TCONS_00006296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006296
Unique NameTCONS_00006296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006296 ID=TCONS_00006296|Name=TCONS_00006296|organism=Clytia hemisphaerica|type=transcript|length=1381bp
GAATTATAAagcgaaaaaaagtaaaataaatcaCCAAAGATGCCATTTAC
ATTCAAAGTTGAAGATGTGAAATCAGCGGGGCCAAAAAGTTACGGAAAGA
ACCACTCACGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAAGAAGCT
TGGAAACAACATGGTATCATTGAAGCGATGTCAGATGCTCCCAAAAATGT
TGTGGAAACTTTCACCAAACAAAACCTACTGGTGAAATCAGTTCACGCAG
CATTTTATGGTCATCATCCGTTGATTCTATCTCCTGATGTCATTTGGTTA
ACAATCGCTCAAGGTTTAGCCAATCATAtcgatcagAATGCAGAAGAACT
TCGCAAGAAATTTGTCAATCAcgaaggaaaaaaagaaatagaaatcgAAA
GACCAACTTTTGTTAAAGGATCCAAAAACAACGACTGGCCTGGTGTTTTT
CCTGAATTTAGTGAAAAGATCGAAGCAAATACAGTTGAGGGGACTGTCAA
ATTGATTGAAAGCGATTTCTCAACGACTGGTCCTGTTGAAAAGATTGTCT
CACACATCACTTTGATGGATGCAGTCCAACATTATTTCTCATACAGCATG
TGCTGTGGTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAACCGGATGA
CTGGAAGAAAATCCGGTCGAAAGCTGCACTGTTGAAACAATACGGTCTTG
AATGGTGGTTGAAAGCTTTGTTACCTACTTTGGATCAGTTCGTGCTTGCT
TCTGAAGGAAAACCTGActtgaatttttggaaatcactTTGTAACATTAA
TGTAGGGACAAGTTTTCGTGTTTACGAGCCCGTCACTGGCTGGATTCAGG
CTTTCTTTCTCTACCTCAATGCTGCAGGGTAcggttttgatgatttcgat
cGGTTTGCAGAAGCAAAAGATGGCGTCGCCAAGAAACAATTGCAGAAGAA
TGAATGTCTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTGGCATAA
AAGAATTTGAAGCtgataaaaacaagccaagagATAGGGAAGAATTTCGT
TTCGCTGATCCACCCTCAGGGACCAAACGAGGtatcaaattaaaattatt
tccaCCCGCCCTTTCTTCCGCCCCTTTCGTTTACAAAGACATGATGACCA
TGAAAAAACATTCAATGGCGTTTATGGGTGGTTTAACCACCCTTGTTCAA
CACCCTGATGGTGCAATTGAGCCAAAAATGGGATGGGCTGTCATGGATTC
TGGCAAATGGGAACagattaaataaattaaaagacTCTTGAAACTGTTCA
GTCACTTTTTGTAGTGTGTACTGATTCTTAAAaccaatgaaaaagaaata
ctGAAGACCTTgctttcttctttaaaatgag
Run BLAST on NCBI

transcript from alignment at sc0000066:183946..191245-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006296 ID=TCONS_00006296|Name=TCONS_00006296|organism=Clytia hemisphaerica|type=transcript|length=7300bp|location=Sequence derived from alignment at sc0000066:183946..191245- (Clytia hemisphaerica)
GAATTATAAAGCGAAAAAAAGTAAAATAAATCACCAAAGATGCCATTTAC
ATTCAAAGTTGAAGATGTGAAATCAGCGGGGCCAAAAAGTTACGGAAAGA
ACCACTCACGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAAGAAGCT
TGGAAACAACATGGTATCATTGAAGCGATGTCAGATGCTCCCAAAAATGT
TGTGGAAACTTTCACCAAACAAAACCTACTGGTATGATCTCCATTTTGTA
CTCTTGTTACATAGCTACGATTTATAGACTTGATATGCAAATGTTCCATA
CCCCAGGTCAATCCCGTCATGTGGGGAGAATTCGGTAGACAGAAACTTAA
GAGTCATGTTGGTGACTAGGTATTGATCCGACAATACAGGTGGGTGAAGT
