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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005929 ID=TCONS_00005929|Name=TCONS_00005929|organism=Clytia hemisphaerica|type=transcript|length=1878bp GATGAAAATTGGTTATGCATCATGTAGGAGAACAGaacaaaaatttcaca aaatcttTCTCATCATCATCCTTACCTTAGCATTTACTGCCAGCTTGGCA ACTCCACAAGCAAAATGCACTCCTTATACTGATTGCATCGAAAATCATTA CGTCATTTACAAATCTCCATTAACTGTCCAATCAGAAAGCCGTTCCAATG TGGAATTCTACCATCTCTACAATAATAGTTTCTCTCTCAAGGATCAAATC TCATATCGTCTAAAATGGAAGATTTTCCAATTAAGCGGTGATTTTCCAGA ATGTGACAAAGATTATGTTGCAGTTTTTACAGGGTGTGGTAGCAACCCAA AGCAAGTTGCGACATTTTGTGGACGAACCATCCCACATGATATTTATTCA CTTGATGGTTGTTTTACATTAAAATTGAAGAATGGACGAACTTACGGAAG TAAATTTGAAGCGGAAATTGAATCATTACCTTTATCGAAATTGAATACTT CTCTGTGTACTGAAGATCCAAGctCATACAATTCAAACAATAGTGTCATT CTATCTCCTGGTTGGCCAGCAACATCTCCTAAGAATATATCCTCTTGTAC GTGGAAAATCAGAGCAACAGAAAATAAAGTTACAgttctcaatttttttg atCTGGATCTTCACGATGATACTATTCAATTTTCAGCAATCAACCTTTGG TTTGTCACAAAGAATGCTTGCATCAAACTAAACAACGAAAGAACTTATGA CAATATCCCATCTTTCACACAATGTCAAGAAAGGTGTGAAAAAGAATCTT GGTGCAAGTCGATCGACTACAATacattacaaaaaaaatgtcaTCTCTCA AAGTTGAACTCCTCGTCATCTGTTTATTACAACCCTTGCTATGTGACacc aaatgattttttttacgcTGAAATCGGTAGAGgtaTCCATACTGGGTTGG TGTCtcgaaaatttaatttcataatATCAAAAGACATGAAGAAAAATTAC ACGATGTACATGACTTTTAATGAAGAAGTAGAAGTCAAATATTTACAAGA TATTAACGCTAGGCAGGACAGGAAAACTAACCGGTTCGCTCTGGGATGGA TGTTCATTGACACCTCTCTTCAATCGACATCCAACAGCAAGGAATCTTCT TCAACCGACGGTGCATCAGTTGGTGGTATCATCTTCTTCTGTATCGTAGC CTGTTTCTTCCTACAAGGATGTTATCGAAGAAATGGTGAAGGTGGGGGCT GCACGGTACCAACATGCCCCCAACGAGCGACTAGAAGCCAACCTAGAAGC CAACTTTGTAGCAGGAATTTTGCTATAGAAACACGTCGGTCATCTGTTGG CAATCAAGACCAAACTAATACACGTAGATCCTCGATAGGGGATCAGGAGC AAGCTGCTACTCCCAGATTAAGATCTAGAACTCTTAGTAATAGTAGTAGG AGACATAGTTTTGCTTTGGAGATGCCGACTCCGGGAATTATGGAAATTGG AGATGCAATGGGAATTGATAATATCGGTATGGAAATGCCTACACGAAACG ACCCTTTCGATTCACTTCCAACGTACAATGACGTCATTCTTGGACCCAGT CCTCCAAGTGAAGCACCTCAACATGACAAGGTGATGTTGCTGACGACAAA ACAACAAAAGCATGAATTGTTAATTCTATTATGTCAGCATTATTTGAAAG CCACGCACTATAAGGTATTATAATTAATTGCACTATTAAATAAACATATT TATATTCTATagtttttacaatatttttaactttatttttctaTCACTTT AGTCTATTGTACTATAAAATCTAAGAAGGAATTTTTTTACCTGAGGTAAA AAACTAACAGATAAACCCACAAGTTACA Run BLAST on NCBI transcript from alignment at sc0000061:548559..553311- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005929 ID=TCONS_00005929|Name=TCONS_00005929|organism=Clytia hemisphaerica|type=transcript|length=4753bp|location=Sequence derived from alignment at sc0000061:548559..553311- (Clytia hemisphaerica) GATGAAAATTGGTTATGCATCATGTAGGAGAACAGAACAAAAATTTCACA
AAATCTTTCTCATCATCATCCTTACCTTAGCATTTACTGCCAGCTTGGCA
