TCONS_00005883 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005883
Unique NameTCONS_00005883
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005883 ID=TCONS_00005883|Name=TCONS_00005883|organism=Clytia hemisphaerica|type=transcript|length=1452bp
ATCTTTTTGTCCCATTTAATTATCTCTGATTAttatcttttgttatttaa
aggtatttttacaGTGGTAACGGCAATTATTGTCATATTGGTCAACTTTT
AATGAGAGAAAGCTGCAAAAATTGATTGCTACCCATACATACATTTTATA
CAAAGAGGTGTTTCTTTCTTAATTTGCTGCAGAATCATTGTTTgttaaaa
gcaaaaaagaaaaccttCTTTTTACTGTAACTTTAAGAAGACGAAGACAA
TTTATGATGCAgttctttttgaaaacattctTATCAATTTTGATTTGTAA
AGGGGCATTTGCACAAGTGACTGGCAGTGCGAAAAGTGGTTGTATTGGAG
ACATTAATACACTAAGAAACCTTCATGTTAATACGCCCAACTTGGCCTGG
AGTGACACCCTAGCAACAGCTGCCCAGTCATGGGCGGAACATCTTGCTGC
ACAGGGCGAATTGGCTCATGCATCAAACAGTGAACGTAATGGAGACGGGG
AAAATCTATATCAATCGAAATCCATACGAAGTGCTTTGTGTGCAGATGCA
TTACTAGCGTGGTACAAAGAAGAGGCAAACTACAATTACATAACTGGCTC
ACCCACCATTGAAGGAAAGATTATTGGACATTTCACCCAGGTTGTTTGGA
AAGGAACGAAAACATTTGGAGTTGGCATAGCAACAAAGAATGTGATGTCC
GATGGTGATGTTTTAAAGGAGACCTACATCGTTGCTCGTTTTTCACCTGC
TGGTAATTATGATGGTCAATATGTCGCTAATGTTGGTCAACGCAAATCTG
GAGCTATAACACCAAGTCTCCATGAACTAGAAGCCAGTGTTTGTACCAAC
TTAAAAGCGGCTGGCTGGTGTGGTTACTTTCTTGATAACGCAAGTGCTCT
TCAAGAATACGGTGGTTGTAGTAATGCTGGTGTCCACCAAGGGTGCTACA
AAACATGTACTGGTTGTTGAAAGTTATCTTAGCCCTGGTTTTGCCCTGGT
TTGGACAAAACTCGTCTAAACGACGTCTCTTCTGATTTTGAAATTCATGT
CTTATTGATAAAAGCAACTCGTTAGTAATAAAATGTTCATCTAAACAGTC
CGTAACATACATAGACggtttcccaaaaaaaaagttaaaatttagaCTTA
CCCACACAACAAAATATTCTAATTACAGTTTCGTGTTCTGACACAGGGCT
TTTTTTTCGGGGAACCCTTTATGTAAGTGCTTCAACTTTTTCGTCTGTTC
GTCCGGTTGAATTTTTCAGCATTGATTTCATTAGCCCTTTTGGATGCTAA
ACAAAAATGTCTTCAAATATCATTATAATATACTTTATCAACGCCCCTAT
ATAACTTAGTTTGGCTCACTTTGGTTATTTTGTTTATATGGTATGTTTTA
AATTCTTagctttttagctttttttaaccgaaaaaaaatatattcaaaaa
ag
Run BLAST on NCBI

protein sequence of TCONS_00005883-protein

>TCONS_00005883-protein ID=TCONS_00005883-protein|Name=TCONS_00005883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MMQFFLKTFLSILICKGAFAQVTGSAKSGCIGDINTLRNLHVNTPNLAWS
DTLATAAQSWAEHLAAQGELAHASNSERNGDGENLYQSKSIRSALCADAL
LAWYKEEANYNYITGSPTIEGKIIGHFTQVVWKGTKTFGVGIATKNVMSD
GDVLKETYIVARFSPAGNYDGQYVANVGQRKSGAITPSLHELEASVCTNL
KAAGWCGYFLDNASALQEYGGCSNAGVHQGCYKTCTGC
Run BLAST on NCBI

