XLOC_003429 (gene) - C. hemisphaerica

Overview
NameXLOC_003429
Unique NameXLOC_003429
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000062:373243..382059+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003429 ID=XLOC_003429|Name=XLOC_003429|organism=Clytia hemisphaerica|type=gene|length=8817bp|location=Sequence derived from alignment at sc0000062:373243..382059+ (Clytia hemisphaerica)
GTAAAGCCAGTATGAACTAGATAATTTCTATTCCAAAGCGAAAACATGGC GGCGATAGCGGGGCCaagttcaaggtttgttttgtattttgatttttagc atCACTTGCAGCACATTTTCCAGCAAATCGGCTAAGTCAGAAGTCAGTAT ACATTGGAAAGTTCAGCACAACAATCAAGTCCTTTTTCTCTCGATTTTAG TGAAAATGTTGGTGATCAAATTCCTATTCAAGTGCCAGTCGAACaaggtt tgtttttttgtcCATGAGGACCATGACCATGTTTTTCATCCTTGCTTGGA TTCAACGTCAATTTTCTCTTTCTGTCTGAGTTCTAACTAGCCCTTATACT CTTGTTCCCCCAACAAGCTCCCCTAACCTAACACTGATTAAAGGGCTCCC TAGCAGCAGTTTGCATGACCGacatgaatgcgtgaaaattgtaAAAGAAA TGGGTGAATGGTATGATggtgaatagaccttttttcaaagaggccaccct gttgaataattatgttgtccagcagaaaaacaatgataaaaccatgtata attattacaatatgcatgatacagtaattatgcatggctctatcattgtt tttattgctGGACTACACAATTATTCAGATTCGGCTAatgcttcagatgc atccggccGCGCGGGACGCGAAGCCACCCTGGTGCACATCCCTAACCCCT CACCCGGCCTGCGGTGCACCCACCTGGCGGTGCACACGTGTGGTGGCTTC TTCGGAGTAATGACGatcatataccgtgagattgggtaacttgcatcagt ggaggctaacttgcatagccctcaaatgaatgacctggctggtcattaaa atacaaagttaaatcaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNgcgagcagagctgcgtagttgtattttaatgaccagcca ggtcattcattcgagggctatgcatgttagcctccactgatgcaagttac ccaatttcacgataacagttagcctaactcgtcagtcaGACTTATTTATA TATAGTACTAAGACCTTCGTACAAGTAACCCCAAATAACGAATTTTCGGC AGCCGGTTTGGCCTAGTGGATAGGGCATTGGTTTCGGAACCTATGGGTTC CTGGTTCGAGACCCCCTTTGGTCACTAtccaacttgaaaaaaattctaag tccagccggatgcatctgaagcttTAGCAAAATGtcaattattcaacagg acgtcctctttgaaaaaaggtctattgaaaaacTTGCCACaagaaaatcc actttttgattgcgtgggTAGACCCCATCAATCTTACCAATAGCTTCACC CAAATAAATTTACTTGattgaaaaccttctgtcaggtttcaattctgtac attttttaactttgtggtggtatataaaccatcTGGtttttcccgataat taaaaattcaaactttccaTTGGACATGAGTGTCCATATTCCAGCGACAA AAaacattcacatggttaatgatttgtaagagggaaaacccgttgaactt tattagcaattgttcgaaaagatctctgagaaaacccagaaagatcttgc tctaaaatttacgttttcgagttagaaaattAACATatggaggagatatt ttcgtgttttttctacattatactgcgttctgtaaaatacaactatgaaa atcaaaatggcgacaagcaatttcagtggatcatggattttcttcatcat ccaaaattcaaatttacagctttctaccctttattttctggtagaaaatg gtatatttgttttgttgaaagtattatctttcaaattctccttattgtag cctctaaaattgacatttttcaaatattatgcattatgcaatatgcatta tgttttatgcattttggacctgccgaaTTTCTAAACCAATAATTATATAT ATGATAGATAttttgggccattccagaatttatCTGTAACAGGCAGCTGA