ACTCCACAAGCAAAATGCACTCCTTATACTGATTGCATCGAAAATCATTA
CGTCATTTACAAATCTCCATTAACTGTCCAATCAGAAAGCCGTTCCAATG
TGGAATTCTACCATCTCTACAATAATAGTTTCTCTCTCAAGGATCAAATC
TCATATCGTCTAAAATGGAAGATTTTCCAATTAAGCGGTGATTTTCCAGA
ATGTGACAAAGATTATGTTGCAGTTTTTACAGGGTAAGATAGAATGACAT
CTTTATTTTCATCGTTTGTGATTTCAAGGAGGCCATATGAGTATACATGG
TACTCTAAATTTCTTTAACCTCTGCATCTCGAATGTGTCTTTTAAATCAG
GGCAAGTTTTCTGGTTCCTTCAATTAACAATGGCGTAAAAAATAAACCAA
TCATCCAATTTAGCCCATGTTCATACGTTACTATTCCGTTTCGCTCCGGT
AAGGTTTTCGTTACGGTTCGAGTGTATTCATATTGGTTTCGGAACGTTTC
GGAGCGTTTCGGAGCAAGAAAACGAAGCAGTTCCGTTCCGATGAAAAAAG
TGGAGCGAAAACATTTCGATCTGTTTTGCTTTGTAACGTCTTCTTTTTTG
ACGTTTCGAATTTTGACGTTCACACTTGTTTAGGAACCGTTTCGTTTCGG
AACGGAACGGAACCGTAACGTCTGGACATGGTCTTACTTTCACCGTACGT
TACGAAAACGCAGCTGATTTCCCTTTTACAGGTGTGGTAGCAACCCAAAG
CAAGTTGCGACATTTTGTGGACGAACCATCCCACATGATATTTATTCACT
TGATGGTTGTTTTACATTAAAATTGAAGAATGGACGAACTTACGGAAGTA
AATTTGAAGCGGAAATTGAATCATTACCTTTATCGAAATTGAATACTTCT
CTGTGTACTGAAGATCCAAGGTATTCACTTTTTAATGTTCTTAATTTGTT
CTTAATATTTTGATTCACAGTGCGCATTATTGATTTTTTGACGCTTTTCT
GGTGTGGATATGGGGACGAGACCGATACTGTACCAATAAGAGCATTAGTT
TTAACTGTTGGAGTTTTATTTCTTACATGTTTTTTTTTTATCAGAACAGC
CAAAGTTTTGAATACTTCGATTGTTCTTAATTTTTGAAGTTTAAGCCTAG
AAATTTTCTTGAAATGTTCTTAATTTCACCATTTTGTAAATATTTTTGTA
CAATTTCCTAAACCATTGTTCCAGCCCTAAAACGTTTCTTAGCTTGTTCT
TAACTTGTTCTTAATATTTTGTCCATCGAAATCTTAAATTCTTAAATAGT
TTGTTCTAAAAAACGAAGCTGTATTTACCCTTCAAACTTTTTTTTTTAGC
TCATACAATTCAAACAATAGTGTCATTCTATCTCCTGGTTGGCCAGCAAC
ATCTCCTAAGAATATATCCTCTTGTACGTGGAAAATCAGAGCAACAGAAA
ATAAAGTTACAGTTCTCAATTTTTTTGATCTGGATCTTCACGATGATACT
ATTCAATTTTCAGGTTAGAAAACTTGTTTTTTCTTCGTTTTGGGTCATTG
TGGACCATATCATGGGGTCCATATTGTGGACCATATCACGGGACCTTATT
GTGGGCCGTATCACGGGACCTTATTGTGGACCGTATCACGGGACCTTATT
GTGGACCATATCACGGGACCATATTGTGGACCATATCACGGGGCCTTATT
GTGGACCGTATCACGGGACCCTATTGTAGACCATATCACGGGACCTTATT
GGGGACCATTTCGATGGCCTTATTCACAAAATTATACAGACCATCCTATT
TTAATTTTAATACTTTTTTTTGTTTTTCACGTAAAAAAAGTCAAATTTAT
ATTTGTAATTTTTCAGAAAAATTTGCAGAGGTTTGTACTGAAAATTGACT
TAAAATACAATTCTATTGGACTAAAAAATTACATCTTTTTCTTAGCAATC
AACCTTTGGTTTGTCACAAAGAATGCTTGCATCAAACTAAACAACGAAAG
AACTTATGACAATATCCCATCTTTCACACAATGTCAAGAAAGGTGTGAAA
AAGAATCTTGGTGCAAGTCGATCGACTACAATACATTACAAAAAAAATGT
CATCTCTCAAAGTTGAACTCCTCGTCATCTGTTTATTACAACCCTTGCTA
TGTGACACCAAATGATTTTTTTTACGCTGAAATCGGTAGAGGTAAGATAA
AAGACTACACGAAAGAATAGACTGCACGCACCCCCCCCTGATTGAAATTA
TTTGATACAAGGGGCCGTCCATATAGTATATACGCAAAGAATTTCCAAAA
ATTCGATACCCCCTCCCCCTTGTACGCTGAGAACAATAGAAATGATGTAA
TTTAAATAATAGATACTGTATACGCTTTTGGTAAACCCCCCTCTCCCCCC
TTCACTGCGTACGTACTATATGGATGGCCCCCAAGGGGATGTAAATTGTG
TATAAAATTCCTGTCCGAGAGTTGCCCCGAATATGGGGTAACCTGTTTCA
ATTTTCTTTAAAAAAAGGTTTAGAAATCCAATATTGTTTTTACCTCTGAC