transcript from alignment at sc0000061:1080174..1085305+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005883 ID=TCONS_00005883|Name=TCONS_00005883|organism=Clytia hemisphaerica|type=transcript|length=5132bp|location=Sequence derived from alignment at sc0000061:1080174..1085305+ (Clytia hemisphaerica)
ATCTTTTTGTCCCATTTAATTATCTCTGATTAttatcttttgttatttaa
aggtatttttacaGTGGTAACGGCAATTATTGTCATATTGGTCAACTTTT
AATGAGAGAAAGCTGCAAAAATTGATTGCTACCCATACATACATTTTATA
CAAAGAGGTGTTTCTTTCTTAATTTGCTGCAGAATCATTGTTTgttaaaa
gcaaaaaagaaaaccttCTTTTTACTGTAACTTTAAGAAGACGAAGACAA
TTTATGATGCAgttctttttgaaaacattctTATCAATTTTGATTTGTAA
AGGTAAGAGACCTTTTACTTTTCTTTCCTTTATAGTAAAAACCTTGAAGC
CTGTATTTATACCGGTAAGCGTATATCAGATTATTTGAACAAATGATAAT
CTACTTAGAACCCTTTTTTCCATCACTGTTGAGCTTAAAATTCtacttat
ttttttttgctgtttataGGGGCATTTGCACAAGTGACTGGCAGTGCGAA
AAGTAAGTACAGtggaccatagatttataaagcccgaagggctagatggc
gcgttttaagctcttccaagtaaaaaaaagtgaatatcgcaaaaaatatt
gctgctattgttttcgaaaaccctcgaagcttctgattggtcaagcgctg
aaattctattgtaatgtcacgtgactttggtaggatttcctacctaacct
cggcacacttttcagcaaaagcacgacatctagcccttcgggattttATA
AATCTACGCAGTGGACTCtcaattcgaacttctattattcgaatctttct
gtaattcaaaccAATCGACTATTATTGACATGGTGAATAACTCCCAGCGG
GTTATATTAAAAGTATtcttattcataaaaaaaatcatttaatgtctcaa
gagacataattaCCGACCATGgtaaattgtttgaatacgaggcaagtgat
gttcgtgacgtaatttttgaaaaggtctattctcggTCCCCGTCAAGGGG
AAACCCtcataaaatactctctattattcgaatctctctctaattcgaac
caaTTAGAACCCTGCTcgtcgagttcgaattagcgaaatCTATCTTTATT
GTTGAATTTTTTAAGTGTTCTCCTTACAACCTTATCACCTCCaataattt
ttgaattctttgccacggaaagtcatgtgacatctttttcaaccaatacg
atttgataatttcgagggtaaaacaaacactatggtttaactcactaaaa
gattatgtttactgaaaacacataattaatctttagtaagtgttctgttg
taccccagttctgacgtcatATCGTGGTGAagaataattttgaatttttc
aatttcaatttcaatttttgaaaatttcaatatcaaCCAAATAGCATAAa
tcctattcatgatatgcaccattgcaatgtcttccgacattacatcacag
acccaatagcttattggttggaaatgacgtattgactgatttttacgtca
cttactgttgggtccgtgaaagacattgcaatggtgcatatcatgaatat
atctTTTCTACACTTTTAAATTAATAAGGTGGTTGTATTGGAGACATTAA
TACACTAAGAAACCTTCATGTTAATACGCCCAACTTGGCCTGGNTGTATT
GGGGACATTAATACACTAAGAAACCTTCATGTTAATACGCCCAACTTGGC
CTGGAGTGACACCCTAGCAACAGCTGCCCAGTCATGGGCGGAACATCTTG
CTGCACAGGGCGAATTGGCTCATGCATCAAACAGTGAACGTAATGGAGAC
GGGGAAAATCTATATCAATCGAAATCCATACGAAGTGCTTTGTGTGCAGA
TGCATTACTAGCGTGGTAAGCAAAATTTGTTTTCTCttaaaaattcgttt
ttttgaTAAAGTCTTTACATGATAACTTTGCCTAAAAAGTATACACGATG
CAAATATTAATAATAGcgatttaaaatataaaaaagtccTAAGAGCTAAA
AACATTCGCAGGAGATAAAAGAAGACGTCGCTGTCTTTTTACCCATCCCC
ATCCTCTTTTCATAGTCAGGTTGCTCAGCATAGCAATCCTGTATTTGGTT