ACGACACGGAATTTCTAAAGGCAAAAGCTTTCAccaaaattgaattaaaa acggCAACAAAGAGTGGAATATCCGACAGATTTTGcgaaagtacatggat tttcatctGAATTTCCtaccaccactggaaaaataattatttccgagtga agaaaaaatttgacaaTGTATGTCGTCCAATAGGGGTAAcagaaattttc tggaatggccctttgACCAAAAGttattaccgtcaactgctctaacttgg gactatctgacaagaTTGGGACTGCAATTCAGCCACCacttcaccgaacc tccaaagtcttttgatttgagTCAATGAACGGCCTATTGAAAAATACATG AGATCTCTTATTTCataccgagtaggcttttaaatcaaaaagaagaacaa attagtggcaaaacgatggagcgtttgacatcaCTCACGCAGCAACTTAC ATACACACTCATTATTTGTTGATCCCATCGGGTGATAGGGGGTTAGGCGG CAGgcttctctaattctccaattgaCGTCCggtcattttcaatgaaaaca aaaaagttaaaaagtgtgCTCTaacagtgaaagttatcgtgacatcgtga catggtatgacagaaagtatgattgataaacttgatggagttatcaaaac aaatttgttgtcaaagagatttaacagtaagtgaaaatacaggccggata tcaacagtcccatgtttcgaccaatcgtcccaagtcagagcagttgatgg tatcCCCCTATTTTTACTTGATCCCCCTAAAATCTCAAACTCCCCATTTT ATTCCGAAAATCTCCTATCCCCTATCCTTCCTATCCCACTTTTAGAAAAG TTGCATTGCCCTTAAAAGGGGGGTTCACACTATAGTGTCTGTTGATCCTA AAATCTCAGATTTGATAATGACTTGAGCTGGGTTTCTTCTTTTGCCTTGA AAATTGTAGCAGGGGGTATACATAGACCTTTTACTATTGACCTTTTACTA TTGACCTTTTACTATTGatgatgtcatgttgaataattaaaaactccaga ttTCTGGGAGGACTTGATCAGGTAGCAAGATGCTTTAAATTCAATTtcct tttctaaccttttttTAGGTGAAACTTGTTTTCTCTACGAACCTGAATTC GAGAGTTTGCCCCTACATATTCAAAGTATTTTAAAAGACCTCCAACAAGA GCTGGATGATGGTTAGTTTCTTTTCATTTAACTGATTATAAAAAATGGGC TGGTTGGCAATGGCTGGGTTTCCTTTTCTAACTCTGTTTTTACTGAAATT GAAGGAATGATattatcaaatttccaatgCTGTAAATGACTGGTTACTGA ACACTGATTATTAGAAAGAATCACATTCCTTGAAAGAGCTCTTAATGTAT CCAATAGAAATAACAGTAAGAAATTTCTAAGTACTTCTGAAGAATGAGAA TTGTATGAAAGAATGGGggattttaacaaaaaagagTCGCTATGATGATA GGTGGTAAAATTTGTGAGCCGAACAATTTTCATgaccaaatatttcaatt tttgacttttagggGACATCACTGATAAAGGCTACCAAAAGAGAAGAACA GCTATTATTGCACCCTTTTTGAAACAATGTAagtttttttggtataattc ttacggaaaaaaagaaaataagatcCTATATATTTTGACACTTCAGCCTA TTTTTGCAGAGGTTAAAACCTCTTTAATACCCCcaccttttcactttttt tgtataactaaaaacatagaaaaaatcCCCTTTCCTTTCcaatatatttt gttttttcgaaataatttttcacatcTGCTACAGCTTAAGATGGAAGTTT CTTCAGATTGAAAATGGTACTGGACTTGATTTGAAAAGGAGGTTATTGAC ACGTCTCTTTCTTTTAGATAAACCAGTGGTTGAAGAGTCACTGAAAGTTG AATTAGTGGAACCTTCCCTTGAAAAACTTCCAAAAACTGCTTTGAATGCA TTGAGTCTTCTGAAGGAAGAGCTTGATAATggtaaatttcatttcattgt tttcatcgTTCAGTCTGATTATTCCTACTCCGCCAATCAGATTTGATGGG TTATCACAGATCATTTTTTATAAGTATTatattaaagggataatcagatg gttttaGATATTTGACATATGAGTTCATGATCCATAAATTCCTCTGTATT CCTgagtaaaacctcaaaatattttgacgaactattttccaaagatattc gagctacaatttttgaagaaagaaaacgataagaacccattttcagaaat ttcaaaatgcctTATGTCTCGACTTTTCACAATAGTTGGAGGTATTACTC AGGTCAACAAAGGTTTCTGCAGGCTAAATATCACAAACCGATCATCCCTT