TCONS_00005929 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005929
Unique NameTCONS_00005929
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005929 ID=TCONS_00005929|Name=TCONS_00005929|organism=Clytia hemisphaerica|type=transcript|length=1878bp
GATGAAAATTGGTTATGCATCATGTAGGAGAACAGaacaaaaatttcaca
aaatcttTCTCATCATCATCCTTACCTTAGCATTTACTGCCAGCTTGGCA
ACTCCACAAGCAAAATGCACTCCTTATACTGATTGCATCGAAAATCATTA
CGTCATTTACAAATCTCCATTAACTGTCCAATCAGAAAGCCGTTCCAATG
TGGAATTCTACCATCTCTACAATAATAGTTTCTCTCTCAAGGATCAAATC
TCATATCGTCTAAAATGGAAGATTTTCCAATTAAGCGGTGATTTTCCAGA
ATGTGACAAAGATTATGTTGCAGTTTTTACAGGGTGTGGTAGCAACCCAA
AGCAAGTTGCGACATTTTGTGGACGAACCATCCCACATGATATTTATTCA
CTTGATGGTTGTTTTACATTAAAATTGAAGAATGGACGAACTTACGGAAG
TAAATTTGAAGCGGAAATTGAATCATTACCTTTATCGAAATTGAATACTT
CTCTGTGTACTGAAGATCCAAGctCATACAATTCAAACAATAGTGTCATT
CTATCTCCTGGTTGGCCAGCAACATCTCCTAAGAATATATCCTCTTGTAC
GTGGAAAATCAGAGCAACAGAAAATAAAGTTACAgttctcaatttttttg
atCTGGATCTTCACGATGATACTATTCAATTTTCAGCAATCAACCTTTGG
TTTGTCACAAAGAATGCTTGCATCAAACTAAACAACGAAAGAACTTATGA
CAATATCCCATCTTTCACACAATGTCAAGAAAGGTGTGAAAAAGAATCTT
GGTGCAAGTCGATCGACTACAATacattacaaaaaaaatgtcaTCTCTCA
AAGTTGAACTCCTCGTCATCTGTTTATTACAACCCTTGCTATGTGACacc
aaatgattttttttacgcTGAAATCGGTAGAGgtaTCCATACTGGGTTGG
TGTCtcgaaaatttaatttcataatATCAAAAGACATGAAGAAAAATTAC
ACGATGTACATGACTTTTAATGAAGAAGTAGAAGTCAAATATTTACAAGA
TATTAACGCTAGGCAGGACAGGAAAACTAACCGGTTCGCTCTGGGATGGA
TGTTCATTGACACCTCTCTTCAATCGACATCCAACAGCAAGGAATCTTCT
TCAACCGACGGTGCATCAGTTGGTGGTATCATCTTCTTCTGTATCGTAGC
CTGTTTCTTCCTACAAGGATGTTATCGAAGAAATGGTGAAGGTGGGGGCT
GCACGGTACCAACATGCCCCCAACGAGCGACTAGAAGCCAACCTAGAAGC
CAACTTTGTAGCAGGAATTTTGCTATAGAAACACGTCGGTCATCTGTTGG
CAATCAAGACCAAACTAATACACGTAGATCCTCGATAGGGGATCAGGAGC
AAGCTGCTACTCCCAGATTAAGATCTAGAACTCTTAGTAATAGTAGTAGG
AGACATAGTTTTGCTTTGGAGATGCCGACTCCGGGAATTATGGAAATTGG
AGATGCAATGGGAATTGATAATATCGGTATGGAAATGCCTACACGAAACG
ACCCTTTCGATTCACTTCCAACGTACAATGACGTCATTCTTGGACCCAGT
CCTCCAAGTGAAGCACCTCAACATGACAAGGTGATGTTGCTGACGACAAA
ACAACAAAAGCATGAATTGTTAATTCTATTATGTCAGCATTATTTGAAAG
CCACGCACTATAAGGTATTATAATTAATTGCACTATTAAATAAACATATT
TATATTCTATagtttttacaatatttttaactttatttttctaTCACTTT
AGTCTATTGTACTATAAAATCTAAGAAGGAATTTTTTTACCTGAGGTAAA
AAACTAACAGATAAACCCACAAGTTACA
Run BLAST on NCBI

transcript from alignment at sc0000061:548559..553311-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005929 ID=TCONS_00005929|Name=TCONS_00005929|organism=Clytia hemisphaerica|type=transcript|length=4753bp|location=Sequence derived from alignment at sc0000061:548559..553311- (Clytia hemisphaerica)
GATGAAAATTGGTTATGCATCATGTAGGAGAACAGAACAAAAATTTCACA
AAATCTTTCTCATCATCATCCTTACCTTAGCATTTACTGCCAGCTTGGCA
ACTCCACAAGCAAAATGCACTCCTTATACTGATTGCATCGAAAATCATTA