GAAAAGGTATGAAAGTTGGTATAGATAAAcctaattttattttgaatgaa
atataTTGACGGGAACACACCCAAAATCCACCACCtgattgctgacgtca
gcacttttttgtTGTCGTCATGAACATTTCCCTGGGATATTTTAGTCAAG
TTTTTAATTTAATCCACGTGTCTGGTTATACTGCTATTTTACATATCCTT
TGTCTGTTacaaaaaatagaaacacggtggtcaaaatccggcttttttag
ggtgcTTCCGTTAGAAAATACTGATGTCATTTTGatttacgcatatcaag
aatgaATCAAAGAAGTAAAGTTATTATTGATCTCCCCTTTGAGAAATTTA
CATACACtaagccccgggggggggggggcaaacaAGGTTAACGACCTACC
GTAGTagcggcccttaagggtcctttttccaagcttccttaagtgcactg
taaggccaaaatgagcaaagatgagaaaaagtacACTTTAAGGGTGTAAa
gtttggaaaatctgaccatattttgcctgaaaatggtcaaagattttcaa
gaatATACATCGTCCcttaagggtcgatttttcgcccaaattAACTCAAA
TTCCCCCAAATTTTCTCAGCactaagggtccgatttcaagtcctaatttt
gggccgcgtACGGTCGTTTTTTAATCGAGCGCCCCCCGAACTATGACACT
TACTAACCTCTTATTACCTTCATGTTCGTTTATCAGGTACAAAGAAGAGG
CAAACTACAATTACATAACTGGCTCACCCACCATTGAAGGAAAGATTATT
GGACATTTCACCCAGGTAacattttagacttttttgtcATCTTGACCTAG
GACCGTTGTTTTACAAAAGTTCAAGTTATTGGACGAGGTCTCAATACTTC
GCTCTTCGCAATAAAAAtactactctgtaccagagtttATATCTcgcgtt
tatcgcttcgtagtagaCTGTGTGCgtattgtctgtttgataaaaaaaat
tccggTGTGGAGTCCTCTGCGATGATGATTTATAAAtggcaacacttctc
tcatcttCGCCCCTCTCTCACCAAAACTCCATCGCAGTGGTCGGttttaa
aaatctcaaattgAAAAAGACAATGATAACCTCTACGATCAAGATTTATT
CACTTTGAGAAGAAAAAAGTAACTATGTTTATTTCGCTACCAATATGATT
TACTCGTCTAATAATCTCCTAACTTCTGATATTATGACAATTCTTGATAT
ACACGGCCGACTATCATCGTGTGTTAACATGTAACATTCTGAAATCCGTC
CTACTTTTAAGCTAGGTACAATAGACTCCCGGTTATGCAAAACTGcattt
attcaaaaaattcGTTACTTTGAAGTGAGATTGCGTTTCCCTTGGGTCTG
CTTACCCAACTCAGGCAAAAACACTCTCGGTTATTCGAACTTCAGTTAGT
CGAACTTTCTGTTATTCGAAGCGATTTTATTTCCCTTGGGTCGATTTTAG
GCCAAATCACCCTtagtaattcgaatttttcttctttggagATCTCGTCA
AGtgacaaaattgattttctgaGAACTCCCGTTTATGCGAAGTAAATTTT
TATCCCCCCTTGGAgtttcgatttagagagaggTGACATGTATTTATTAA
ATGTATCTTATAACAGGTTGTTTGGAAAGGAACGAAAACATTTGGAGTTG
GCATAGCAACAAAGAATGTGATGTCCGATGGTGATGTTTTAAAGGAGACC
TACATCGTTGCTCGTTTTTCACCTGCTGGTAATTATGATGGTCAATATGT
CGCTAATGTTGGTCAACGCAAATCTGGAGGTAGATgcgattttttttcta
aatttctttcACATATTGATTACAGAAAGCCATTAGATAGTAGAGGCGTC
ATGAGAAAAATGAGGAATGTTCTTTTCAGAAATTCTACTTTGATATTCGG
CAGAAAAGTGGTTCTCAATCTGGGGGTACttgggcaaaaaggggtacggA
GATGTGCCGCTGGGCAGCGTACCTTTTTCACCACCACAAATCCCATGATG
GATTGCAAAAACGCCTCGTTCGGCAATAGTAGTACCCCCAGGTCTCAACC
ATATGACAAACCCTCACACTCACCGCAAAaccttttcctgaaaaattagT
TACCTTATCACATTACAATTATTATCTTTCTCcaattctattattcgaat
cactctataattcgaattagaATATGGGTCTCTTCAGCTGGAAAGTctct