CATTCAAATTATCATCGTTTCTTTTCGATCTTATTTCGGTTTTTAGTTTG
CCTCAGATAGATTTCTTATTTCCGCCGATTCCCGTACTTTTTCGTCAATG
TCAAAAATAGCCAATTTACGTCTGAATCAGTAATTATTCTATCCAAGAGT
ATTTACTTTGACCTTTGTTTATTTTTTCAATTTTTAAGGTATCCATACTG
GGTTGGTGTCTCGAAAATTTAATTTCATAATATCAAAAGACATGAAGAAA
AATTACACGATGTACATGACTTTTAATGAAGAAGTAGAAGTCAAATATTT
ACAAGATATTAACGCTAGGCAGGACAGGAAAACTAACCGGTTCGCTCTGG
GATGGATGTTCATTGACACCTGTAAGTTAAATACTGTCGAGTCTCCGTAA
CTCTAACCCGCACGGAAAAGATGAATTCGTTCGAGTTAAATAAATTTCGA
GTTATATTGTTAATATAAGGGATTAGAAAACTTGTCAGAGTTTTAAGGAG
ACATTCGAGGTATAGAAGTTCGAGTTAAAGATACTCTACTGTACTTTTAC
TCTTGTGTTTGTGTGTTTGTCAGTCCTGGTTCTAAGGTCTCCGACACAAT
AGAAATACGCAGGTCCAAAATATTGTCACGGTGAAGAAGGTTTCACTTAA
GCGCCAAAACAACGAAAAGAAATACCCATAGATACCAAGGTGCCCACAAA
TCATCAAAGCGAGCTAATATCCATTCAGTGAGAGGTGAAATAAACGTTTT
TAAACCAAATGTTGCGTTTCAGGTGGTTGGGAAAGATAAATTTTGCTTTT
TGTTGAGATTTTTTCTTCTGTTTGCGTATTTTGCATTTCTCTGAATCTAA
TTCGACTTATACGAGCTTTAAAATCCACTCAAAGTTAAATTTCTTTCCGT
AGCTCTTCAATCGACATCCAACAGCAAGGAATCTTCTTCAACCGACGGTG
CATCAGTTGGTGGTATCATCTTCTTCTGTATCGTAGCCTGTTTCTTCCTA
CAAGGATGTTATCGAAGAAATGGTGAAGGTGGGGGCTGCACGGTACCAAC
ATGCCCCCAACGAGCGACTAGAAGCCAACCTAGAAGCCAACTTTGTAGCA
GGAATTTTGCTATAGAAACACGTCGGTCATCTGTTGGCAATCAAGACCAA
ACTAATACACGTAGATCCTCGATAGGGGATCAGGAGCAAGCTGCTACTCC
CAGATTAAGATCTAGAACTCTTAGTAATAGTAGTAGGAGACATAGTTTTG
CTTTGGAGATGCCGACTCCGGGAATTATGGAAATTGGAGATGCAATGGGA
ATTGATAATATCGGTATGGAAATGCCTACACGAAACGACCCTTTCGGTAA
GTGGTCAATAAGACATATAGTCGGCCATTTGTTAGTACAGTGCATTTAAG
GAAATGGTATATTTCACATATTTGTAACAACAAAAAGTACAGACTTAGCT
GACACCAAATGCCATTCTAAATCTTAAATCCTAACTACTTACGTATTCCT
GATATGCACCACTGCGATATCTTCCACGGACCCAACAGCTGATTGGTTGA
AAGTGTGACGTATTGACTGATTTTACGTCATTTACAACCAATCTATCAGC
TGTTGGGTCCGTGATGTAATTTAAGCTTTTACAATGCTTTGTAAAAAAAT
CTTTCTATCAATTTTTTTAGATTCACCGCCAGCGTACAATGACGTCACAC
TTGGACCGAGTCCTCCAAGTGAAGCACCTCCTCCATCTTATGACGAAGCT
CTCAACATGGCAAGGTGACGATGATGTTGTTTAGATTCACTTCCAACGTA
CAATGACGTCATTCTTGGACCCAGTCCTCCAAGTGAAGCACCTCAACATG
ACAAGGTGATGTTGCTGACGACAAAACAACAAAAGCATGAATTGTTAATT
CTATTATGTCAGCATTATTTGAAAGCCACGCACTATAAGGTATTATAATT
AATTGCACTATTAAATAAACATATTTATATTCTATAGTTTTTACAATATT
TTTAACTTTATTTTTCTATCACTTTAGTCTATTGTACTATAAAATCTAAG
AAGGAATTTTTTTACCTGAGGTAAAAAACTAACAGATAAACCCACAAGTT
ACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005929-exon-sc0000061-1575043694:552979..553311 | TCONS_00005929-exon-sc0000061-1575043694:552979..553311 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1575043694:552292..552480 | TCONS_00005929-exon-sc0000061-1575043694:552292..552480 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1575043694:551699..551862 | TCONS_00005929-exon-sc0000061-1575043694:551699..551862 