TCONS_00005894 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005894
Unique NameTCONS_00005894
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1557

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005894 ID=TCONS_00005894|Name=TCONS_00005894|organism=Clytia hemisphaerica|type=transcript|length=1557bp
AATAGTCTATCTACAGACTACAAAATTTCAGCTCCTGCTGTTGATGCTGA
ATATGAGAGGGAGAAAAACAGTAGCAATAAAGCAAGAATTGATAATAAAG
CTAGTCTCCGTGTGGTTATAACTGATGTAAAAGAAGTTAATATGCAAAAA
GTTAAGGTGGCTGCAAGTTGCCCTGTATGTGGAAgagaatttaaaatgaa
acaaatgaaactaATTAGCCATCATTTGGTAAGAAAACATGGTTTTAAGG
TACGACAAGCTCTTATGGAGGAGGTCAAGCAGACACGATTGGCTAAGTGT
ATGAAACAGCACGGAGGAAAACATATTCTTCTGCCATGCGCAGTCGATCA
ATGCGACATGTGGTTTTGTAGCGATATGAGTTTTGAACAACATATGAGGA
TGAAACATTGTATGTCTATGCCTGATGTTTATAAAGCGAGAGACGAGTTA
ATTAAAAAACATTGGGATGGTAAAAAAGTACTCGTCAAAGAGATCTTATC
AGGAATTAGTACCAACAATAAAAGTACATTAAATTCTAACGCCAAATCCA
GTATGGAAGATTCAATGATATCTAAATCCAACACTGAAATCAGTACGCGA
AGACCTACTGAAAAGACAACAAATACATCCAAGTCTTCATCTTCAACCAG
TGCCGGTGAAGAAATAACTACTGAAGTTACAAGGACATCTAAGTCTAACG
CTGGAATGAGTGAACACATCACCACGGAACATACAAAGACATCTAAATGT
AACACTGGAAACATTATCACGGATTCTttcatgaaagaaaaaacacaaat
tgagaaaaaaaaataacactGATGCTAAGCAGGAACAACATTCAACTCAA
AAACCAACAGTTTATGGAGGAAAAGCAAACCCTATCACTATTGATATTGa
tttaattgaaaatgaaaCTCTCTCTCGAAATAAAATGAAgtcaaaaacca
aagaaaatatcAAGGACATCGAAAATAAGGAATTATTTGTGCTCAAAACT
CCGTCTAACTCAGTTGCTACGGAAATTAAACTCGATATATTTACGAAAAC
AACAAGCGAAGATCTTTCAAAATTGTCTGCGCCTTCTTTCGAAGCTGAGA
AAGAAGTTGGTAAAGGTAATAAAGGTTTTGTACTAAACACTAATGATGAA
AGTGCTAGCATTATATCTAAGTCGTTCGTTGGATCAGAAGCTTTGGAAAC
GGAATGTGATAGAAATTCTACCACGGATGTAAAAGAGAGTTTTCTGGAGA
CTGTGATCGCGGAGGAAAAAGAACTAAAATCGAGCACACGGGAAAATGCC
AGTGATCAAATAAAATCAACAGAAAATGGCGACGCTTTATTTGGGATTTC
ATGTGAGAAAGTTTCTTTAAAAGCAAAACGTGACGGAGATATCATTATGG
TTAATCAGAGTCGTCAAGAAATACCGGAGCCTTCGATTAAAGAAGAGGGA
GAAACAAGTGTCACCAATCTCTCGTGTAAAGACTCGTTTAAAGTTACAAC
GCAACCTTGTCAAACGCTGGAGGAATTGGTTCAAGATATTCAAAACATCA
CAACAAA
Run BLAST on NCBI

transcript from alignment at sc0000061:186471..189510-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005894 ID=TCONS_00005894|Name=TCONS_00005894|organism=Clytia hemisphaerica|type=transcript|length=3040bp|location=Sequence derived from alignment at sc0000061:186471..189510- (Clytia hemisphaerica)
AATAGTCTATCTACAGACTACAAAATTTCAGCTCCTGCTGTTGATGCTGA
ATATGAGAGGGAGAAAAACAGTAGCAATAAAGCAAGAATTGATAATAAAG
CTAGTCTCCGTGTGGTTATAACTGATGTAAAAGAAGTTAATATGCAAAAA
GTTAAGGTGGCTGNTCAGATTTGTAGAACGGCACCTGGAGTGTTTATTTT
CTCGCTGATTTTCTCGCTAAGAAGAAGAATTATTAATGCATTTAATGATT
