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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006328 ID=TCONS_00006328|Name=TCONS_00006328|organism=Clytia hemisphaerica|type=transcript|length=1081bp ttctttttatcttcattttaccaacgaagttttttttcaacacTCGACTT CAAGACAGCAACAACAAACATCGCTGTTTCTTTCACCAAAAACTCAAACG CTTAAAACTTCAACAACACAAACATGGGTGGACAAAAATTAGGATTTGCC GAAAACTTTATGCTCAGTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGC CGCACCTATCGAACGAGTCAAATTATTGGTTCAAAATCAAGGTGAAATGA TAAAACAAGGAACATTGAAAGAACCATACAAAGGTGTGGTCGATTGTACC ATCAAAACATTTCAATCTGAAGGTTTGTATCCATTCTGGCGTGGAAATTT GGCTAACTGTATCCGATACTTCCCAACGCAAGCCTTGAATTTCGCTTTCa aggataaaatcaaagtcttGTTCAAACAGAGTAAGGATGATGGATACATG GTCAACTTCTCTAAAAACATTGCATCTGGTGGTGCTGCCGGAGCGATGTC TCTATGCTTCGTTTATTCGCTGGATTACGCTCGAACCAAATTAGCTAACG ATTTGAAATCAGCTAAAGGTGGAGAACGCCAATACAATGGATTGATCGAT GTTTACAGTAAAACCTTGAAATCTGATGGTATCCAAGGTTTGTACCGTGG TTTTGTCATCTCCTGTGTTGGTATCATCGCATATCGTGGATGCTACTTCG GATTCTATGATACTTTGAAACCAATGCTCCTTGGGGATGATGCCTCCCTT GGTGCATCCTTCATGTTAGGTTATGGTGTGACTGTCGTCTCTGGTATCAT TTCCTATCCTGTTGATACCATCCGTCGTCGAATGATGATGACGTCCGGAA CAGCCACCAAATACAAAGGATCCATCGATTGTACCGTACAAGTCATTAAG AGTGAAGGCGCGGCATCTTTGTTCAAAGGTGCTGGTGCTAACATCCTCCG TGGTGTCGCCGGAGCTGGTGTCCTCGCTGGTTTCGATAAATTTAAGGAAG TTTATATTAGCTTCCGAAACAGTGATTAAAAACTTTGAACATATTATTTT TGTCGAGGAAAAAATATGTATAAAGAAAtgt Run BLAST on NCBI protein sequence of TCONS_00006328-protein >TCONS_00006328-protein ID=TCONS_00006328-protein|Name=TCONS_00006328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MGGQKLGFAENFMLSGVAAAVSKTAAAPIERVKLLVQNQGEMIKQGTLKE PYKGVVDCTIKTFQSEGLYPFWRGNLANCIRYFPTQALNFAFKDKIKVLF KQSKDDGYMVNFSKNIASGGAAGAMSLCFVYSLDYARTKLANDLKSAKGG ERQYNGLIDVYSKTLKSDGIQGLYRGFVISCVGIIAYRGCYFGFYDTLKP MLLGDDASLGASFMLGYGVTVVSGIISYPVDTIRRRMMMTSGTATKYKGS IDCTVQVIKSEGAASLFKGAGANILRGVAGAGVLAGFDKFKEVYISFRNS D Run BLAST on NCBI transcript from alignment at sc0000066:670778..672078- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00006328 ID=TCONS_00006328|Name=TCONS_00006328|organism=Clytia hemisphaerica|type=transcript|length=1301bp|location=Sequence derived from alignment at sc0000066:670778..672078- (Clytia hemisphaerica) TTCTTTTTATCTTCATTTTACCAACGAAGTTTTTTTTCAACACTCGACTT
CAAGACAGCAACAACAAACATCGCTGTTTCTTTCACCAAAAACTCAAACG
CTTAAAACTTCAACAACACAAACATGGGTGGACAAAAATTAGGATTTGCC
GAAAACTTTATGCTCAGTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGC
CGCACCTATCGAACGAGTCAAATTATTGGTTCAAAATCAAGGTGAAATGA
TAAAACAAGGAACATTGAAAGAACCATACAAAGGTGTGGTCGATTGTACC
ATCAAAACATTTCAATCTGAAGGTATGATTTTTCTATATTTTCTACTTTA
TTTTTGTTTTTGAAGATACATACTTTTATTGTAGCCGTGGTCTGTTTTTT
TATTTGTATCTATAACTACTTTTTAACAACATTTTATTTCACTCGCGCTG
TATTTATGTTACTTATGTGATGAAATCTTTTTTTTTTCAAGAATAGAATG
AATAAGAGTGCAATGTCTCACAAACCTATTTTCATTTCATAGGTTTGTAT
