XLOC_003593 (gene) - C. hemisphaerica

Overview
NameXLOC_003593
Unique NameXLOC_003593
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000066:181766..191254-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003593 ID=XLOC_003593|Name=XLOC_003593|organism=Clytia hemisphaerica|type=gene|length=9489bp|location=Sequence derived from alignment at sc0000066:181766..191254- (Clytia hemisphaerica)
TTCAGAAAAGAATTATAAAGCGAAAAAAAGTAAAATAAATCACCAAAGAT
GCCATTTACATTCAAAGTTGAAGATGTGAAATCAGCGGGGCCAAAAAGTT
ACGGAAAGAACCACTCACGGATGTTTGAACCTCAACAAGGTCAATCTTTA
GAAGAAGCTTGGAAACAACATGGTATCATTGAAGCGATGTCAGATGCTCC
CAAAAATGTTGTGGAAACTTTCACCAAACAAAACCTACTGGTATGATCTC
CATTTTGTACTCTTGTTACATAGCTACGATTTATAGACTTGATATGCAAA
TGTTCCATACCCCAGGTCAATCCCGTCATGTGGGGAGAATTCGGTAGACA
GAAACTTAAGAGTCATGTTGGTGACTAGGTATTGATCCGACAATACAGGT
GGGTGAAGTAAGATTATACTGGCCTTGTTTACTATTAGCCTCATTGAATT
AACACATTCGAACCAAAACCAGTTTGCCATTATCTGGTACACAGTAAAAC
TCATAGCGTAGACGACTTTCAGTTGTGGCTGGTGTTAAGGAGATTTGAGA
ATTTATGACGGAAAGTGTTGCCTCCTAAAAGGAACTTATACGGAAAAGAA
CAATTTCCGTCAGTTAAATAGAGACACAGGAATCTGATCTACTGTTGAAA
TATTAATTCCCTTATTATTTTCAGGTGAAATCAGTTCACGCAGCATTTTA
TGGTCATCATCCGTTGATTCTATCTCCTGATGTCATTTGGTTAACAATCG
CTCAAGGTTTAGCCAATCATATCGATCAGGTATGTTTTTCAATGACAAGT
ATTTGTTAAACATTTCCAGAAAAGCTGAATATTCTTACCAACAAAATATG
GACCTACATTGTTGTCATGAACCTATGGCTACCAAACCCTCATTCTATGG
ATCTGCTCAGTTTCCTTTTCATTCTGTCACGCCAGTTATCTTTCAGGTCC
TTGATTATCATACTTCGTGCTGAACTCTCATCTGGAAATAATTAAGAACT
TAATAATAAGAACTTCGCAAGAAATTTGTCAATCACGAAGAAAAGAACGA
GATTGAGATTCTATTGAGACAGACTTTAGTACATATACAGGCCTTCATTA
AATCAAAATCCGTTTGCATTCTGTGAAAGGTATTACATATCTCAATGTAA
ACTTTTGATAATCTTTCTTTAGAATGCAGAAGAACTTCGCAAGAAATTTG
TCAATCACGAAGGAAAAAAAGAAATAGAAATCGAAAGACCAACTTTTGTT
AAAGGATCCAAAAACAACGACTGGCCTGGTGTTTTTCCTGAATTTAGTGA
AAAGATCGAAGCAAATACAGTTGAGGGGACTGTCAAATTGATTGAAAGCG
ATTTCTCAACGACTGGTCCTGTTGAAAAGATTGTAAGTTTATAAAGCTCG
TTCATGTTGTCTTTTTATAGCAGTGCCGTAGATACCGGAGTAGGAGGAAA
TCATGCTGTAAAGTTCAAAGCCATCGCACTTCGCGTTGTCATTGCAAACA
AAATTTCATTCAAAATGACCATACTGTTACTATATCATGTAGATTGTATC
AATATCCTCTACCTTGAAATGATTTCTCTGATATAAGCCAACTTTTCGTT
ACCAGGTCTCACACATCACTTTGATGGATGCAGTCCAACATTATTTCTCA
TACAGCATGTGCTGTGGTTGTGGCTTTCCGGAGATCACCCTCACCGGTGA
ACCGGATGACTGGAAGAAAATCCGGTCGAAAGCTGCACTGTTGAAACAAT
ATGGTCTTGAATGGTGGTTGAAAGCTTTGTTACCTGCTTTGGATCAGTTC
