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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006328 ID=TCONS_00006328|Name=TCONS_00006328|organism=Clytia hemisphaerica|type=transcript|length=1081bp
ttctttttatcttcattttaccaacgaagttttttttcaacacTCGACTT
CAAGACAGCAACAACAAACATCGCTGTTTCTTTCACCAAAAACTCAAACG
CTTAAAACTTCAACAACACAAACATGGGTGGACAAAAATTAGGATTTGCC
GAAAACTTTATGCTCAGTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGC
CGCACCTATCGAACGAGTCAAATTATTGGTTCAAAATCAAGGTGAAATGA
TAAAACAAGGAACATTGAAAGAACCATACAAAGGTGTGGTCGATTGTACC
ATCAAAACATTTCAATCTGAAGGTTTGTATCCATTCTGGCGTGGAAATTT
GGCTAACTGTATCCGATACTTCCCAACGCAAGCCTTGAATTTCGCTTTCa
aggataaaatcaaagtcttGTTCAAACAGAGTAAGGATGATGGATACATG
GTCAACTTCTCTAAAAACATTGCATCTGGTGGTGCTGCCGGAGCGATGTC
TCTATGCTTCGTTTATTCGCTGGATTACGCTCGAACCAAATTAGCTAACG
ATTTGAAATCAGCTAAAGGTGGAGAACGCCAATACAATGGATTGATCGAT
GTTTACAGTAAAACCTTGAAATCTGATGGTATCCAAGGTTTGTACCGTGG
TTTTGTCATCTCCTGTGTTGGTATCATCGCATATCGTGGATGCTACTTCG
GATTCTATGATACTTTGAAACCAATGCTCCTTGGGGATGATGCCTCCCTT
GGTGCATCCTTCATGTTAGGTTATGGTGTGACTGTCGTCTCTGGTATCAT
TTCCTATCCTGTTGATACCATCCGTCGTCGAATGATGATGACGTCCGGAA
CAGCCACCAAATACAAAGGATCCATCGATTGTACCGTACAAGTCATTAAG
AGTGAAGGCGCGGCATCTTTGTTCAAAGGTGCTGGTGCTAACATCCTCCG
TGGTGTCGCCGGAGCTGGTGTCCTCGCTGGTTTCGATAAATTTAAGGAAG
TTTATATTAGCTTCCGAAACAGTGATTAAAAACTTTGAACATATTATTTT
TGTCGAGGAAAAAATATGTATAAAGAAAtgt Run BLAST on NCBI protein sequence of TCONS_00006328-protein >TCONS_00006328-protein ID=TCONS_00006328-protein|Name=TCONS_00006328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MGGQKLGFAENFMLSGVAAAVSKTAAAPIERVKLLVQNQGEMIKQGTLKE
PYKGVVDCTIKTFQSEGLYPFWRGNLANCIRYFPTQALNFAFKDKIKVLF
KQSKDDGYMVNFSKNIASGGAAGAMSLCFVYSLDYARTKLANDLKSAKGG
ERQYNGLIDVYSKTLKSDGIQGLYRGFVISCVGIIAYRGCYFGFYDTLKP
MLLGDDASLGASFMLGYGVTVVSGIISYPVDTIRRRMMMTSGTATKYKGS
IDCTVQVIKSEGAASLFKGAGANILRGVAGAGVLAGFDKFKEVYISFRNS
D Run BLAST on NCBI transcript from alignment at sc0000066:670778..672078- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006328 ID=TCONS_00006328|Name=TCONS_00006328|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at sc0000066:670778..672078- (Clytia hemisphaerica)
TTCTTTTTATCTTCATTTTACCAACGAAGTTTTTTTTCAACACTCGACTT
CAAGACAGCAACAACAAACATCGCTGTTTCTTTCACCAAAAACTCAAACG
CTTAAAACTTCAACAACACAAACATGGGTGGACAAAAATTAGGATTTGCC
GAAAACTTTATGCTCAGTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGC
CGCACCTATCGAACGAGTCAAATTATTGGTTCAAAATCAAGGTGAAATGA
TAAAACAAGGAACATTGAAAGAACCATACAAAGGTGTGGTCGATTGTACC
ATCAAAACATTTCAATCTGAAGGTATGATTTTTCTATATTTTCTACTTTA
TTTTTGTTTTTGAAGATACATACTTTTATTGTAGCCGTGGTCTGTTTTTT
TATTTGTATCTATAACTACTTTTTAACAACATTTTATTTCACTCGCGCTG
TATTTATGTTACTTATGTGATGAAATCTTTTTTTTTTCAAGAATAGAATG