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1575043694:551021..551266 | TCONS_00005929-exon-sc0000061-1575043694:551021..551266 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1575043694:550291..550473 | TCONS_00005929-exon-sc0000061-1575043694:550291..550473 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1575043694:549316..549759 | TCONS_00005929-exon-sc0000061-1575043694:549316..549759 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1575043694:548559..548877 | TCONS_00005929-exon-sc0000061-1575043694:548559..548877 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:552979..553311 | TCONS_00005929-exon-sc0000061-1510915933:552979..553311 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:552292..552480 | TCONS_00005929-exon-sc0000061-1510915933:552292..552480 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:551699..551862 | TCONS_00005929-exon-sc0000061-1510915933:551699..551862 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:551021..551266 | TCONS_00005929-exon-sc0000061-1510915933:551021..551266 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:550291..550473 | TCONS_00005929-exon-sc0000061-1510915933:550291..550473 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:549316..549759 | TCONS_00005929-exon-sc0000061-1510915933:549316..549759 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1510915933:548559..548877 | TCONS_00005929-exon-sc0000061-1510915933:548559..548877 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:552979..553311 | TCONS_00005929-exon-sc0000061-1491911889:552979..553311 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:552292..552480 | TCONS_00005929-exon-sc0000061-1491911889:552292..552480 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:551699..551862 | TCONS_00005929-exon-sc0000061-1491911889:551699..551862 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:551021..551266 | TCONS_00005929-exon-sc0000061-1491911889:551021..551266 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:550291..550473 | TCONS_00005929-exon-sc0000061-1491911889:550291..550473 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:549316..549759 | TCONS_00005929-exon-sc0000061-1491911889:549316..549759 | Clytia hemisphaerica | exon |
TCONS_00005929-exon-sc0000061-1491911889:548559..548877 | TCONS_00005929-exon-sc0000061-1491911889:548559..548877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000061 | supercontig | sc0000061:548559..553311 - |
Blast
The following BLAST results are available for this feature:
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