TAATGATGCTTTCAAGAGAGAAGTTTAACTTCTAACTGAATTATTGCTAT AGTTCTGCTTTCAACATTTAGAGGAAATCACGGAGAAGGGATATAACAAG AAAAGAGCGAAGATTCTGGAACCCTATATGTTGAAAGGTATTTTAATGAT AACTCTTGAGTAAAGGAGAAAACCTAAACGTATGAATTTAACCACCCTGC CACGGTATTATTTATAAGCACTGTTTATCAATAATTATATAAGATTTCTT CCATCACACTGCACTTATGAaatctataaaaataatttttgttattaGTT TCATTTAAATTGTCTACAACACTATAATCCACTATAATAAACTATTACtc tattttttgatgttttcatgctgttattGTATGAGTCAATTTTGGCCTTT AAAGTAAGGTTCTTTCCCTcatattttggacattttttgaaCGTCTTGAG ATTAATATGTCCTAATTGCCTGGAACcttggaattttatttttattttag aaattagatATGCTAATTTAAAACTTGAGATACTTGTTTTTAAGGACAGT CGTCAAGACATTGGAAACTATCCGAAGTGAATTTCATTAAAACACTTTTC TTTTAGAGCCTTCAAGAGCTTCACTCCCAAGAGCAATTCAATTGAAATAC CAAGAGCTTGACCAAGAGTTACAAGACGGTGACATCACAGATAAAGGATA TCGCAAAAAGAGAATGAAACTAGTTCATCCTTATTTGGAAGCAGGTTAGG TTTGCAAGGTTTTCACGTATCATATAAAAACAAGTTCTTATCATTTTCAT ATTCTGAAGCAGCCAAAGGACAATTCAAAAACAACTGAAATGTACAAAGT AAAGTACAAACTCCCTAATTCGAAATGAAAGGAAAAACGAGCCATTTCAG CCGTAGAAATCTACTTTATTCTCCGATTCAAAGAAGATTCAGACATGTAC GGCTGCTATATTATAATATATTAACGttgtttctatttttcatttagtTC ATCCATCATCCTACAGACGTTCAAACAGTAAAAAGTTCTCAGCTGTAAAG GCTTCAGTGAAACAGCAGAGGAAAGGTCTGCAACATGAAAAACACATTAT GGAAAACGGTGAGAAGCTTTTCAAGTGTAAAGTATGTGGGGAAACATTCA AACAAGCACAAAGTTATAGTGGACACTGTCGATTACATAGAGGTAAGAAA ATTGTTAAGATTTTTAATAGCTAAACTAATTTTAATATAATCACTTCATA AAATTCCGAAATTCTAAAATTCTCGTTTATAATCCATGTGATACAGTAAT AAAGGTGTTATATTATGATATATGAATGTTCCTTCCCTTATTTTTTTGCG TATGTTCTACTTGGTCTGAATTACAAAAGCACTTGCATGGTAATTCACAT ATTCGTACAAACTTCCGAGAAGAGGTCAAGTAATGTTTGAGATTTACTTT TTTGCATTGACCTTTATCAGCTTTGTCGCTACCGTTAATGAAATAAATTG TACTTTACATTACAAGGAACAAAAGCCATCTACGTCGCAACAACGATACA ACTCTTCTTATTCTGCATCTTTATCTAAACTTCAGGTGACCATCAAAAGC TGTACAAATGTAACATGTGTAATGCTACCTACACTACCAACAGTCATCTC AAATATCACATGTTTAAACATACAGGCGATTTCCCTTTCACTTGCACGTT TTGTGGGAAAGGATTCGCTGGTAAAAGCCAACTTAAATATCATGAACTTC GACATACTGGTGAGTGAagtgaattcatgatatgcaccactgcatgGAGA GTCTTctcatagtttgcagaggggtatgaaccccctaggtttatttcatc ccccctatatacccatcccccccttttgtaatgaaatcttatccccccct tttttttgaaaaacataaacaaatatggtagacTAGAAGTGATTAGTCAA AATTcgattatcaaataaaaaacagaaacaAATATGGCAGACTAGAAGAA GTGATTGGGAAAGTAAAAAgttgtgttttgttttgatagtacatattttt tttactttaaaacacaaactgacaatttgtatttgattagaaaattgacc aaaatttccaaccccccccttttttatttgatccccacctacattcccat cccccctagtttttttcggcagatctcggtacccccccccctacaaaggc cctccagaaagttggcatcccccctattaaaaagggggggtgcaaactat gctTCTAACATCACATCAGATGtacccaacagctgattagttgcaagtga cgtattgactgattttacatcatttacaaccaatcagctgttgggtctat