ggaaaattttcgtcattCGAATCTATATAATTCGGAAAAAATTCTTGGTC
ATTCAAAGATCAAATTACTTTNGAATCTatataattcgaaaaaaattctt
ggTCATTTAAAGATCAAATTACTTTTTTTGCAGCTATAACACCAAGTCTC
CATGAACTAGAAGCCAGTGTTTGTACCAACTTAAAAGCGGCTGGCTGGTG
TGGTTACTTTCTTGATAACGCAAGTGCTCTTCAAGAATACGGTGGTTGTA
GTAATGCTGGTGTCCACCAAGGGTGCTACAAAACATGTACTGGTTGTTGA
AAGTTATCTTAGCCCTGGTTTTGCCCTGGTTTGGACAAAACTCGTCTAAA
CGACGTCTCTTCTGATTTTGAAATTCATGTCTTATTGATAAAAGCAACTC
GTTAGTAATAAAATGTTCATCTAAACAGTCCGTAACATACATAGACggtt
tcccaaaaaaaaagttaaaatttagaCTTACCCACACAACAAAATATTCT
AATTACAGTTTCGTGTTCTGACACAGGGCTTTTTTTTCGGGGAACCCTTT
ATGTAAGTGCTTCAACTTTTTCGTCTGTTCGTCCGGTTGAATTTTTCAGC
ATTGATTTCATTAGCCCTTTTGGATGCTAAACAAAAATGTCTTCAAATAT
CATTATAATATACTTTATCAACGCCCCTATATAACTTAGTTTGGCTCACT
TTGGTTATTTTGTTTATATGGTATGTTTTAAATTCTTagctttttagctt
tttttaaccgaaaaaaaatatattcaaaaaag

Coding sequence (CDS) from alignment at sc0000061:1080174..1085305+

>TCONS_00005883 ID=TCONS_00005883|Name=TCONS_00005883|organism=Clytia hemisphaerica|type=CDS|length=5019bp|location=Sequence derived from alignment at sc0000061:1080174..1085305+ (Clytia hemisphaerica)
ATGATGCAgttctttttgaaaacattctTATCAATTTTGATTTGTAAAGG
GGCATTTGCACAAGTGACTGGCAGTGCGAAAAGTGGTTGTATTGGAGACA
TTAATACACTAAGAAACCTTCATGTTAATACGCCCAACTTGGCCTGGAGT
GACACCCTAGCAACAGCTGCCCAGTCATGGGCGGAACATCTTGCTGCACA
GGGCGAATTGGCTCATGCATCAAACAGTGAACGTAATGGAGACGGGGAAA
ATCTATATCAATCGAAATCCATACGAAGTGCTTTGTGTGCAGATGCATTA
CTAGCGTGGTACAAAGAAGAGGCAAACTACAATTACATAACTGGCTCACC
CACCATTGAAGGAAAGATTATTGGACATTTCACCCAGGTTGTTTGGAAAG
GAACGAAAACATTTGGAGTTGGCATAGCAACAAAGAATGTGATGTCCGAT
GGTGATGTTTTAAAGGAGACCTACATCGTTGCTCGTTTTTCACCTGCTGG
TAATTATGATGGTCAATATGTCGCTAATGTTGGTCAACGCAAATCTGGAG
CTATAACACCAAGTCTCCATGAACTAGAAGCCAGTGTTTGTACCAACTTA
AAAGCGGCTGGCTGGTGTGGTTACTTTCTTGATAACGCAAGTGCTCTTCA
AGAATACGGTGGTTGTAGTAATGCTGGTGTCCACCAAGGGTGCTACAAAA
CATGTACTGGTTGTTGAATGATGCAgttctttttgaaaacattctTATCA
ATTTTGATTTGTAAAGGGGCATTTGCACAAGTGACTGGCAGTGCGAAAAG
TGGTTGTATTGGAGACATTAATACACTAAGAAACCTTCATGTTAATACGC
CCAACTTGGCCTGGAGTGACACCCTAGCAACAGCTGCCCAGTCATGGGCG
GAACATCTTGCTGCACAGGGCGAATTGGCTCATGCATCAAACAGTGAACG
TAATGGAGACGGGGAAAATCTATATCAATCGAAATCCATACGAAGTGCTT
TGTGTGCAGATGCATTACTAGCGTGGTACAAAGAAGAGGCAAACTACAAT
TACATAACTGGCTCACCCACCATTGAAGGAAAGATTATTGGACATTTCAC
CCAGGTTGTTTGGAAAGGAACGAAAACATTTGGAGTTGGCATAGCAACAA
AGAATGTGATGTCCGATGGTGATGTTTTAAAGGAGACCTACATCGTTGCT