GTGCTTGCTTCTGAAGGAAAACCTGACTTGAATTTTTGGAAATCACTTTG
TAACATTAATGTAGGAACAAGTTTTCCTGTTTACGAGCCCGTCACTGGCT
GGATTCAGGTAATTTTCTTTCTATCATGTGACCTCGCTCTCACTGTAGTT
TTGTTAGTCAAGTTTTTTAAGATTAAAAATGTTTGCTTAAAAATGTGCAA
ATCTCGCTAGAAAAATCAAAAAACCTTCCTTAAAACTTTTGAAATATAGT
AAAAACATATGTAACAGTACACTCTAGGGAAGGGGTTGAATATTTTGCAC
AATCAATTCACTTTCATTATCTTACTTCGTTTTCCAGGCTTTCTTTCCCT
ACCTCAATGCTACAGGGTACGGTCTTGAAGATTTTGATCGGTTTGCAGAA
GCCAAAGATGGCGTCGCCAAGAAGCAATTACAGAAAAATGAATGTCTTGA
ACACTATATGGAAAGCTTCCAGCAGAAGGTTTGTGTTATATTGTCTGTGT
TATATTGTCTGTGTTTGTTTCATAAGTCTACTATTTTTCAGCCCAGGAAA
AAGAGAAGGCACCAAATCCTATTTCTACTGCACATTGGAAGACTTATACA
TGTTTTTTTTTCTCATCATAACAAAGGTTGGCATAAAAGAATTTGAAGCT
GATAAAAACAAGCCAAGAGATAGGGAAGAATTTCGTTTCGCTGATCCACC
CTCAGGGACCAAACGAGGTATCAAATTAAAATTATTTCCACCCGCCCTTT
CTTCCGCCCCTTTCGTTTACAAAGACATGATGACCATGAAAAAACATTCA
ATGGCGTTTATGGGTGGTTTAACCACCCTTGTTCAACACCCTGATGGTGC
AATTGAGCCAAAAATGGGATGGGCTGTCATGGATTCTGGCAAATGGGAAC
AGATTAAATAAATTAAAAGACTCTTGAAACTGTTCAGTCACTTTTTGTAG
TGTGTACTGATTCTTAAAACCAATTAAAAAGAAAAACTGAAGACCTTGCT
TTCTTTCTTCTTTAAAATGAGAATAGATTTATCATATTGTAATTTATGTA
ATTAGAGGTATTTGATTTTTTGTATAATTTTGTAATATTTTGTAACTTAT
TTTCCAATTATTGATTCCTACACAACTTTTTGCACACACAATGTAATGGT
AGGAGAACTTAAGAACGCATATCTATTTTAAGACAATTTGCGAGTATTTC
ATTCTCCACGATGCATATCTTCTGAGATATTGAAAGAGTTTAGTTTTACG
GATTCTGAATTTTGTACTGATTTATTGTTTGTAATTTAATAAGAATACAC
TTTATAAGAATATCCACGATGAAAATAGCCAAAAAATTAAGAATAATGCT
AAGAATATCACCATCATGGAATTTTGCTACTCAAGATAAGAATGCCATTT
TTAGAGCATTTCCAATTATAAATTGTCAATTACCCCCAAATAAGGCTCAC
TCCTTTCACAAAAATGCCATTTTATGTTTGAGACGTATGTAGTAAATGTT
AAATCTGGTCTGAATTAGGATCCTAACCTAAGAATGCCTCTGTAAGAATG
TTTTAGGATGATTTTCCCAAAAAAGTTAAGAATATCCATGATGAAATGGA
TTTACACCATTCTTATTAAAAAAGCGTGTACTTGATAAAAGTTACTTTTT
CCGACGCAAATCACAAAATTTGCAATACCCTGTTGTTATGTAAAATCATT
ACTTCTTCTTTTTGTTTACCTTCCAGAAAATGACTGAAAATTGTGAAAAC
GTGTTATCCAACAAAAAACCTACAAGTGACCTCGAAGCGTATTTTCAACT
TATTTTGAAGGGGCAATTTTATTTGTATTTGTTTTATTAATTTATTTCAG
GTAAAATGTTGTTCTTCATATACTTGAAGAAAAAATTATCACTCCTACTC
ATTACTTTCAGAAAAGAAATATAAAGCGGAAAAGAATAAAATAAATCACA
AAAGATGACATTTACATTTAATGTTGAAGATGTGAAATCAGCGGGACCAA
AAAGTTACGGAAAGAATCACTCATGGATGTTTGAACCTCAACAAGGTCAA
TCTTTAGAAGAAGCTTGGAAACAACATGGTATCATTGAAGCGATGTCAGA
AGCTCCCAAAAATGTTGTGGAAACCTTCACCAAACAAAACCTACTGGTAT