gGTGTGATCTTgaaaacattgcagtgatgcatatcatgaatatattaTTT ACGATGATGATAATATCATGTTCCAAGTTTTTTCAGGTTTTGCTTAAGTT ACGAAGCTTAAAGGAAAATCCACCATGATGGGAGCAAACGCTCAAATTTG TAGAGGCAATTCCCTCCGCGAATCGAATGTTTACTTCCCTAATGGCGTTA AAGTTACATAAGTTAGTTAAATTGAAAACCTCAATCTGAATTGACTTTTA AATAGACTTTGCTAATCTACCATCTGTCTATCAAGTTTGTCTCTTAAGAG ATCTCTTTACTTCTTGATTTGTGGTttatatgaaaataataaaataacag tGTAGTCCCCATAAATCGAACACGTACGAATTTTGTCCAACTTATGACAA ATTTAAACTCAACTGCACCTTCTTTTGTTTTAGGGGATGCACCACACAGT TGTGACGATTGTGGAACGACTTTTTGGAAATTGAAAGGCCTCACTGACCA CAAAAGTAAAGGATGTGTCAGTGATCGAAGTAGTATGGAAGAGTCCAACC AAGGAATGTCAAGCCAAAACATGATAGAGGTATAATTCGATGATTTGATT ATTCAACACTGCTAAAGCGGAAAAGATTGAAATCTAATATGTTCTTTCTA CTATGTGCCTGCGTCTTTTATTATAAACCTATTGATCAatttgaatgtct ttttttataatcAGAGATAATTTTTAGCCCTTAATGTGAGAAGAATCCAA GAACGCCAATAAGAAGAATTATTAGGCTGAAAAATAAAAggataagaaaa gaaaaaatctgaATTAAAAAGTCTTTCTTGAAAGTGAACTTCATGTAAGT TTTCCTTTTCATAATCAGATGAATAACGAAGAAAGTGATCGTTCAGATTT CGAAGACGCTGCAGAAGATGAAGACGATGAACCGCCCAGTATGACTACGC CCTCCACCCTTCATACATTTAGCGCCCTCACTTCACCCTCTTCAGAAAGC AGCAACAGCTCAAACCGTTATATTTCATTACCACAACCTGATGTGACAGC AGCTTTGATGAAATCTAAGCAAACCACTTTTAAAGCTGAAGAGTCATGAG GAATATTCATGAGTTTTATTTCGAGTATTGCTATAAACGAGTAATAATAA GATCCGTAATCAACCATATCCTACATTGATTATTGGTAGAAGCTTATCAA GACTTTTAGCTACATTTGTCATTGCCTTGAGACTGTTATTCAGTTGAATT GAtcatttaatttgaaatttcctcttGAAATATCTGATATCTCATTTAAC TGAAATCATTGAATACAGTTGTGTAGATTGTatatttttgtttctatttt gGTCATGGCTTGGAGCTTGCAAATCCTACATCGGTTATTGGTAGAAGAAT TCAACAAACTTAGCTGCACTGCACTGGCCATTGCTTTGAAACAGTTGATA TTCTTTGAGATTGATATCCAGAATTTAAAATTTCCTCTTAAAATTTCGTA AAAATCATTGCATAAAATGATTGTGgagatgttttttctttctcttttgg TCATTGCTTGGGTTCACTCCAGAATTTATCTACTCCATTTAACTTTATCA TAGGTAACAAACAGAtcatattatttttcattttgcttaaattttgtatt ttttaccaagaatgtttttactttttgttcTGTGTTTCTTTCTATTTCGC TTGTAGTTattgattttccattttttaatttcacagattgattttatata ttattattatagtTGTAGAGTGTATATTTATTTAGAAGTCAAGTCCCTTT AATGGATAAATTTGTGTGGGATTTTTTCGCGAATCAGATGTTTTTCAACT AATTTCTTCCATTTCTTCCATATTTCTTGGCAAAAACCCAGATTTTAACT GCGAGGGCTGAATTTCGCTAAAATAGCTTTTGATTCGCAAAAAGCTCGAA AATAAAATCCACCTAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006005TCONS_00006005Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006005-proteinTCONS_00006005-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:373243..382059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.55 17.38 5.68 4.3 55.97 46.39 34.57 36.41 24.08 26.55 18.77 20.27 15.34 16.39 12.55 14.06 18.44 20.05 12.13 13.65 16.17 17.24 25.26 25.55 19.3 22.22 13.8 13.87 16.34 18.65