CGTTTTTCACCTGCTGGTAATTATGATGGTCAATATGTCGCTAATGTTGG
TCAACGCAAATCTGGAGCTATAACACCAAGTCTCCATGAACTAGAAGCCA
GTGTTTGTACCAACTTAAAAGCGGCTGGCTGGTGTGGTTACTTTCTTGAT
AACGCAAGTGCTCTTCAAGAATACGGTGGTTGTAGTAATGCTGGTGTCCA
CCAAGGGTGCTACAAAACATGTACTGGTTGTTGAATGATGCAgttctttt
tgaaaacattctTATCAATTTTGATTTGTAAAGGGGCATTTGCACAAGTG
ACTGGCAGTGCGAAAAGTGGTTGTATTGGAGACATTAATACACTAAGAAA
CCTTCATGTTAATACGCCCAACTTGGCCTGGAGTGACACCCTAGCAACAG
CTGCCCAGTCATGGGCGGAACATCTTGCTGCACAGGGCGAATTGGCTCAT
GCATCAAACAGTGAACGTAATGGAGACGGGGAAAATCTATATCAATCGAA
ATCCATACGAAGTGCTTTGTGTGCAGATGCATTACTAGCGTGGTACAAAG
AAGAGGCAAACTACAATTACATAACTGGCTCACCCACCATTGAAGGAAAG
ATTATTGGACATTTCACCCAGGTTGTTTGGAAAGGAACGAAAACATTTGG
AGTTGGCATAGCAACAAAGAATGTGATGTCCGATGGTGATGTTTTAAAGG
AGACCTACATCGTTGCTCGTTTTTCACCTGCTGGTAATTATGATGGTCAA
TATGTCGCTAATGTTGGTCAACGCAAATCTGGAGCTATAACACCAAGTCT
CCATGAACTAGAAGCCAGTGTTTGTACCAACTTAAAAGCGGCTGGCTGGT
GTGGTTACTTTCTTGATAACGCAAGTGCTCTTCAAGAATACGGTGGTTGT
AGTAATGCTGGTGTCCACCAAGGGTGCTACAAAACATGTACTGGTTGTTG
AATGATGCAgttctttttgaaaacattctTATCAATTTTGATTTGTAAAG
GGGCATTTGCACAAGTGACTGGCAGTGCGAAAAGTGGTTGTATTGGAGAC
ATTAATACACTAAGAAACCTTCATGTTAATACGCCCAACTTGGCCTGGAG
TGACACCCTAGCAACAGCTGCCCAGTCATGGGCGGAACATCTTGCTGCAC
AGGGCGAATTGGCTCATGCATCAAACAGTGAACGTAATGGAGACGGGGAA
AATCTATATCAATCGAAATCCATACGAAGTGCTTTGTGTGCAGATGCATT
ACTAGCGTGGTACAAAGAAGAGGCAAACTACAATTACATAACTGGCTCAC
CCACCATTGAAGGAAAGATTATTGGACATTTCACCCAGGTTGTTTGGAAA
GGAACGAAAACATTTGGAGTTGGCATAGCAACAAAGAATGTGATGTCCGA
TGGTGATGTTTTAAAGGAGACCTACATCGTTGCTCGTTTTTCACCTGCTG
GTAATTATGATGGTCAATATGTCGCTAATGTTGGTCAACGCAAATCTGGA
GCTATAACACCAAGTCTCCATGAACTAGAAGCCAGTGTTTGTACCAACTT
AAAAGCGGCTGGCTGGTGTGGTTACTTTCTTGATAACGCAAGTGCTCTTC
AAGAATACGGTGGTTGTAGTAATGCTGGTGTCCACCAAGGGTGCTACAAA
ACATGTACTGGTTGTTGAATGATGCAgttctttttgaaaacattctTATC
AATTTTGATTTGTAAAGGGGCATTTGCACAAGTGACTGGCAGTGCGAAAA
GTGGTTGTATTGGAGACATTAATACACTAAGAAACCTTCATGTTAATACG
CCCAACTTGGCCTGGAGTGACACCCTAGCAACAGCTGCCCAGTCATGGGC
GGAACATCTTGCTGCACAGGGCGAATTGGCTCATGCATCAAACAGTGAAC
GTAATGGAGACGGGGAAAATCTATATCAATCGAAATCCATACGAAGTGCT
TTGTGTGCAGATGCATTACTAGCGTGGTACAAAGAAGAGGCAAACTACAA
TTACATAACTGGCTCACCCACCATTGAAGGAAAGATTATTGGACATTTCA
CCCAGGTTGTTTGGAAAGGAACGAAAACATTTGGAGTTGGCATAGCAACA
AAGAATGTGATGTCCGATGGTGATGTTTTAAAGGAGACCTACATCGTTGC
TCGTTTTTCACCTGCTGGTAATTATGATGGTCAATATGTCGCTAATGTTG
GTCAACGCAAATCTGGAGCTATAACACCAAGTCTCCATGAACTAGAAGCC