AATAAGAGTGCAATGTCTCACAAACCTATTTTCATTTCATAGGTTTGTAT
CCATTCTGGCGTGGAAATTTGGCTAACTGTATCCGATACTTCCCAACGCA
AGCCTTGAATTTCGCTTTCAAGGATAAAATCAAAGTCTTGTTCAAACAGA
GTAAGGATGATGGATACATGGTCAACTTCTCTAAAAACATTGCATCTGGT
GGTGCTGCCGGAGCGATGTCTCTATGCTTCGTTTATTCGCTGGATTACGC
TCGAACCAAATTAGCTAACGATTTGAAATCAGCTAAAGGTGGAGAACGCC
AATACAATGGATTGATCGATGTTTACAGTAAAACCTTGAAATCTGATGGT
ATCCAAGGTTTGTACCGTGGTTTTGTCATCTCCTGTGTTGGTATCATCGC
ATATCGTGGATGCTACTTCGGATTCTATGATACTTTGAAACCAATGCTCC
TTGGGGATGATGCCTCCCTTGGTGCATCCTTCATGTTAGGTTATGGTGTG
ACTGTCGTCTCTGGTATCATTTCCTATCCTGTTGATACCATCCGTCGTCG
AATGATGATGACGTCCGGAACAGCCACCAAATACAAAGGATCCATCGATT
GTACCGTACAAGTCATTAAGAGTGAAGGCGCGGCATCTTTGTTCAAAGGT
GCTGGTGCTAACATCCTCCGTGGTGTCGCCGGAGCTGGTGTCCTCGCTGG
TTTCGATAAATTTAAGGAAGTTTATATTAGCTTCCGAAACAGTGATTAAA
AACTTTGAACATATTATTTTTGTCGAGGAAAAAATATGTATAAAGAAATG
T Coding sequence (CDS) from alignment at sc0000066:670778..672078- >TCONS_00006328 ID=TCONS_00006328|Name=TCONS_00006328|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000066:670778..672078- (Clytia hemisphaerica)
GTTTGTATCCATTCTGGCGTGGAAATTTGGCTAACTGTATCCGATACTTC
CCAACGCAAGCCTTGAATTTCGCTTTCAAGGATAAAATCAAAGTCTTGTT
CAAACAGAGTAAGGATGATGGATACATGGTCAACTTCTCTAAAAACATTG
CATCTGGTGGTGCTGCCGGAGCGATGTCTCTATGCTTCGTTTATTCGCTG
GATTACGCTCGAACCAAATTAGCTAACGATTTGAAATCAGCTAAAGGTGG
AGAACGCCAATACAATGGATTGATCGATGTTTACAGTAAAACCTTGAAAT
CTGATGGTATCCAAGGTTTGTACCGTGGTTTTGTCATCTCCTGTGTTGGT
ATCATCGCATATCGTGGATGCTACTTCGGATTCTATGATACTTTGAAACC
AATGCTCCTTGGGGATGATGCCTCCCTTGGTGCATCCTTCATGTTAGGTT
ATGGTGTGACTGTCGTCTCTGGTATCATTTCCTATCCTGTTGATACCATC
CGTCGTCGAATGATGATGACGTCCGGAACAGCCACCAAATACAAAGGATC
CATCGATTGTACCGTACAAGTCATTAAGAGTGAAGGCGCGGCATCTTTGT
TCAAAGGTGCTGGTGCTAACATCCTCCGTGGTGTCGCCGGAGCTGGTGTC
CTCGCTGGTTTCGATAAATTTAAGGAAGTTTATATTAGCTTCCGAAACAG
TGATTAAATGGGTGGACAAAAATTAGGATTTGCCGAAAACTTTATGCTCA
GTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGCCGCACCTATCGAACGA
GTCAAATTATTGGTTCAAAATCAAGGTGAAATGATAAAACAAGGAACATT
GAAAGAACCATACAAAGGTGTGGTCGATTGTACCATCAAAACATTTCAAT
CTGAAGGTTTGTATCCATTCTGGCGTGGAAATTTGGCTAACTGTATCCGA
TACTTCCCAACGCAAGCCTTGAATTTCGCTTTCAAGGATAAAATCAAAGT
CTTGTTCAAACAGAGTAAGGATGATGGATACATGGTCAACTTCTCTAAAA
ACATTGCATCTGGTGGTGCTGCCGGAGCGATGTCTCTATGCTTCGTTTAT
TCGCTGGATTACGCTCGAACCAAATTAGCTAACGATTTGAAATCAGCTAA
AGGTGGAGAACGCCAATACAATGGATTGATCGATGTTTACAGTAAAACCT
TGAAATCTGATGGTATCCAAGGTTTGTACCGTGGTTTTGTCATCTCCTGT
GTTGGTATCATCGCATATCGTGGATGCTACTTCGGATTCTATGATACTTT
GAAACCAATGCTCCTTGGGGATGATGCCTCCCTTGGTGCATCCTTCATGT
TAGGTTATGGTGTGACTGTCGTCTCTGGTATCATTTCCTATCCTGTTGAT
ACCATCCGTCGTCGAATGATGATGACGTCCGGAACAGCCACCAAATACAA
AGGATCCATCGATTGTACCGTACAAGTCATTAAGAGTGAAGGCGCGGCAT
CTTTGTTCAAAGGTGCTGGTGCTAACATCCTCCGTGGTGTCGCCGGAGCT
GGTGTCCTCGCTGGTTTCGATAAATTTAAGGAAGTTTATATTAGCTTCCG