GGTGTTTATCACTGGATACAAGAGAAACATCTTATCTCAGTTGCTTTTTT
ACTCAAATGCAAATGCTGTTTAGTTGTAGAGGGAGGGTTTGGGATTGCAC
GGGGAAAGTNAAAGCGTGTACTTGATAAAAGTTACTTTTTCCGACGCAAA
TCACAAAATTTGCAATACCCTGTTTTTATGTAAAATCATTACTTCTTCTT
TTTCTTTACACTCCAGAAAATAACTGAAAATTGTGAAAACCTATTATCCA
ACCAAAAACCTACAAGTGACATCGAAGCGTATTTTCAAATTATTTTGAAG
GGACAATTTTATTCGTATTTGCTTTATTAATTTATTTCAGGTAAAAATCA
TATACTTGAAGAAAAAAATTATCACTCCTACTCCTTACTTTCAGAAAAGA
ATTATAAAGCGAAAAAAAGTAAAATAAATCACCAAAGATGCCATTTACAT
TTAAAGTTGAAGATGTGAAATCAGCGGGACCAAAAAGTTACGGAAAGAAC
AGCTCACGGATATTTGAACCTCGACAAGGTCAATCATTAGAAGAAGCTTG
GAAACAACATGGTATCATTGAAGCGATGTCAGAAGCTCCCAAAAATATTG
TGGAAACTTTCACCAAACAAAACCTACTGGTATGGTGTTTATCACTGGAT
ACAAGAGAAACATCTTATCTCAGTTGCTTTTTTACTCAAATGCTGTTTAG
TTGTAGAGGGAGGGTTTAGAATTCACAAGAAAAGTGTTAGTTTAAAAGAA
ATGTTCTGTCATTAAATTTTGAGCCCCCGTCAGACTTGCCGCTGTCGCTC
CGTATTTTTAAAGGTTACATGTTAAAAAGAGTATAGTTAACCTATACAAC
CCTATATACAGGATATGTGAAAATTCTCCAATTTCAGGTGAAATCAGTTC
ACGCAGCATTTTATGGTCATCATCCGTTGATTTTATCTCCTGATGTCATT
TGGTTAACAATTGCTCAAGGTTTAGCCAATCATATCGATCAGGTATACTT
CTTTCAATGACAAGTATTTGTTACAAGCTAGCCTTGGGCTAGCTGGTGGA
TTGCTAAAGTTTCAAAAATAAAGAAAAAATTCAAAATGTCCATGACCAAC
TTTTTTTATGTTTCCTAGTCAAGTTGAGGGTGCTGATTCCGAATTTGAAT
TCCAAATCGGCACCCTCAAATTGACTAGGAAACATATCAAAAAGTTGGTC
ATGGACATTTCGGAAAAAAAAGTGAAACGTTTTTGGGTAACTGCGGCCAC
GGCCTATATGTTCCTTCTTCATATCAACGAAATGAAAGTAAGGACTGGAG
TTTCGACCCTCCGTATTATTTGGGTGATTGCTAGTGAAAACAGGCATCTG
CATATATTCGGACCAATTATCTTAAAGAAGTACGGTAATGAATTTTGAAT
TTCCTAACCATACCTTCTCAAAATTCATTATATAAATTCGTTGTCCGGAA
ATATACATTCATCTCATGAAAGCTAAGGGGGTAGGCGACTTCTTACCATA
ATCTATTTAGTCAAGCATGTTATCTTTCAACCTCTTGATTGTTTAGCTAT
CGTGATGAACACCGATCAAGAAATCATCTTTCTTTAGAATGCAAAGGAAC
TTCGCAAAAAATTTGTCAATCACGAAGAAAAGAAAGAGATAGGGATTCTA
TTGAGACAGACTTTAGTACATATATAGGCCTTCATCAAATCAAAATCCGT
TTGCATTCTGTGAAAGGTATTACATATCTCAATGTAAACTTTTGATAATC
TTCTTTTAGAATGCAGAGGAACTCCGCAAGAAATTTGTCAATCACGAAGG
AAAGAAAGGGATAGAAATTGAAAGACCAAACTTTGTCAAAGGATCCAAAA
ACAACGACTGGCCTGGTGTTTTTCCTGAATTCAGTGAAAAGATCGAAGCA
AATACAGTCGAGGGGACTGTCAAATTGATTGAAAGCGATTTCTCAACGAC
TGGTCCTGTTGAAAAAATTGTAAGCTACTTGCTTATAAATTGTTTCTTCT
TACCTCGACAAAGTTTAACATGCCCACACACAACGCTTTGCTCGATTTAG
GATTCAAACGCTAAATATATAGGACGACAAATAGCTATTATCTCTCAAAA
CTAATACTTTCCATTCCTTGATGTCTTCAATGCTATTTCTCCAATTTCGA