AGTGTTTGTACCAACTTAAAAGCGGCTGGCTGGTGTGGTTACTTTCTTGA
TAACGCAAGTGCTCTTCAAGAATACGGTGGTTGTAGTAATGCTGGTGTCC
ACCAAGGGTGCTACAAAACATGTACTGGTTGTTGAATGATGCAgttcttt
ttgaaaacattctTATCAATTTTGATTTGTAAAGGGGCATTTGCACAAGT
GACTGGCAGTGCGAAAAGTGGTTGTATTGGAGACATTAATACACTAAGAA
ACCTTCATGTTAATACGCCCAACTTGGCCTGGAGTGACACCCTAGCAACA
GCTGCCCAGTCATGGGCGGAACATCTTGCTGCACAGGGCGAATTGGCTCA
TGCATCAAACAGTGAACGTAATGGAGACGGGGAAAATCTATATCAATCGA
AATCCATACGAAGTGCTTTGTGTGCAGATGCATTACTAGCGTGGTACAAA
GAAGAGGCAAACTACAATTACATAACTGGCTCACCCACCATTGAAGGAAA
GATTATTGGACATTTCACCCAGGTTGTTTGGAAAGGAACGAAAACATTTG
GAGTTGGCATAGCAACAAAGAATGTGATGTCCGATGGTGATGTTTTAAAG
GAGACCTACATCGTTGCTCGTTTTTCACCTGCTGGTAATTATGATGGTCA
ATATGTCGCTAATGTTGGTCAACGCAAATCTGGAGCTATAACACCAAGTC
TCCATGAACTAGAAGCCAGTGTTTGTACCAACTTAAAAGCGGCTGGCTGG
TGTGGTTACTTTCTTGATAACGCAAGTGCTCTTCAAGAATACGGTGGTTG
TAGTAATGCTGGTGTCCACCAAGGGTGCTACAAAACATGTACTGGTTGTT
GAATGATGCAgttctttttgaaaacattctTATCAATTTTGATTTGTAAA
GGGGCATTTGCACAAGTGACTGGCAGTGCGAAAAGTGGTTGTATTGGAGA
CATTAATACACTAAGAAACCTTCATGTTAATACGCCCAACTTGGCCTGGA
GTGACACCCTAGCAACAGCTGCCCAGTCATGGGCGGAACATCTTGCTGCA
CAGGGCGAATTGGCTCATGCATCAAACAGTGAACGTAATGGAGACGGGGA
AAATCTATATCAATCGAAATCCATACGAAGTGCTTTGTGTGCAGATGCAT
TACTAGCGTGGTACAAAGAAGAGGCAAACTACAATTACATAACTGGCTCA
CCCACCATTGAAGGAAAGATTATTGGACATTTCACCCAGGTTGTTTGGAA
AGGAACGAAAACATTTGGAGTTGGCATAGCAACAAAGAATGTGATGTCCG
ATGGTGATGTTTTAAAGGAGACCTACATCGTTGCTCGTTTTTCACCTGCT
GGTAATTATGATGGTCAATATGTCGCTAATGTTGGTCAACGCAAATCTGG
AGCTATAACACCAAGTCTCCATGAACTAGAAGCCAGTGTTTGTACCAACT
TAAAAGCGGCTGGCTGGTGTGGTTACTTTCTTGATAACGCAAGTGCTCTT
CAAGAATACGGTGGTTGTAGTAATGCTGGTGTCCACCAAGGGTGCTACAA
AACATGTACTGGTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003357XLOC_003357Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005883-proteinTCONS_00005883-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005883-exon-sc0000061-1491911889:1080174..1080475TCONS_00005883-exon-sc0000061-1491911889:1080174..1080475Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1080174..1080475TCONS_00005883-exon-sc0000061-1510915933:1080174..1080475Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1080174..1080475TCONS_00005883-exon-sc0000061-1575043694:1080174..1080475Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1491911889:1080643..1080675TCONS_00005883-exon-sc0000061-1491911889:1080643..1080675Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