AAGATTATACTGGCCTTGTTTACTATTAGCCTCATTGAATTAACACATTC
GAACCAAAACCAGTTTGCCATTATCTGGTACACAGTAAAACTCATAGCGT
AGACGACTTTCAGTTGTGGCTGGTGTTAAGGAGATTTGAGAATTTATGAC
GGAAAGTGTTGCCTCCTAAAAGGAACTTATACGGAAAAGAACAATTTCCG
TCAGTTAAATAGAGACACAGGAATCTGATCTACTGTTGAAATATTAATTC
CCTTATTATTTTCAGGTGAAATCAGTTCACGCAGCATTTTATGGTCATCA
TCCGTTGATTCTATCTCCTGATGTCATTTGGTTAACAATCGCTCAAGGTT
TAGCCAATCATATCGATCAGGTATGTTTTTCAATGACAAGTATTTGTTAA
ACATTTCCAGAAAAGCTGAATATTCTTACCAACAAAATATGGACCTACAT
TGTTGTCATGAACCTATGGCTACCAAACCCTCATTCTATGGATCTGCTCA
GTTTCCTTTTCATTCTGTCACGCCAGTTATCTTTCAGGTCCTTGATTATC
ATACTTCGTGCTGAACTCTCATCTGGAAATAATTAAGAACTTAATAATAA
GAACTTCGCAAGAAATTTGTCAATCACGAAGAAAAGAACGAGATTGAGAT
TCTATTGAGACAGACTTTAGTACATATACAGGCCTTCATTAAATCAAAAT
CCGTTTGCATTCTGTGAAAGGTATTACATATCTCAATGTAAACTTTTGAT
AATCTTTCTTTAGAATGCAGAAGAACTTCGCAAGAAATTTGTCAATCACG
AAGGAAAAAAAGAAATAGAAATCGAAAGACCAACTTTTGTTAAAGGATCC
AAAAACAACGACTGGCCTGGTGTTTTTCCTGAATTTAGTGAAAAGATCGA
AGCAAATACAGTTGAGGGGACTGTCAAATTGATTGAAAGCGATTTCTCAA
CGACTGGTCCTGTTGAAAAGATTGTAAGTTTATAAAGCTCGTTCATGTTG
TCTTTTTATAGCAGTGCCGTAGATACCGGAGTAGGAGGAAATCATGCTGT
AAAGTTCAAAGCCATCGCACTTCGCGTTGTCATTGCAAACAAAATTTCAT
TCAAAATGACCATACTGTTACTATATCATGTAGATTGTATCAATATCCTC
TACCTTGAAATGATTTCTCTGATATAAGCCAACTTTTCGTTACCAGGTCT
CACACATCACTTTGATGGATGCAGTCCAACATTATTTCTCATACAGCATG
TGCTGTGGTTGTGGCTTTCCGGAGATCACCCTCACCGGTGAACCGGATGA
CTGGAAGAAAATCCGGTCGAAAGCTGCACTGTTGAAACAATATGGTCTTG
AATGGTGGTTGAAAGCTTTGTTACCTGCTTTGGATCAGTTCGTGCTTGCT
TCTGAAGGAAAACCTGACTTGAATTTTTGGAAATCACTTTGTAACATTAA
TGTAGGAACAAGTTTTCCTGTTTACGAGCCCGTCACTGGCTGGATTCAGG
TAATTTTCTTTCTATCATGTGACCTCGCTCTCACTGTAGTTTTGTTAGTC
AAGTTTTTTAAGATTAAAAATGTTTGCTTAAAAATGTGCAAATCTCGCTA
GAAAAATCAAAAAACCTTCCTTAAAACTTTTGAAATATAGTAAAAACATA
TGTAACAGTACACTCTAGGGAAGGGGTTGAATATTTTGCACAATCAATTC
ACTTTCATTATCTTACTTCGTTTTCCAGGCTTTCTTTCCCTACCTCAATG
CTACAGGGTACGGTCTTGAAGATTTTGATCGGTTTGCAGAAGCCAAAGAT
GGCGTCGCCAAGAAGCAATTACAGAAAAATGAATGTCTTGAACACTATAT
GGAAAGCTTCCAGCAGAAGGTTTGTGTTATATTGTCTGTGTTATATTGTC
TGTGTTTGTTTCATAAGTCTACTATTTTTCAGCCCAGGAAAAAGAGAAGG
CACCAAATCCTATTTCTACTGCACATTGGAAGACTTATACATGTTTTTTT
TTCTCATCATAACAAAGGTTGGCATAAAAGAATTTGAAGCTGATAAAAAC
AAGCCAAGAGATAGGGAAGAATTTCGTTTCGCTGATCCACCCTCAGGGAC
CAAACGAGGTATCAAATTAAAATTATTTCCACCCGCCCTTTCTTCCGCCC
CTTTCGTTTACAAAGACATGATGACCATGAAAAAACATTCAATGGCGTTT
ATGGGTGGTTTAACCACCCTTGTTCAACACCCTGATGGTGCAATTGAGCC
AAAAATGGGATGGGCTGTCATGGATTCTGGCAAATGGGAACAGATTAAAT
AAATTAAAAGACTCTTGAAACTGTTCAGTCACTTTTTGTAGTGTGTACTG
ATTCTTAAAACCAATTAAAAAGAAAAACTGAAGACCTTGCTTTCTTTCTT
CTTTAAAATGAGAATAGATTTATCATATTGTAATTTATGTAATTAGAGGT
ATTTGATTTTTTGTATAATTTTGTAATATTTTGTAACTTATTTTCCAATT