AAACAGAAAAACGGTTTTTATTCTTAATGGAAGAGAATAATTCATTTGTC
CTTCTTTCAATGTTCAGGTACCAAAAGAAACGATCAGTTATAGAAGCTTT
AAAACAAGAACGCATCATAATCTGCAAACGAAAACATCACGGTGAACATA
TCATAATGCCATGTGAAGAATGTAGAATTTGGTTATGCTGGGATTCCCTT
ATCGACCACCTTCAGTTAAAGAAACATAACATGGATCGATTAGGTGCCAT
TGATTTCATGATCACATTAAAAAAGAAAATTTGGGGTCAAAATGCTCCTA
AAGCCAGAGACTTAGACGATTTTGGACGGCGTCTCCCAGCTGTGAATGAA
CAAAGTTCGTGTAAAGACAGCCAAAGAGCAGATATTTCCACGAATAATGC
CCAGAAAGATTCTAATTCACAAAAATCCATCACATACCTCCCATCATCCA
AAACTAACCCATCTCTATCTACACCTTCTATCGCTAGCAAACCAATTGTG
GCGATGAAGAAAAGCTTTATGAGCGACGCTTTAAGTTCACTCAAAAGTAC
TGGGTGCCCACCTATTAATAGTGCTTATACTACAATCAACCCTACGCTTT
TGAGAGAAGCTTTAAAGGATGATAAAGCACAATATGAGAAAGACTTTTCA
TTAACGAAAGATGTGAAAAGCAATGTCGGTGAAAAACGAAAATCGATTGT
TATTGACGATGATGAAGACACTAAAGTGATTAACATCCAGCCTTCAAATA
AATCAAAACGCTCTGAGCCTTCAAAGAGTAATTCCCAAACACTCGAGAAC
AATAGTCTATCTACAGACTACAAAATTTCAGCTCCTGCTGTTGATGCTGA
ATATGAGAGGGAGAAAAACATTAGCAATAAAGAAAGAATTGATAATAAAG
CTAGTCTCCGTGTGGTTATAACTGATGTAAAAGAAGTTAATATACAAAAA
GTTAAGGTGGCTGCAAGTTGCCCTGTATGTGGAAGAGAATTTAAAATGAA
ACAAATGAAACTAATTAGCCATCATTTGGTAAGAAAACATGGTTTTAAGG
TACGACAAGCTCTTATGGAGGAGGTNAATTTAAAATGAAACAAATGAAAC
TAATTAGCCATCATTTGGTAAGAAAACATGGTTTTAAGTTACGACAAGCT
CTTATGGAGGAGGTCAAGCAGACACGATTGGCTAAGTGTATGAAACAGCA
CGGAGGAAAACATATTCTTCTGCCATGCGCAGTCGATCAATGCGACATGT
GGTTTTGTAGCGATATGAGTTTTGAACAACATATGAGGATGAAACATTGT
ATGTCTATGCCTGATGTTTATAAAGCGAGAGACGAGTTAATTAAAAAACA
TTGGGATGGTAAAAAAGTACTCGTCAAAGAGATCTTATCAGGAATTAGTA
CCAACAATAAAAGTACATTAAATTCTAACGCCAAATCCAGTATGGAAGAT
TCAATGATATCTAAATCCAACACTGAAATCAGTACGCGAAGACCTACTGA
AAAGACAACAAATACATCCAAGTCTTCATCTTCAACCAGTGCCGGTGAAG
AAATAACTACTGAAGTTACAAGGACATCTAAGTCTAACGCTGGAATGAGT
GAACACATCACCACGGAACATACAAAGACATCTAAATGTAACACTGGAAA
CATTATCACGGATTCTTTCATGAAAGAAAAAACACAAATTGAGAAAAAAA
AATAACACTGATGCTAAGCAGGAACAACATTCAACTCAAAAACCAACAGT
TTATGGAGGAAAAGCAAACCCTATCACTATTGATATTGATTTAATTGAAA
ATGAAACTCTCTCTCGAAATAAAATGAAGTCAAAAACCAAAGAAAATATC
AAGGACATCGAAAATAAGGAATTATTTGTGCTCAAAACTCCGTCTAACTC
AGTTGCTACGGAAATTAAACTCGATATATTTACGAAAACAACAAGCGAAG
ATCTTTCAAAATTGTCTGCGCCTTCTTTCGAAGCTGAGAAAGAAGTTGGT
AAAGGTAATAAAGGTTTTGTACTAAACACTAATGATGAAAGTGCTAGCAT
TATATCTAAGTCGTTCGTTGGATCAGAAGCTTTGGAAACGGAATGTGATA
GAAATTCTACCACGGATGTAAAAGAGAGTTTTCTGGAGACTGTGATCGCG
GAGGAAAAAGAACTAAAATCGAGCACACGGGAAAATGCCAGTGATCAAAT
AAAATCAACAGAAAATGGCGACGCTTTATTTGGGATTTCATGTGAGAAAG
TTTCTTTAAAAGCAAAACGTGACGGAGATATCATTATGGTTAATCAGAGT
CGTCAAGAAATACCGGAGCCTTCGATTAAAGAAGAGGGAGAAACAAGTGT
CACCAATCTCTCGTGTAAAGACTCGTTTAAAGTTACAACGCAACCTTGTC
AAACGCTGGAGGTATATAAAACTATTTACTTGTTAGAAGAGATCCTCTTT