AAACAGTGATTAAATGGGTGGACAAAAATTAGGATTTGCCGAAAACTTTA
TGCTCAGTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGCCGCACCTATC
GAACGAGTCAAATTATTGGTTCAAAATCAAGGTGAAATGATAAAACAAGG
AACATTGAAAGAACCATACAAAGGTGTGGTCGATTGTACCATCAAAACAT
TTCAATCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00006328-exon-sc0000066-1575043694:671757..672078 | TCONS_00006328-exon-sc0000066-1575043694:671757..672078 | Clytia hemisphaerica | exon |
| TCONS_00006328-exon-sc0000066-1575043694:670778..671536 | TCONS_00006328-exon-sc0000066-1575043694:670778..671536 | Clytia hemisphaerica | exon |
| TCONS_00006328-exon-sc0000066-1510915933:671757..672078 | TCONS_00006328-exon-sc0000066-1510915933:671757..672078 | Clytia hemisphaerica | exon |
| TCONS_00006328-exon-sc0000066-1510915933:670778..671536 | TCONS_00006328-exon-sc0000066-1510915933:670778..671536 | Clytia hemisphaerica | exon |
| TCONS_00006328-exon-sc0000066-1491911889:671757..672078 | TCONS_00006328-exon-sc0000066-1491911889:671757..672078 | Clytia hemisphaerica | exon |
| TCONS_00006328-exon-sc0000066-1491911889:670778..671536 | TCONS_00006328-exon-sc0000066-1491911889:670778..671536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000066 | supercontig | sc0000066:670778..672078 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
| GO:0006810 | transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005743 | mitochondrial inner membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0005743 |
mitochondrial inner membrane |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00006328 vs. Swiss-Prot (Human)
Match: ADT3 (ADP/ATP translocase 3 OS=Homo sapiens GN=SLC25A6 PE=1 SV=4) HSP 1 Score: 268.47 bits (685), Expect = 4.668e-87 Identity = 156/299 (52.17%), Postives = 203/299 (67.89%), Query Frame = 1
Query: 124 MGGQKLGFAENFMLSGVXXXXXXXXXXPIERVKLLVQNQGEMIKQGTLKEPYKGVVDCTIKTFQSEGLYPFWRGNLANCIRYFPTQALNFAFKDKIKVLF--KQSKDDGYMVNFSKNIASGGAAGAMSLCFVYSLDYARTKLANDLKSAKGGERQYNGLIDVYSKTLKSDGIQGLYRGFVISCVGIIAYRGCYFGFYDTLKPMLLG-DDASLGASFMLGYGVTVVSGIISYPVDTIRRRMMMTS---GTATKYKGSIDCTVQVIKSEGAASLFKGAGANILRXXXXXXXXXXFDKFKEV 1002
M Q + FA++F+ G+AAA+SKTA APIERVKLL+Q Q KQ + YKG+VDC ++ + +G+ FWRGNLAN IRYFPTQALNFAFKDK K +F K + F+ N+ASGGAAGA SLCFVY LD+ART+LA D+ + G ER++ GL D K KSDGI+GLY+GF +S GII YR YFG YDT K ML + + S+M+ VT V+G++SYP DT+RRRMMM S G Y G++DC ++ + EG + FKGA +N+LRG+ GA VL +D+ K+V
Sbjct: 1 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQ-HASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKS-GTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKV 297
The following BLAST results are available for this feature:
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