ATTGATTCCTACACAACTTTTTGCACACACAATGTAATGGTAGGAGAACT
TAAGAACGCATATCTATTTTAAGACAATTTGCGAGTATTTCATTCTCCAC
GATGCATATCTTCTGAGATATTGAAAGAGTTTAGTTTTACGGATTCTGAA
TTTTGTACTGATTTATTGTTTGTAATTTAATAAGAATACACTTTATAAGA
ATATCCACGATGAAAATAGCCAAAAAATTAAGAATAATGCTAAGAATATC
ACCATCATGGAATTTTGCTACTCAAGATAAGAATGCCATTTTTAGAGCAT
TTCCAATTATAAATTGTCAATTACCCCCAAATAAGGCTCACTCCTTTCAC
AAAAATGCCATTTTATGTTTGAGACGTATGTAGTAAATGTTAAATCTGGT
CTGAATTAGGATCCTAACCTAAGAATGCCTCTGTAAGAATGTTTTAGGAT
GATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAATGGATTTACACCA
TTCTTATTAAAAAAGCGTGTACTTGATAAAAGTTACTTTTTCCGACGCAA
ATCACAAAATTTGCAATACCCTGTTGTTATGTAAAATCATTACTTCTTCT
TTTTGTTTACCTTCCAGAAAATGACTGAAAATTGTGAAAACGTGTTATCC
AACAAAAAACCTACAAGTGACCTCGAAGCGTATTTTCAACTTATTTTGAA
GGGGCAATTTTATTTGTATTTGTTTTATTAATTTATTTCAGGTAAAATGT
TGTTCTTCATATACTTGAAGAAAAAATTATCACTCCTACTCATTACTTTC
AGAAAAGAAATATAAAGCGGAAAAGAATAAAATAAATCACAAAAGATGAC
ATTTACATTTAATGTTGAAGATGTGAAATCAGCGGGACCAAAAAGTTACG
GAAAGAATCACTCATGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAA
GAAGCTTGGAAACAACATGGTATCATTGAAGCGATGTCAGAAGCTCCCAA
AAATGTTGTGGAAACCTTCACCAAACAAAACCTACTGGTATGGTGTTTAT
CACTGGATACAAGAGAAACATCTTATCTCAGTTGCTTTTTTACTCAAATG
CAAATGCTGTTTAGTTGTAGAGGGAGGGTTTGGGATTGCACGGGGAAAGT
NAAAGCGTGTACTTGATAAAAGTTACTTTTTCCGACGCAAATCACAAAAT
TTGCAATACCCTGTTTTTATGTAAAATCATTACTTCTTCTTTTTCTTTAC
ACTCCAGAAAATAACTGAAAATTGTGAAAACCTATTATCCAACCAAAAAC
CTACAAGTGACATCGAAGCGTATTTTCAAATTATTTTGAAGGGACAATTT
TATTCGTATTTGCTTTATTAATTTATTTCAGGTAAAAATCATATACTTGA
AGAAAAAAATTATCACTCCTACTCCTTACTTTCAGAAAAGAATTATAAAG
CGAAAAAAAGTAAAATAAATCACCAAAGATGCCATTTACATTTAAAGTTG
AAGATGTGAAATCAGCGGGACCAAAAAGTTACGGAAAGAACAGCTCACGG
ATATTTGAACCTCGACAAGGTCAATCATTAGAAGAAGCTTGGAAACAACA
TGGTATCATTGAAGCGATGTCAGAAGCTCCCAAAAATATTGTGGAAACTT
TCACCAAACAAAACCTACTGGTATGGTGTTTATCACTGGATACAAGAGAA
ACATCTTATCTCAGTTGCTTTTTTACTCAAATGCTGTTTAGTTGTAGAGG
GAGGGTTTAGAATTCACAAGAAAAGTGTTAGTTTAAAAGAAATGTTCTGT
CATTAAATTTTGAGCCCCCGTCAGACTTGCCGCTGTCGCTCCGTATTTTT
AAAGGTTACATGTTAAAAAGAGTATAGTTAACCTATACAACCCTATATAC
AGGATATGTGAAAATTCTCCAATTTCAGGTGAAATCAGTTCACGCAGCAT
TTTATGGTCATCATCCGTTGATTTTATCTCCTGATGTCATTTGGTTAACA
ATTGCTCAAGGTTTAGCCAATCATATCGATCAGGTATACTTCTTTCAATG
ACAAGTATTTGTTACAAGCTAGCCTTGGGCTAGCTGGTGGATTGCTAAAG
TTTCAAAAATAAAGAAAAAATTCAAAATGTCCATGACCAACTTTTTTTAT
GTTTCCTAGTCAAGTTGAGGGTGCTGATTCCGAATTTGAATTCCAAATCG
GCACCCTCAAATTGACTAGGAAACATATCAAAAAGTTGGTCATGGACATT
TCGGAAAAAAAAGTGAAACGTTTTTGGGTAACTGCGGCCACGGCCTATAT
GTTCCTTCTTCATATCAACGAAATGAAAGTAAGGACTGGAGTTTCGACCC
TCCGTATTATTTGGGTGATTGCTAGTGAAAACAGGCATCTGCATATATTC