ACAATGTCCCATTGATCGATATTGTTTTCTATTTACTACCTGGGTAGGTT
TAAAGAATATTTGTTTATGTTTTTAACAATCAGCATCAATCGCGATCGAC
TTCTGATATTGAGTGAAGGCTGATAAGGAAGTAGAAAATGTAACGAGATT
TCTAATTTTGTCATTGCTTTCAAATTGGCGGATGGCTTTTGTTTCTGGGT
CTTACATGGAAACAAAGTTCTACCTTTCAATAAGAAGAGATTTGTCAAAA
CTCATTCAAGAACTCATTTTCTTTACTTAAGTAAATAAATTACCTTTTTA
CTCAGGAATTGGTTCAAGATATTCAAAACATCACAACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003362XLOC_003362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005894-exon-sc0000061-1575043694:189355..189510TCONS_00005894-exon-sc0000061-1575043694:189355..189510Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1575043694:188188..188304TCONS_00005894-exon-sc0000061-1575043694:188188..188304Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1575043694:186850..188098TCONS_00005894-exon-sc0000061-1575043694:186850..188098Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1575043694:186471..186505TCONS_00005894-exon-sc0000061-1575043694:186471..186505Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1510915933:189355..189510TCONS_00005894-exon-sc0000061-1510915933:189355..189510Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1510915933:188188..188304TCONS_00005894-exon-sc0000061-1510915933:188188..188304Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1510915933:186850..188098TCONS_00005894-exon-sc0000061-1510915933:186850..188098Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1510915933:186471..186505TCONS_00005894-exon-sc0000061-1510915933:186471..186505Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1491911889:189355..189510TCONS_00005894-exon-sc0000061-1491911889:189355..189510Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1491911889:188188..188304TCONS_00005894-exon-sc0000061-1491911889:188188..188304Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1491911889:186850..188098TCONS_00005894-exon-sc0000061-1491911889:186850..188098Clytia hemisphaericaexon
TCONS_00005894-exon-sc0000061-1491911889:186471..186505TCONS_00005894-exon-sc0000061-1491911889:186471..186505Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:186471..189510 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.7999	4.65398	3.5416	2.84794	2.71627	1.93108	2.96495	3.37252	0.473788	0.834324	0.971198	0.52144	0.141794	0.118103	1.34439	1.57766	0.679608	1.83471	0.159792	0.324007	1.36434	0.820738	5.93306	4.64302	1.04572	1.08374	0.449078	0.546699	3.23492	3.47254
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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