CCATTCTGGCGTGGAAATTTGGCTAACTGTATCCGATACTTCCCAACGCA
AGCCTTGAATTTCGCTTTCAAGGATAAAATCAAAGTCTTGTTCAAACAGA
GTAAGGATGATGGATACATGGTCAACTTCTCTAAAAACATTGCATCTGGT
GGTGCTGCCGGAGCGATGTCTCTATGCTTCGTTTATTCGCTGGATTACGC
TCGAACCAAATTAGCTAACGATTTGAAATCAGCTAAAGGTGGAGAACGCC
AATACAATGGATTGATCGATGTTTACAGTAAAACCTTGAAATCTGATGGT
ATCCAAGGTTTGTACCGTGGTTTTGTCATCTCCTGTGTTGGTATCATCGC
ATATCGTGGATGCTACTTCGGATTCTATGATACTTTGAAACCAATGCTCC
TTGGGGATGATGCCTCCCTTGGTGCATCCTTCATGTTAGGTTATGGTGTG
ACTGTCGTCTCTGGTATCATTTCCTATCCTGTTGATACCATCCGTCGTCG
AATGATGATGACGTCCGGAACAGCCACCAAATACAAAGGATCCATCGATT
GTACCGTACAAGTCATTAAGAGTGAAGGCGCGGCATCTTTGTTCAAAGGT
GCTGGTGCTAACATCCTCCGTGGTGTCGCCGGAGCTGGTGTCCTCGCTGG
TTTCGATAAATTTAAGGAAGTTTATATTAGCTTCCGAAACAGTGATTAAA
AACTTTGAACATATTATTTTTGTCGAGGAAAAAATATGTATAAAGAAATG
T Coding sequence (CDS) from alignment at sc0000066:670778..672078- >TCONS_00006328 ID=TCONS_00006328|Name=TCONS_00006328|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000066:670778..672078- (Clytia hemisphaerica) GTTTGTATCCATTCTGGCGTGGAAATTTGGCTAACTGTATCCGATACTTC CCAACGCAAGCCTTGAATTTCGCTTTCAAGGATAAAATCAAAGTCTTGTT CAAACAGAGTAAGGATGATGGATACATGGTCAACTTCTCTAAAAACATTG CATCTGGTGGTGCTGCCGGAGCGATGTCTCTATGCTTCGTTTATTCGCTG GATTACGCTCGAACCAAATTAGCTAACGATTTGAAATCAGCTAAAGGTGG AGAACGCCAATACAATGGATTGATCGATGTTTACAGTAAAACCTTGAAAT CTGATGGTATCCAAGGTTTGTACCGTGGTTTTGTCATCTCCTGTGTTGGT ATCATCGCATATCGTGGATGCTACTTCGGATTCTATGATACTTTGAAACC AATGCTCCTTGGGGATGATGCCTCCCTTGGTGCATCCTTCATGTTAGGTT ATGGTGTGACTGTCGTCTCTGGTATCATTTCCTATCCTGTTGATACCATC CGTCGTCGAATGATGATGACGTCCGGAACAGCCACCAAATACAAAGGATC CATCGATTGTACCGTACAAGTCATTAAGAGTGAAGGCGCGGCATCTTTGT TCAAAGGTGCTGGTGCTAACATCCTCCGTGGTGTCGCCGGAGCTGGTGTC CTCGCTGGTTTCGATAAATTTAAGGAAGTTTATATTAGCTTCCGAAACAG TGATTAAATGGGTGGACAAAAATTAGGATTTGCCGAAAACTTTATGCTCA GTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGCCGCACCTATCGAACGA GTCAAATTATTGGTTCAAAATCAAGGTGAAATGATAAAACAAGGAACATT GAAAGAACCATACAAAGGTGTGGTCGATTGTACCATCAAAACATTTCAAT CTGAAGGTTTGTATCCATTCTGGCGTGGAAATTTGGCTAACTGTATCCGA TACTTCCCAACGCAAGCCTTGAATTTCGCTTTCAAGGATAAAATCAAAGT CTTGTTCAAACAGAGTAAGGATGATGGATACATGGTCAACTTCTCTAAAA ACATTGCATCTGGTGGTGCTGCCGGAGCGATGTCTCTATGCTTCGTTTAT TCGCTGGATTACGCTCGAACCAAATTAGCTAACGATTTGAAATCAGCTAA AGGTGGAGAACGCCAATACAATGGATTGATCGATGTTTACAGTAAAACCT TGAAATCTGATGGTATCCAAGGTTTGTACCGTGGTTTTGTCATCTCCTGT GTTGGTATCATCGCATATCGTGGATGCTACTTCGGATTCTATGATACTTT GAAACCAATGCTCCTTGGGGATGATGCCTCCCTTGGTGCATCCTTCATGT TAGGTTATGGTGTGACTGTCGTCTCTGGTATCATTTCCTATCCTGTTGAT ACCATCCGTCGTCGAATGATGATGACGTCCGGAACAGCCACCAAATACAA AGGATCCATCGATTGTACCGTACAAGTCATTAAGAGTGAAGGCGCGGCAT CTTTGTTCAAAGGTGCTGGTGCTAACATCCTCCGTGGTGTCGCCGGAGCT GGTGTCCTCGCTGGTTTCGATAAATTTAAGGAAGTTTATATTAGCTTCCG AAACAGTGATTAAATGGGTGGACAAAAATTAGGATTTGCCGAAAACTTTA TGCTCAGTGGTGTCGCTGCTGCCGTATCTAAAACTGCCGCCGCACCTATC GAACGAGTCAAATTATTGGTTCAAAATCAAGGTGAAATGATAAAACAAGG AACATTGAAAGAACCATACAAAGGTGTGGTCGATTGTACCATCAAAACAT TTCAATCTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00006328-exon-sc0000066-1575043694:671757..672078 | TCONS_00006328-exon-sc0000066-1575043694:671757..672078 | Clytia hemisphaerica | exon |