CGTCATTTACAAATCTCCATTAACTGTCCAATCAGAAAGCCGTTCCAATG
TGGAATTCTACCATCTCTACAATAATAGTTTCTCTCTCAAGGATCAAATC
TCATATCGTCTAAAATGGAAGATTTTCCAATTAAGCGGTGATTTTCCAGA
ATGTGACAAAGATTATGTTGCAGTTTTTACAGGGTAAGATAGAATGACAT
CTTTATTTTCATCGTTTGTGATTTCAAGGAGGCCATATGAGTATACATGG
TACTCTAAATTTCTTTAACCTCTGCATCTCGAATGTGTCTTTTAAATCAG
GGCAAGTTTTCTGGTTCCTTCAATTAACAATGGCGTAAAAAATAAACCAA
TCATCCAATTTAGCCCATGTTCATACGTTACTATTCCGTTTCGCTCCGGT
AAGGTTTTCGTTACGGTTCGAGTGTATTCATATTGGTTTCGGAACGTTTC
GGAGCGTTTCGGAGCAAGAAAACGAAGCAGTTCCGTTCCGATGAAAAAAG
TGGAGCGAAAACATTTCGATCTGTTTTGCTTTGTAACGTCTTCTTTTTTG
ACGTTTCGAATTTTGACGTTCACACTTGTTTAGGAACCGTTTCGTTTCGG
AACGGAACGGAACCGTAACGTCTGGACATGGTCTTACTTTCACCGTACGT
TACGAAAACGCAGCTGATTTCCCTTTTACAGGTGTGGTAGCAACCCAAAG
CAAGTTGCGACATTTTGTGGACGAACCATCCCACATGATATTTATTCACT
TGATGGTTGTTTTACATTAAAATTGAAGAATGGACGAACTTACGGAAGTA
AATTTGAAGCGGAAATTGAATCATTACCTTTATCGAAATTGAATACTTCT
CTGTGTACTGAAGATCCAAGGTATTCACTTTTTAATGTTCTTAATTTGTT
CTTAATATTTTGATTCACAGTGCGCATTATTGATTTTTTGACGCTTTTCT
GGTGTGGATATGGGGACGAGACCGATACTGTACCAATAAGAGCATTAGTT
TTAACTGTTGGAGTTTTATTTCTTACATGTTTTTTTTTTATCAGAACAGC
CAAAGTTTTGAATACTTCGATTGTTCTTAATTTTTGAAGTTTAAGCCTAG
AAATTTTCTTGAAATGTTCTTAATTTCACCATTTTGTAAATATTTTTGTA
CAATTTCCTAAACCATTGTTCCAGCCCTAAAACGTTTCTTAGCTTGTTCT
TAACTTGTTCTTAATATTTTGTCCATCGAAATCTTAAATTCTTAAATAGT
TTGTTCTAAAAAACGAAGCTGTATTTACCCTTCAAACTTTTTTTTTTAGC
TCATACAATTCAAACAATAGTGTCATTCTATCTCCTGGTTGGCCAGCAAC
ATCTCCTAAGAATATATCCTCTTGTACGTGGAAAATCAGAGCAACAGAAA
ATAAAGTTACAGTTCTCAATTTTTTTGATCTGGATCTTCACGATGATACT
ATTCAATTTTCAGGTTAGAAAACTTGTTTTTTCTTCGTTTTGGGTCATTG
TGGACCATATCATGGGGTCCATATTGTGGACCATATCACGGGACCTTATT
GTGGGCCGTATCACGGGACCTTATTGTGGACCGTATCACGGGACCTTATT
GTGGACCATATCACGGGACCATATTGTGGACCATATCACGGGGCCTTATT
GTGGACCGTATCACGGGACCCTATTGTAGACCATATCACGGGACCTTATT
GGGGACCATTTCGATGGCCTTATTCACAAAATTATACAGACCATCCTATT
TTAATTTTAATACTTTTTTTTGTTTTTCACGTAAAAAAAGTCAAATTTAT
ATTTGTAATTTTTCAGAAAAATTTGCAGAGGTTTGTACTGAAAATTGACT
TAAAATACAATTCTATTGGACTAAAAAATTACATCTTTTTCTTAGCAATC
AACCTTTGGTTTGTCACAAAGAATGCTTGCATCAAACTAAACAACGAAAG
AACTTATGACAATATCCCATCTTTCACACAATGTCAAGAAAGGTGTGAAA
AAGAATCTTGGTGCAAGTCGATCGACTACAATACATTACAAAAAAAATGT
CATCTCTCAAAGTTGAACTCCTCGTCATCTGTTTATTACAACCCTTGCTA
TGTGACACCAAATGATTTTTTTTACGCTGAAATCGGTAGAGGTAAGATAA
AAGACTACACGAAAGAATAGACTGCACGCACCCCCCCCTGATTGAAATTA
TTTGATACAAGGGGCCGTCCATATAGTATATACGCAAAGAATTTCCAAAA
ATTCGATACCCCCTCCCCCTTGTACGCTGAGAACAATAGAAATGATGTAA
TTTAAATAATAGATACTGTATACGCTTTTGGTAAACCCCCCTCTCCCCCC
TTCACTGCGTACGTACTATATGGATGGCCCCCAAGGGGATGTAAATTGTG
TATAAAATTCCTGTCCGAGAGTTGCCCCGAATATGGGGTAACCTGTTTCA
ATTTTCTTTAAAAAAAGGTTTAGAAATCCAATATTGTTTTTACCTCTGAC
CATTCAAATTATCATCGTTTCTTTTCGATCTTATTTCGGTTTTTAGTTTG
CCTCAGATAGATTTCTTATTTCCGCCGATTCCCGTACTTTTTCGTCAATG