GTAATTCTCTCAACACCAGGTCTCACACATCACTTTGATGGATGCAGTCC
AACATTATTTCTCATACAGCATGTGCTGTGGTTGTGGCTTTCCGGAGATC
ACCCTCACCGGTGAACCGGATGACTGGAAGAAAATCCGGTCGAAAGCTGC
ACTGTTGAAACAATACGGTCTTGAATGGTGGTTGAAAGCTTTGTTACCTA
CTTTGGATCAGTTCGTGCTTGCTTCTGAAGGAAAACCTGACTTGAATTTT
TGGAAATCACTTTGTAACATTAATGTAGGGACAAGTTTTCGTGTTTACGA
GCCCGTCACTGGCTGGATTCAGGTAATTTTCTTTTCATCATGTGACCTCG
CTCTCACTGTAGTTTTGTTAGTCAAGTTTTTTAAGATTAAAAATGTTTGC
TTAAAAATGTGCAAATCTCGCTAAAAAATCAAAAAACCTTCCTTAAAACT
CTTGAAGTGATTTATAGTAAAAACATGTGTAACAGTACACTCTAGGGAAG
AGGTTGAATATTTTTCACAATCAATTCACTTTCATTATCTTACTTCTTCG
TTTTCCAGGCTTTCTTTCTCTACCTCAATGCTGCAGGGTACGGTTTTGAT
GATTTCGATCGGTTTGCAGAAGCAAAAGATGGCGTCGCCAAGAAACAATT
GCAGAAGAATGAATGTCTTGAACACTATATGGAAAGCTTCCAGCAGAAGG
TTTGTATTTTATGACTTTTGTACCATAAGTCTACTATTTTTCAGAGAAGG
CACCAAATCCTATTTCTACTGCACATTGGAAGACTTATACATGTTTTTTT
TTTCTCATCATAACAAAGGTTGGCATAAAAGAATTTGAAGCTGATAAAAA
CAAGCCAAGAGATAGGGAAGAATTTCGTTTCGCTGATCCACCCTCAGGGA
CCAAACGAGGTATCAAATTAAAATTATTTCCACCCGCCCTTTCTTCCGCC
CCTTTCGTTTACAAAGACATGATGACCATGAAAAAACATTCAATGGCGTT
TATGGGTGGTTTAACCACCCTTGTTCAACACCCTGATGGTGCAATTGAGC
CAAAAATGGGATGGGCTGTCATGGATTCTGGCAAATGGGAACAGATTAAA
TAAATTAAAAGACTCTTGAAACTGTTCAGTCACTTTTTGTAGTGTGTACT
GATTCTTAAAACCAATGAAAAAGAAATACTGAAGACCTTGCTTTCTTCTT
TAAAATGAGAATAGATTTATCATATTGTAATTTATGTAATTATAGGTATT
TGATTTTTTGTATAATTTTGTAATATTTTGTAACTTATTTTTCAATTATT
GATTCCTACACAACCTTTTGCACACGCAATGTAATGGTAGGAGAACTTAA
GAAAGCTTATGTATTTTAAGACAATTTGCGAGCATTTCATTTTCCACAAT
GTATATAATGAGATATTGAAAGAGTTTAGTTTTACTGATTTATTGTTTGT
AATTTAAAAAGACTGGATTACTTGGCAAAAGTTAGTTTTTCCGACGCAAA
TCAGCAAAATTTGCAATACCCTTGTTATGTAAAATCATTACTTCTTCTTT
TTGTTTACCTTCCAGAAAATGACTGAAAATTGTGAAAACGTGTTATCCAA
CAAAAAATCTACAAGAGACCTACAAGCGTATTTTCAACTTATTTTGAAGG
GACGATTTTATTCGTATTCGTTTTATTAATTTATTTCAGGTAAAAATTCC
TATACTTGAAGAAAAAATTATCACTCCTACTCATTACTTTCAGAAAATAA
TTATAAAGCGAAAAAAAGTAAAATAAATCACCAAAGATGCCATTTGCATT
TAAAGTTGAAGATCTAAAATCAGCGGGACCAAAAAGTTACGGAAAGAACC
ACTCATGGATGTTTGAACCTCAACAAGGTCAATCTTTAGAAGAAGCTTGG
AAACAACATGGTATCATTGAAGCGATGTCAGAAGCTCCCAAAAATATTGT
GGAAACTTTCACCAAACAAAACCTACTGGTATGGTGTTTATCACTGGATA
CAAGAGAAACATCTTATCTCAGTTGCTTTTTTACTCAAATGAAAATGCTG
TTTAGTTGTAGAGGGAGGGTTTGGGATTGCACGGGGAAAGTGTTAGTTTA
AAAGAAATGTTCTCTGTCATTAAATTTTGAGCCCCCGTATGACTTGCCGC
TGTCGCTCCATATTTTTTAAGGTTACATGTTAAAAAGAGTGTAGTTAACC