TCONS_00006328-exon-sc0000066-1575043694:670778..671536 | TCONS_00006328-exon-sc0000066-1575043694:670778..671536 | Clytia hemisphaerica | exon |
TCONS_00006328-exon-sc0000066-1510915933:671757..672078 | TCONS_00006328-exon-sc0000066-1510915933:671757..672078 | Clytia hemisphaerica | exon |
TCONS_00006328-exon-sc0000066-1510915933:670778..671536 | TCONS_00006328-exon-sc0000066-1510915933:670778..671536 | Clytia hemisphaerica | exon |
TCONS_00006328-exon-sc0000066-1491911889:671757..672078 | TCONS_00006328-exon-sc0000066-1491911889:671757..672078 | Clytia hemisphaerica | exon |
TCONS_00006328-exon-sc0000066-1491911889:670778..671536 | TCONS_00006328-exon-sc0000066-1491911889:670778..671536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000066 | supercontig | sc0000066:670778..672078 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
GO:0006810 | transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0005743 | mitochondrial inner membrane |
Vocabulary: Molecular Function
Term | Definition |
GO:0005215 | transporter activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
biological_process |
GO:0006810 |
transport |
cellular_component |
GO:0005743 |
mitochondrial inner membrane |
molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00006328 vs. Swiss-Prot (Human)
Match: ADT3 (ADP/ATP translocase 3 OS=Homo sapiens GN=SLC25A6 PE=1 SV=4) HSP 1 Score: 268.47 bits (685), Expect = 4.668e-87 Identity = 156/299 (52.17%), Postives = 203/299 (67.89%), Query Frame = 1
Query: 124 MGGQKLGFAENFMLSGVXXXXXXXXXXPIERVKLLVQNQGEMIKQGTLKEPYKGVVDCTIKTFQSEGLYPFWRGNLANCIRYFPTQALNFAFKDKIKVLF--KQSKDDGYMVNFSKNIASGGAAGAMSLCFVYSLDYARTKLANDLKSAKGGERQYNGLIDVYSKTLKSDGIQGLYRGFVISCVGIIAYRGCYFGFYDTLKPMLLG-DDASLGASFMLGYGVTVVSGIISYPVDTIRRRMMMTS---GTATKYKGSIDCTVQVIKSEGAASLFKGAGANILRXXXXXXXXXXFDKFKEV 1002
M Q + FA++F+ G+AAA+SKTA APIERVKLL+Q Q KQ + YKG+VDC ++ + +G+ FWRGNLAN IRYFPTQALNFAFKDK K +F K + F+ N+ASGGAAGA SLCFVY LD+ART+LA D+ + G ER++ GL D K KSDGI+GLY+GF +S GII YR YFG YDT K ML + + S+M+ VT V+G++SYP DT+RRRMMM S G Y G++DC ++ + EG + FKGA +N+LRG+ GA VL +D+ K+V
Sbjct: 1 MTEQAISFAKDFLAGGIAAAISKTAVAPIERVKLLLQVQ-HASKQIAADKQYKGIVDCIVRIPKEQGVLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKS-GTEREFRGLGDCLVKITKSDGIRGLYQGFSVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIAQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGGAFVLVLYDELKKV 297
The following BLAST results are available for this feature:
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