TCAAAAATAGCCAATTTACGTCTGAATCAGTAATTATTCTATCCAAGAGT
ATTTACTTTGACCTTTGTTTATTTTTTCAATTTTTAAGGTATCCATACTG
GGTTGGTGTCTCGAAAATTTAATTTCATAATATCAAAAGACATGAAGAAA
AATTACACGATGTACATGACTTTTAATGAAGAAGTAGAAGTCAAATATTT
ACAAGATATTAACGCTAGGCAGGACAGGAAAACTAACCGGTTCGCTCTGG
GATGGATGTTCATTGACACCTGTAAGTTAAATACTGTCGAGTCTCCGTAA
CTCTAACCCGCACGGAAAAGATGAATTCGTTCGAGTTAAATAAATTTCGA
GTTATATTGTTAATATAAGGGATTAGAAAACTTGTCAGAGTTTTAAGGAG
ACATTCGAGGTATAGAAGTTCGAGTTAAAGATACTCTACTGTACTTTTAC
TCTTGTGTTTGTGTGTTTGTCAGTCCTGGTTCTAAGGTCTCCGACACAAT
AGAAATACGCAGGTCCAAAATATTGTCACGGTGAAGAAGGTTTCACTTAA
GCGCCAAAACAACGAAAAGAAATACCCATAGATACCAAGGTGCCCACAAA
TCATCAAAGCGAGCTAATATCCATTCAGTGAGAGGTGAAATAAACGTTTT
TAAACCAAATGTTGCGTTTCAGGTGGTTGGGAAAGATAAATTTTGCTTTT
TGTTGAGATTTTTTCTTCTGTTTGCGTATTTTGCATTTCTCTGAATCTAA
TTCGACTTATACGAGCTTTAAAATCCACTCAAAGTTAAATTTCTTTCCGT
AGCTCTTCAATCGACATCCAACAGCAAGGAATCTTCTTCAACCGACGGTG
CATCAGTTGGTGGTATCATCTTCTTCTGTATCGTAGCCTGTTTCTTCCTA
CAAGGATGTTATCGAAGAAATGGTGAAGGTGGGGGCTGCACGGTACCAAC
ATGCCCCCAACGAGCGACTAGAAGCCAACCTAGAAGCCAACTTTGTAGCA
GGAATTTTGCTATAGAAACACGTCGGTCATCTGTTGGCAATCAAGACCAA
ACTAATACACGTAGATCCTCGATAGGGGATCAGGAGCAAGCTGCTACTCC
CAGATTAAGATCTAGAACTCTTAGTAATAGTAGTAGGAGACATAGTTTTG
CTTTGGAGATGCCGACTCCGGGAATTATGGAAATTGGAGATGCAATGGGA
ATTGATAATATCGGTATGGAAATGCCTACACGAAACGACCCTTTCGGTAA
GTGGTCAATAAGACATATAGTCGGCCATTTGTTAGTACAGTGCATTTAAG
GAAATGGTATATTTCACATATTTGTAACAACAAAAAGTACAGACTTAGCT
GACACCAAATGCCATTCTAAATCTTAAATCCTAACTACTTACGTATTCCT
GATATGCACCACTGCGATATCTTCCACGGACCCAACAGCTGATTGGTTGA
AAGTGTGACGTATTGACTGATTTTACGTCATTTACAACCAATCTATCAGC
TGTTGGGTCCGTGATGTAATTTAAGCTTTTACAATGCTTTGTAAAAAAAT
CTTTCTATCAATTTTTTTAGATTCACCGCCAGCGTACAATGACGTCACAC
TTGGACCGAGTCCTCCAAGTGAAGCACCTCCTCCATCTTATGACGAAGCT
CTCAACATGGCAAGGTGACGATGATGTTGTTTAGATTCACTTCCAACGTA
CAATGACGTCATTCTTGGACCCAGTCCTCCAAGTGAAGCACCTCAACATG
ACAAGGTGATGTTGCTGACGACAAAACAACAAAAGCATGAATTGTTAATT
CTATTATGTCAGCATTATTTGAAAGCCACGCACTATAAGGTATTATAATT
AATTGCACTATTAAATAAACATATTTATATTCTATAGTTTTTACAATATT
TTTAACTTTATTTTTCTATCACTTTAGTCTATTGTACTATAAAATCTAAG
AAGGAATTTTTTTACCTGAGGTAAAAAACTAACAGATAAACCCACAAGTT
ACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003374XLOC_003374Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005929-exon-sc0000061-1575043694:552979..553311TCONS_00005929-exon-sc0000061-1575043694:552979..553311Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1575043694:552292..552480TCONS_00005929-exon-sc0000061-1575043694:552292..552480Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1575043694:551699..551862TCONS_00005929-exon-sc0000061-1575043694:551699..551862Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1575043694:551021..551266TCONS_00005929-