GGACCAATTATCTTAAAGAAGTACGGTAATGAATTTTGAATTTCCTAACC
ATACCTTCTCAAAATTCATTATATAAATTCGTTGTCCGGAAATATACATT
CATCTCATGAAAGCTAAGGGGGTAGGCGACTTCTTACCATAATCTATTTA
GTCAAGCATGTTATCTTTCAACCTCTTGATTGTTTAGCTATCGTGATGAA
CACCGATCAAGAAATCATCTTTCTTTAGAATGCAAAGGAACTTCGCAAAA
AATTTGTCAATCACGAAGAAAAGAAAGAGATAGGGATTCTATTGAGACAG
ACTTTAGTACATATATAGGCCTTCATCAAATCAAAATCCGTTTGCATTCT
GTGAAAGGTATTACATATCTCAATGTAAACTTTTGATAATCTTCTTTTAG
AATGCAGAGGAACTCCGCAAGAAATTTGTCAATCACGAAGGAAAGAAAGG
GATAGAAATTGAAAGACCAAACTTTGTCAAAGGATCCAAAAACAACGACT
GGCCTGGTGTTTTTCCTGAATTCAGTGAAAAGATCGAAGCAAATACAGTC
GAGGGGACTGTCAAATTGATTGAAAGCGATTTCTCAACGACTGGTCCTGT
TGAAAAAATTGTAAGCTACTTGCTTATAAATTGTTTCTTCTTACCTCGAC
AAAGTTTAACATGCCCACACACAACGCTTTGCTCGATTTAGGATTCAAAC
GCTAAATATATAGGACGACAAATAGCTATTATCTCTCAAAACTAATACTT
TCCATTCCTTGATGTCTTCAATGCTATTTCTCCAATTTCGAGTAATTCTC
TCAACACCAGGTCTCACACATCACTTTGATGGATGCAGTCCAACATTATT
TCTCATACAGCATGTGCTGTGGTTGTGGCTTTCCGGAGATCACCCTCACC
GGTGAACCGGATGACTGGAAGAAAATCCGGTCGAAAGCTGCACTGTTGAA
ACAATACGGTCTTGAATGGTGGTTGAAAGCTTTGTTACCTACTTTGGATC
AGTTCGTGCTTGCTTCTGAAGGAAAACCTGACTTGAATTTTTGGAAATCA
CTTTGTAACATTAATGTAGGGACAAGTTTTCGTGTTTACGAGCCCGTCAC
TGGCTGGATTCAGGTAATTTTCTTTTCATCATGTGACCTCGCTCTCACTG
TAGTTTTGTTAGTCAAGTTTTTTAAGATTAAAAATGTTTGCTTAAAAATG
TGCAAATCTCGCTAAAAAATCAAAAAACCTTCCTTAAAACTCTTGAAGTG
ATTTATAGTAAAAACATGTGTAACAGTACACTCTAGGGAAGAGGTTGAAT
ATTTTTCACAATCAATTCACTTTCATTATCTTACTTCTTCGTTTTCCAGG
CTTTCTTTCTCTACCTCAATGCTGCAGGGTACGGTTTTGATGATTTCGAT
CGGTTTGCAGAAGCAAAAGATGGCGTCGCCAAGAAACAATTGCAGAAGAA
TGAATGTCTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTTGTATTT
TATGACTTTTGTACCATAAGTCTACTATTTTTCAGAGAAGGCACCAAATC
CTATTTCTACTGCACATTGGAAGACTTATACATGTTTTTTTTTTCTCATC
ATAACAAAGGTTGGCATAAAAGAATTTGAAGCTGATAAAAACAAGCCAAG
AGATAGGGAAGAATTTCGTTTCGCTGATCCACCCTCAGGGACCAAACGAG
GTATCAAATTAAAATTATTTCCACCCGCCCTTTCTTCCGCCCCTTTCGTT
TACAAAGACATGATGACCATGAAAAAACATTCAATGGCGTTTATGGGTGG
TTTAACCACCCTTGTTCAACACCCTGATGGTGCAATTGAGCCAAAAATGG
GATGGGCTGTCATGGATTCTGGCAAATGGGAACAGATTAAATAAATTAAA
AGACTCTTGAAACTGTTCAGTCACTTTTTGTAGTGTGTACTGATTCTTAA
AACCAATGAAAAAGAAATACTGAAGACCTTGCTTTCTTCTTTAAAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003593XLOC_003593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006296-exon-sc0000066-1575043694:191015..191245TCONS_00006296-exon-sc0000066-1575043694:191015..191245Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1575043694:190476..190580TCONS_00006296-exon-sc0000066-1575043694:190476..190580Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1575043694:189873..190082TCONS_00006