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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006049 ID=TCONS_00006049|Name=TCONS_00006049|organism=Clytia hemisphaerica|type=transcript|length=2979bpRun BLAST on NCBI protein sequence of TCONS_00006049-protein >TCONS_00006049-protein ID=TCONS_00006049-protein|Name=TCONS_00006049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=481bp MPRRFVRESKFRHVFGETYKRDLCYENLNITKNVWDGGRYCDVNSKFVAVRun BLAST on NCBI transcript from alignment at sc0000062:165484..174911- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006049 ID=TCONS_00006049|Name=TCONS_00006049|organism=Clytia hemisphaerica|type=transcript|length=9428bp|location=Sequence derived from alignment at sc0000062:165484..174911- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:165484..174911- >TCONS_00006049 ID=TCONS_00006049|Name=TCONS_00006049|organism=Clytia hemisphaerica|type=CDS|length=11568bp|location=Sequence derived from alignment at sc0000062:165484..174911- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006049 vs. Swiss-Prot (Human)
Match: COR2B (Coronin-2B OS=Homo sapiens GN=CORO2B PE=1 SV=4) HSP 1 Score: 424.091 bits (1089), Expect = 4.534e-137 Identity = 210/468 (44.87%), Postives = 320/468 (68.38%), Query Frame = 2
Query: 485 RESKFRHVFGETYKRDLCYENLNITKNVWDGGRYCDVNSKFVAVVLDSNSGSTFVVLPIEKTGRIDSNISKFEGHKGKVLDLQFNPFNANVLASAGEDGRIKIWNCPDGGITENRSETLCDLIGHRKKVGIIQWHPSADNVLASAGFDYDIIVWDVEKASPVRVISCHSDVINSMCWNFDGSFLATSSKDKKVRVIDPRKTEVEEQIVHEFNAHKGSKPVRVHFV-DEKRVVTIGTQRSAAREILLWNLDNVEEPITQHELDDGSGNLLTVYDAFLNILYVAAKGDCTIKYFEISKETPYVHYLSQYQSTTPQRGFGVLPKRAVKVNKCEVFRFYKMDS-KNLIEPISMVVPRKSDTFQQDIYPKVPGDTSALKADDWFSGQNADPVLISLKDGFVATKKEFIAVNTHQEENIFDVG---LKQAPAR-EEDLKKSFYAQQDXXXXXXXXXXXXXXXIRQLEYENKSLK 1870
R SKFR+V+G+ R+ C++ + ITKNV D +C VN++F+A+V +S G +F+V+P+E+TGRI+ N K GH+G VLD+++NPF N++AS ED ++IW P+GG+ N +E L +L GH ++VG+++WHP+ +N+L SAG+DY +++W+++ PV++I CH+DVI M +N DGS L T+ KDKK+RVI+PR V + E N K + RV F+ + KR++T G R R+I LW+ +++ P+ + E+D SG L YDA ++LY+A KGD I+Y+EIS E PY+ YL +++S PQ+G GV+PK + V+ CEVFRFYK+ + K LIEPISM+VPR+SD++Q+DIYP PG AL D+W G N DPVL+SLK+G+ + K +++++ G L+ P R E +L + F+ QQDE+ +L+E L K+++IRQL+ E K+L+
Sbjct: 13 RSSKFRNVYGKVANREHCFDGIPITKNVHDN-HFCAVNTRFLAIVTESAGGGSFLVIPLEQTGRIEPNYPKVCGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWEIPEGGLKRNMTEALLELHGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWNLDVGEPVKMIDCHTDVILCMSFNTDGSLLTTTCKDKKLRVIEPRSGRV----LQEANC-KNHRVNRVVFLGNMKRLLTTGVSRWNTRQIALWDQEDLSMPLIEEEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDSYQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEGYKKSSKMVFKAPIKEKKSVVVNGIDLLENVPPRTENELLRMFFRQQDEIRRLKEELAQKDIRIRQLQLELKNLR 474 The following BLAST results are available for this feature:
BLAST of TCONS_00006049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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