AATACAAACCTATACACAGGATATGTGAAAATTCTCCATTTTCAGGTGAA
ATCAGTTCACGCAGCATTTTATGGTCATCATCCGTTGATTTTATCTCCTG
ATGTCATTTGGTTAACAATTGCTCAAGGTTTAGCCAATCATTTAGTCATA
TCATGTCTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTTGTGTCAT
ATTGTCTGTATATATTTATCATAGTTGGCTCTATTATCTGTTAATTTAGT
TTCTTTTAAGTAGCAATGCTATAACATTAGTCAAAAGTGAAATAAAAAAG
TGGCGCGATTTTTGCGTGTTTACTGTTATATTAAGCTGCACCTATCGATG
CTGTTGTCGCTTCATCTAAGTTCATCAACAATGGTTGATAGATGATTTTA
GGATATCCGAAAAACCAGAATTTTCTTGAGCCCATGAGGTTAGGATTTGT
CATAATTTGTTCTTAGGTTTCGGCTAAAGTCTCTTATTCTTGTTAAAATG
TTCGCAGAAAAAACGTGTGAATTTCTTTTCTACAGCTTGGGGTAAAAGAG
TTTGAACATCATAAAAACAAATTCAAGCAGAAAGGACAACACTTTGCTTG
GGCTGATAGACCTCCTTCTGGAACTGAGAGAGGTATCAAATTAGAATTAT
TTCCACCCGCCCTTTCTTCCGCCCCTTTCGTTTACAAAGACACGGTGACA
AATAAAAAACATTCAATGGCGTTTATGGGTGGGTTAACCACCCTTGTTCA
ACACCCTAGTGGCGCCATCGAAGCAAAAATAGGATGGGCGGTCATCGATT
CTGGCAAATGGGAACCAATCAAATTTTATAAAGAAACCTTGGTTTAGTCC
AATGCATACATATAGTGTGTTCATAAAAAAGGAAATGGAATTTGCTGTTA
ATTTTTAACTATTAATTTTTTTAAAGTTAATTTTTTTAAAGTTAATTTAT
TTTTATACTAAATTATATTAGATAATAGTTTATGTAATTAATGATTTTTA
AATACCCTAATTTTTAATTTTTTAAGATTTCTTTTTAAATCACTCAAGGT
GAAATGTGTAGCTAGCGGTAAAGATTGTAGAATGATCTCCGGGGGGGGGG
CACTCGTTCTGAAAACGATCACACGTTCGGCCCAAAAATTTACTTTCAAA
ATAGGACCTTCACAGTGCAGAAAATAAGCTACGAAATTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006297TCONS_00006297Clytia hemisphaericatranscript
TCONS_00006296TCONS_00006296Clytia hemisphaericatranscript
TCONS_00006295TCONS_00006295Clytia hemisphaericatranscript
TCONS_00006294TCONS_00006294Clytia hemisphaericatranscript
TCONS_00006293TCONS_00006293Clytia hemisphaericatranscript
TCONS_00006292TCONS_00006292Clytia hemisphaericatranscript
TCONS_00006291TCONS_00006291Clytia hemisphaericatranscript
TCONS_00006290TCONS_00006290Clytia hemisphaericatranscript
TCONS_00006289TCONS_00006289Clytia hemisphaericatranscript
TCONS_00006288TCONS_00006288Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006290-proteinTCONS_00006290-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:181766..191254 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.7	46.29	52.8	47.55	21.25	15.71	12.55	17.86	31.63	34.04	77.25	19.86	107.39	65.17	31.67	40.68	26.24	36.03	62.13	97.62	36.25	33.21	33.6	41.35	71.71	86.96	58.69	66.35	66.4	51.47