TCONS_00006297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006297
Unique NameTCONS_00006297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006297 ID=TCONS_00006297|Name=TCONS_00006297|organism=Clytia hemisphaerica|type=transcript|length=1532bp
CCAAAAAGTTACGGAAAGAACCACTCACGGATGTTTGAACCTCAACAAGG
TCAATCTTTAGAAGAAGCTTGGAAACAACATGGTATCATTGAAGCGATGT
CAGATGCTCCCAAAAATGTTGTGGAAACTTTCACCAAACAAAACCTACTG
GTGAAATCAGTTCACGCAGCATTTTATGGTCATCATCCGTTGATTCTATC
TCCTGATGTCATTTGGTTAACAATCGCTCAAGGTTTAGCCAATCATAtcg
atcagAATGCAGAAGAACTTCGCAAGAAATTTGTCAATCAcgaaggaaaa
aaagaaatagaaatcgAAAGACCAACTTTTGTTAAAGGATCCAAAAACAA
CGACTGGCCTGGTGTTTTTCCTGAATTTAGTGAAAAGATCGAAGCAAATA
CAGTTGAGGGGACTGTCAAATTGATTGAAAGCGATTTCTCAACGACTGGT
CCTGTTGAAAAGATTGTCTCACACATCACTTTGATGGATGCAGTCCAACA
TTATTTCTCATACAGCATGTGCTGTGGTTGTGGCTTTCCGGAGATCACCC
TCACCGGTGAACCGGATGACTGGAAGAAAATCCGGTCGAAAGCTGCACTG
TTGAAACAATATGGTCTTGAATGGTGGTTGAAAGCTTTGTTACCTGCTTT
GGATCAGTTCGTGCTTGCTTCTGAAGGAAAACCTGActtgaatttttgga
aatcactTTGTAACATTAATGTAGGAACAAGTTTTCCTGTTTACGAGCCC
GTCACTGGCTGGATTCAGGCTTTCTTTCCCTACCTCAATGCTACAGGGTA
CGGTCTTGAAGATTTTGATCGGTTTGCAGAAGCCAAAGATGGCGTCGCCA
AGAAGCAATTACAGAAAAATGAATGTCTTGAACACTATATGGAAAGCTTC
CAGCAGAAGGTTGGCATAAAAGAATTTGAAGCtgataaaaacaagccaag
agATAGGGAAGAATTTCGTTTCGCTGATCCACCCTCAGGGACCAAACGAG
GtatcaaattaaaattatttccaCCCGCCCTTTCTTCCGCCCCTTTCGTT
TACAAAGACATGATGACCATGAAAAAACATTCAATGGCGTTTATGGGTGG
TTTAACCACCCTTGTTCAACACCCTGATGGTGCAATTGAGCCAAAAATGG
GATGGGCTGTCATGGATTCTGGCAAATGGGAACagattaaataaattaaa
agacTCTTGAAACTGTTCAGTCACTTTTTGTAGTGTGTACTGATTCTTAA
Aaccaattaaaaagaaaaactgaagaccttgctttctttcttctttaaaa
tgagAATAGATTTATCATATTGTAATTTATGTAATTAGAggtatttgatt
ttttgtataattttgtaatattttgtaaCTTATTTTCCAATTATTGATTC
CTACACAACTTTTTGCACACACAATGTAATGGTAGGAGAACTTAAGAACG
CATATCTATTTTAAGACAATTTGCGAGTATTTCATTCTCCACGATGCATA
TCTTCTGAGATATTGAAAGAGTTTAGTTTTAC
Run BLAST on NCBI

transcript from alignment at sc0000066:188206..191164-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006297 ID=TCONS_00006297|Name=TCONS_00006297|organism=Clytia hemisphaerica|type=transcript|length=2959bp|location=Sequence derived from alignment at sc0000066:188206..191164- (Clytia hemisphaerica)
CCAAAAAGTTACGGAAAGAACCACTCACGGATGTTTGAACCTCAACAAGG
TCAATCTTTAGAAGAAGCTTGGAAACAACATGGTATCATTGAAGCGATGT
CAGATGCTCCCAAAAATGTTGTGGAAACTTTCACCAAACAAAACCTACTG
GTATGATCTCCATTTTGTACTCTTGTTACATAGCTACGATTTATAGACTT
GATATGCAAATGTTCCATACCCCAGGTCAATCCCGTCATGTGGGGAGAAT
TCGGTAGACAGAAACTTAAGAGTCATGTTGGTGACTAGGTATTGATCCGA
CAATACAGGTGGGTGAAGTAAGATTATACTGGCCTTGTTTACTATTAGCC
TCATTGAATTAACACATTCGAACCAAAACCAGTTTGCCATTATCTGGTAC
ACAGTAAAACTCATAGCGTAGACGACTTTCAGTTGTGGCTGGTGTTAAGG
AGATTTGAGAATTTATGACGGAAAGTGTTGCCTCCTAAAAGGAACTTATA
CGGAAAAGAACAATTTCCGTCAGTTAAATAGAGACACAGGAATCTGATCT
