAAAGAAGTTAAGTGAAGGTGACCAAGAGACAATCCTCAAGAAATG
CCAAGAAGTTTTGCAATGGATTGATGGCAATCAGCTGGCATCAAAGGAGG
AATTCGAACACCAGAAAAGCGAATTGGAGAACGTTTGTCGACCCATCATG
ACCAAATTGCATCAAGGTGGAGCAACAGGAGCTGGCCAATCCAACATGTC
TCAAGGTGGACCAACTGTCGAAGAAGTTGACTAAACAAAGTATATTCAAG
AGAACATTATACCTGAGTATacctataaaaaagaaaaattatgatAATAT
CGCTGTTAAAAGAAACCATTGTAGCAGTAGGAAACCATTATATTTatgta
aattttattgtttGATTTAAAGACATTGTATATTTCAAAAGAACtttgtt
gtaaaaaaaaatgaagttagtCTTCATTCAACCATTATTTAActcaaaag
atttgaaaaaagaacAGTCGTAAAAGAACAagccattttgaaataaatat
tcATCTGTATTCTTATTGACCGTAAATTTCATACACCCTTccggaaaaat
tggccaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006377-exon-sc0000067-1491911889:99153..99706 | TCONS_00006377-exon-sc0000067-1491911889:99153..99706 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1510915933:99153..99706 | TCONS_00006377-exon-sc0000067-1510915933:99153..99706 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1575043694:99153..99706 | TCONS_00006377-exon-sc0000067-1575043694:99153..99706 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1491911889:99898..100314 | TCONS_00006377-exon-sc0000067-1491911889:99898..100314 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1510915933:99898..100314 | TCONS_00006377-exon-sc0000067-1510915933:99898..100314 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1575043694:99898..100314 | TCONS_00006377-exon-sc0000067-1575043694:99898..100314 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1491911889:102267..103762 | TCONS_00006377-exon-sc0000067-1491911889:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1510915933:102267..103762 | TCONS_00006377-exon-sc0000067-1510915933:102267..103762 | Clytia hemisphaerica | exon |
| TCONS_00006377-exon-sc0000067-1575043694:102267..103762 | TCONS_00006377-exon-sc0000067-1575043694:102267..103762 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000067 | supercontig | sc0000067:99153..103762 + |
Blast
BLAST of TCONS_00006377 vs. Swiss-Prot (Human)
Match: HSP7C (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1) HSP 1 Score: 952.584 bits (2461), Expect = 0.000e+0 Identity = 456/609 (74.88%), Postives = 542/609 (89.00%), Query Frame = 3
Query: 252 GKAVGIDLGTTYSCVGIFQNGKVDIIANDAGNRTTPSYVAFNDVERLIGDAAKNQAAMNPTNTIFDAKRLIGRNFVDQTVQSDIKLWPFKVVNKAGKPKIEVDFKGERKIYTPEEISSMVLSKMKDTAENYLGEKVTDAVITVPAYFNDSQRQATKDAGVIAGLNVLRVVNEPTAAAIAYGLDKFTDDERNVLIFDLGGGTFDVSVLAIDNGVFEVKSTRGDTHLGGEDFDNRMVEHFVAEIKRKHKKDITSNKRAIRRLRTACEKAKRTLSSTAQASIEIDSLFDGVDFFTSISRARFEELNSEMFKKTLEPVQKALADAKLDKSQIHEIVLVGGSTRIPKIRKMLQDYFNGKSLCNSVNPDEXXXXXXXXXXXILTGSKDDAVKDLLLIDVAPLSLGIETAGGVMTSLIKRNTKIPCNQAQTFTTYSDNQPGVSIQVFEGERSMTKDNHRLGEFELSGIAPAPRGVPQIEVTFDIDANGILNVTAKDKSTGKDAHITI--NKGRLSKDEVERMVQDAEKHRAEDEQQKERVDARNALEAYAFQMKSTVDDSNIKKKLSEGDQETILKKCQEVLQWIDGNQLASKEEFEHQKSELENVCRPIMTKLHQ 2072
G AVGIDLGTTYSCVG+FQ+GKV+IIAND GNRTTPSYVAF D ERLIGDAAKNQ AMNPTNT+FDAKRLIGR F D VQSD+K WPF VVN AG+PK++V++KGE K + PEE+SSMVL+KMK+ AE YLG+ VT+AV+TVPAYFNDSQRQATKDAG IAGLNVLR++NEPTAAAIAYGLDK ERNVLIFDLGGGTFDVS+L I++G+FEVKST GDTHLGGEDFDNRMV HF+AE KRKHKKDI+ NKRA+RRLRTACE+AKRTLSS+ QASIEIDSL++G+DF+TSI+RARFEELN+++F+ TL+PV+KAL DAKLDKSQIH+IVLVGGSTRIPKI+K+LQD+FNGK L S+NPDEAVAYGAA+QAAIL+G K + V+DLLL+DV PLSLGIETAGGVMT LIKRNT IP Q QTFTTYSDNQPGV IQV+EGER+MTKDN+ LG+FEL+GI PAPRGVPQIEVTFDIDANGILNV+A DKSTGK+ ITI +KGRLSK+++ERMVQ+AEK++AEDE+Q+++V ++N+LE+YAF MK+TV+D ++ K+++ D++ IL KC E++ W+D NQ A KEEFEHQ+ ELE VC PI+TKL+Q
Sbjct: 4 GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQ 612
The following BLAST results are available for this feature:
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