|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006005 ID=TCONS_00006005|Name=TCONS_00006005|organism=Clytia hemisphaerica|type=transcript|length=2212bpRun BLAST on NCBI protein sequence of TCONS_00006005-protein >TCONS_00006005-protein ID=TCONS_00006005-protein|Name=TCONS_00006005-protein|organism=Clytia hemisphaerica|type=polypeptide|length=432bp MAAIAGPSSSENVGDQIPIQVPVEQGETCFLYEPEFESLPLHIQSILKDLRun BLAST on NCBI transcript from alignment at sc0000062:373243..382059+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006005 ID=TCONS_00006005|Name=TCONS_00006005|organism=Clytia hemisphaerica|type=transcript|length=8817bp|location=Sequence derived from alignment at sc0000062:373243..382059+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:373243..382059+ >TCONS_00006005 ID=TCONS_00006005|Name=TCONS_00006005|organism=Clytia hemisphaerica|type=CDS|length=14289bp|location=Sequence derived from alignment at sc0000062:373243..382059+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006005 vs. Swiss-Prot (Human)
Match: MYNN (Myoneurin OS=Homo sapiens GN=MYNN PE=1 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 9.241e-23 Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 709 GEKLFKCKVCGETFKQAQSYSGHCRLHRGDHQKLYKCNMCNATYTTNSHLKYHMFKHTGDFPFTCTFCGKGFAGKSQLKYHELRHTGDAPHSCDDCGTTFWKLKGLTDHKSK 1044
GEK +KC++C + F Q H R+H G+ +K YKC++CN + T+S+LK H KH+G+ P+ C CG+ FA S L YH RHTG+ P+ CD CG F L H K
Sbjct: 354 GEKPYKCELCDKGFAQKCQLVFHSRMHHGE-EKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRK 464 HSP 2 Score: 91.6633 bits (226), Expect = 3.659e-19 Identity = 44/113 (38.94%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 706 NGEKLFKCKVCGETFKQAQSYSGHCRLHRGDHQKLYKCNMCNATYTTNSHLKYHMFKHTGDFPFTCTFCGKGFAGKSQLKYHELRHTGDAPHSCDDCGTTFWKLKGLTDHKSK 1044
+GEK + C CG+ F QA + + H R H G +K Y C+ C + +S L H KHTG+ P+ C CGK F +L H HTG+ P C+ CG ++ +K L HK+K
Sbjct: 410 SGEKPYVCDRCGQRFAQASTLTYHVRRHTG--EKPYVCDTCGKAFAVSSSLITHSRKHTGEKPYICGICGKSFISSGELNKHFRSHTGERPFICELCGNSYTDIKNLKKHKTK 520 HSP 3 Score: 83.1889 bits (204), Expect = 2.080e-16 Identity = 42/107 (39.25%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 727 CKVCGETFKQAQSYSGHCRLHRGDHQKLYKCNMCNATYTTNSHLKYHMFKHTGDFPFTCTFCGKGFAGKSQLKYHELRHTG-DAPHSCDDCGTTFWKLKGLTDHKSK 1044
C CG+ F +A S H R+H+G K Y C++C +T + LK H+ HTG+ P+ C C KGFA K QL +H H G + P+ CD C F L H K
Sbjct: 304 CNTCGKVFSEASSLRRHMRIHKG--VKPYVCHLCGKAFTQCNQLKTHVRTHTGEKPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARK 408 The following BLAST results are available for this feature:
BLAST of TCONS_00006005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.