ACTGTTGAAATATTAATTCCCTTATTATTTTCAGGTGAAATCAGTTCACG
CAGCATTTTATGGTCATCATCCGTTGATTCTATCTCCTGATGTCATTTGG
TTAACAATCGCTCAAGGTTTAGCCAATCATATCGATCAGGTATGTTTTTC
AATGACAAGTATTTGTTAAACATTTCCAGAAAAGCTGAATATTCTTACCA
ACAAAATATGGACCTACATTGTTGTCATGAACCTATGGCTACCAAACCCT
CATTCTATGGATCTGCTCAGTTTCCTTTTCATTCTGTCACGCCAGTTATC
TTTCAGGTCCTTGATTATCATACTTCGTGCTGAACTCTCATCTGGAAATA
ATTAAGAACTTAATAATAAGAACTTCGCAAGAAATTTGTCAATCACGAAG
AAAAGAACGAGATTGAGATTCTATTGAGACAGACTTTAGTACATATACAG
GCCTTCATTAAATCAAAATCCGTTTGCATTCTGTGAAAGGTATTACATAT
CTCAATGTAAACTTTTGATAATCTTTCTTTAGAATGCAGAAGAACTTCGC
AAGAAATTTGTCAATCACGAAGGAAAAAAAGAAATAGAAATCGAAAGACC
AACTTTTGTTAAAGGATCCAAAAACAACGACTGGCCTGGTGTTTTTCCTG
AATTTAGTGAAAAGATCGAAGCAAATACAGTTGAGGGGACTGTCAAATTG
ATTGAAAGCGATTTCTCAACGACTGGTCCTGTTGAAAAGATTGTAAGTTT
ATAAAGCTCGTTCATGTTGTCTTTTTATAGCAGTGCCGTAGATACCGGAG
TAGGAGGAAATCATGCTGTAAAGTTCAAAGCCATCGCACTTCGCGTTGTC
ATTGCAAACAAAATTTCATTCAAAATGACCATACTGTTACTATATCATGT
AGATTGTATCAATATCCTCTACCTTGAAATGATTTCTCTGATATAAGCCA
ACTTTTCGTTACCAGGTCTCACACATCACTTTGATGGATGCAGTCCAACA
TTATTTCTCATACAGCATGTGCTGTGGTTGTGGCTTTCCGGAGATCACCC
TCACCGGTGAACCGGATGACTGGAAGAAAATCCGGTCGAAAGCTGCACTG
TTGAAACAATATGGTCTTGAATGGTGGTTGAAAGCTTTGTTACCTGCTTT
GGATCAGTTCGTGCTTGCTTCTGAAGGAAAACCTGACTTGAATTTTTGGA
AATCACTTTGTAACATTAATGTAGGAACAAGTTTTCCTGTTTACGAGCCC
GTCACTGGCTGGATTCAGGTAATTTTCTTTCTATCATGTGACCTCGCTCT
CACTGTAGTTTTGTTAGTCAAGTTTTTTAAGATTAAAAATGTTTGCTTAA
AAATGTGCAAATCTCGCTAGAAAAATCAAAAAACCTTCCTTAAAACTTTT
GAAATATAGTAAAAACATATGTAACAGTACACTCTAGGGAAGGGGTTGAA
TATTTTGCACAATCAATTCACTTTCATTATCTTACTTCGTTTTCCAGGCT
TTCTTTCCCTACCTCAATGCTACAGGGTACGGTCTTGAAGATTTTGATCG
GTTTGCAGAAGCCAAAGATGGCGTCGCCAAGAAGCAATTACAGAAAAATG
AATGTCTTGAACACTATATGGAAAGCTTCCAGCAGAAGGTTTGTGTTATA
TTGTCTGTGTTATATTGTCTGTGTTTGTTTCATAAGTCTACTATTTTTCA
GCCCAGGAAAAAGAGAAGGCACCAAATCCTATTTCTACTGCACATTGGAA
GACTTATACATGTTTTTTTTTCTCATCATAACAAAGGTTGGCATAAAAGA
ATTTGAAGCTGATAAAAACAAGCCAAGAGATAGGGAAGAATTTCGTTTCG
CTGATCCACCCTCAGGGACCAAACGAGGTATCAAATTAAAATTATTTCCA
CCCGCCCTTTCTTCCGCCCCTTTCGTTTACAAAGACATGATGACCATGAA
AAAACATTCAATGGCGTTTATGGGTGGTTTAACCACCCTTGTTCAACACC
CTGATGGTGCAATTGAGCCAAAAATGGGATGGGCTGTCATGGATTCTGGC
AAATGGGAACAGATTAAATAAATTAAAAGACTCTTGAAACTGTTCAGTCA
CTTTTTGTAGTGTGTACTGATTCTTAAAACCAATTAAAAAGAAAAACTGA
AGACCTTGCTTTCTTTCTTCTTTAAAATGAGAATAGATTTATCATATTGT
AATTTATGTAATTAGAGGTATTTGATTTTTTGTATAATTTTGTAATATTT
TGTAACTTATTTTCCAATTATTGATTCCTACACAACTTTTTGCACACACA
ATGTAATGGTAGGAGAACTTAAGAACGCATATCTATTTTAAGACAATTTG
CGAGTATTTCATTCTCCACGATGCATATCTTCTGAGATATTGAAAGAGTT
TAGTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003593XLOC_003593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006297-exon-sc0000066-1575043694:191015..191164TCONS_00006297-exon-sc0000066-1575043694:191015..191164Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1575043694:190476..190580TCONS_00006297-exon-sc0000066-1575043694:190476..190580Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1575043694:189873..190082TCONS_00006297-exon-sc0000066-1575043694:189873..190082Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1575043694:189347..189649TCONS_00006297-exon-sc0000066-1575043694:189347..189649Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1575043694:188977..189117TCONS_00006297-exon-sc0000066-1575043694:188977..189117Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1575043694:188206..188828TCONS_00006297-exon-sc0000066-1575043694:188206..188828Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1510915933:191015..191164TCONS_00006297-exon-sc0000066-1510915933:191015..191164Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1510915933:190476..190580TCONS_00006297-exon-sc0000066-1510915933:190476..190580Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1510915933:189873..190082TCONS_00006297-exon-sc0000066-1510915933:189873..190082Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1510915933:189347..189649TCONS_00006297-exon-sc0000066-1510915933:189347..189649Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1510915933:188977..189117TCONS_00006297-exon-sc0000066-1510915933:188977..189117Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1510915933:188206..188828TCONS_00006297-exon-sc0000066-1510915933:188206..188828Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1491911889:191015..191164TCONS_00006297-exon-sc0000066-1491911889:191015..191164Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1491911889:190476..190580TCONS_00006297-exon-sc0000066-1491911889:190476..190580Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1491911889:189873..190082TCONS_00006297-exon-sc0000066-1491911889:189873..190082Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1491911889:189347..189649TCONS_00006297-exon-sc0000066-1491911889:189347..189649Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1491911889:188977..189117TCONS_00006297-exon-sc0000066-1491911889:188977..189117Clytia hemisphaericaexon
TCONS_00006297-exon-sc0000066-1491911889:188206..188828TCONS_00006297-exon-sc0000066-1491911889:188206..188828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:188206..191164 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.833	13.942	18.2854	16.3209	8.79482	5.38245	6.03616	6.10131	9.65297	12.5496	27.855	8.03407	36.5036	20.8789	9.37168	9.76221	5.59908	12.138	19.9337	24.5273	13.0384	13.162	13.004	16.0063	23.0526	27.7759	25.0355	26.8768	28.0272	19.8373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00006297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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