exon-sc0000061-1575043694:551021..551266Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1575043694:550291..550473TCONS_00005929-exon-sc0000061-1575043694:550291..550473Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1575043694:549316..549759TCONS_00005929-exon-sc0000061-1575043694:549316..549759Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1575043694:548559..548877TCONS_00005929-exon-sc0000061-1575043694:548559..548877Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:552979..553311TCONS_00005929-exon-sc0000061-1510915933:552979..553311Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:552292..552480TCONS_00005929-exon-sc0000061-1510915933:552292..552480Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:551699..551862TCONS_00005929-exon-sc0000061-1510915933:551699..551862Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:551021..551266TCONS_00005929-exon-sc0000061-1510915933:551021..551266Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:550291..550473TCONS_00005929-exon-sc0000061-1510915933:550291..550473Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:549316..549759TCONS_00005929-exon-sc0000061-1510915933:549316..549759Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1510915933:548559..548877TCONS_00005929-exon-sc0000061-1510915933:548559..548877Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:552979..553311TCONS_00005929-exon-sc0000061-1491911889:552979..553311Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:552292..552480TCONS_00005929-exon-sc0000061-1491911889:552292..552480Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:551699..551862TCONS_00005929-exon-sc0000061-1491911889:551699..551862Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:551021..551266TCONS_00005929-exon-sc0000061-1491911889:551021..551266Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:550291..550473TCONS_00005929-exon-sc0000061-1491911889:550291..550473Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:549316..549759TCONS_00005929-exon-sc0000061-1491911889:549316..549759Clytia hemisphaericaexon
TCONS_00005929-exon-sc0000061-1491911889:548559..548877TCONS_00005929-exon-sc0000061-1491911889:548559..548877Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:548559..553311 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00512215	0	0.814514	0.349845	0.754243	1.07933	3.66378	4.07023	0.538297	0.926046	0.316147	0.207699	0.127951	0.141787	0	0	1.22812	1.93949	0.222782	0.501114	3.2008	3.39701	1.96114	3.05684	4.4701	5.17534	5.44696	2.29928	0.191803	0.144052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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