296-exon-sc0000066-1575043694:189873..190082Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1575043694:184833..185135TCONS_00006296-exon-sc0000066-1575043694:184833..185135Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1575043694:184456..184596TCONS_00006296-exon-sc0000066-1575043694:184456..184596Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1575043694:183946..184336TCONS_00006296-exon-sc0000066-1575043694:183946..184336Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1510915933:191015..191245TCONS_00006296-exon-sc0000066-1510915933:191015..191245Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1510915933:190476..190580TCONS_00006296-exon-sc0000066-1510915933:190476..190580Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1510915933:189873..190082TCONS_00006296-exon-sc0000066-1510915933:189873..190082Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1510915933:184833..185135TCONS_00006296-exon-sc0000066-1510915933:184833..185135Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1510915933:184456..184596TCONS_00006296-exon-sc0000066-1510915933:184456..184596Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1510915933:183946..184336TCONS_00006296-exon-sc0000066-1510915933:183946..184336Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1491911889:191015..191245TCONS_00006296-exon-sc0000066-1491911889:191015..191245Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1491911889:190476..190580TCONS_00006296-exon-sc0000066-1491911889:190476..190580Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1491911889:189873..190082TCONS_00006296-exon-sc0000066-1491911889:189873..190082Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1491911889:184833..185135TCONS_00006296-exon-sc0000066-1491911889:184833..185135Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1491911889:184456..184596TCONS_00006296-exon-sc0000066-1491911889:184456..184596Clytia hemisphaericaexon
TCONS_00006296-exon-sc0000066-1491911889:183946..184336TCONS_00006296-exon-sc0000066-1491911889:183946..184336Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:183946..191245 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.47174	8.12287	7.6082	6.26281	3.33725	1.70806	1.65373	2.14313	4.80796	6.85422	7.62209	2.54334	18.3036	12.468	5.56474	5.56802	3.75623	4.86485	7.31083	15.6702	3.68835	5.89862	4.79381	2.71208	8.11707	10.6629	6.32273	4.07535	7.92059	9.03598
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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