1080643..1080675TCONS_00005883-exon-sc0000061-1510915933:1080643..1080675Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1080643..1080675TCONS_00005883-exon-sc0000061-1575043694:1080643..1080675Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1491911889:1081752..1081768TCONS_00005883-exon-sc0000061-1491911889:1081752..1081768Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1081752..1081768TCONS_00005883-exon-sc0000061-1510915933:1081752..1081768Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1081752..1081768TCONS_00005883-exon-sc0000061-1575043694:1081752..1081768Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1491911889:1081830..1082038TCONS_00005883-exon-sc0000061-1491911889:1081830..1082038Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1081830..1082038TCONS_00005883-exon-sc0000061-1510915933:1081830..1082038Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1081830..1082038TCONS_00005883-exon-sc0000061-1575043694:1081830..1082038Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1491911889:1083010..1083088TCONS_00005883-exon-sc0000061-1491911889:1083010..1083088Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1083010..1083088TCONS_00005883-exon-sc0000061-1510915933:1083010..1083088Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1083010..1083088TCONS_00005883-exon-sc0000061-1575043694:1083010..1083088Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1491911889:1083940..1084102TCONS_00005883-exon-sc0000061-1491911889:1083940..1084102Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1083940..1084102TCONS_00005883-exon-sc0000061-1510915933:1083940..1084102Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1083940..1084102TCONS_00005883-exon-sc0000061-1575043694:1083940..1084102Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1491911889:1084657..1085305TCONS_00005883-exon-sc0000061-1491911889:1084657..1085305Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1510915933:1084657..1085305TCONS_00005883-exon-sc0000061-1510915933:1084657..1085305Clytia hemisphaericaexon
TCONS_00005883-exon-sc0000061-1575043694:1084657..1085305TCONS_00005883-exon-sc0000061-1575043694:1084657..1085305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:1080174..1085305 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.16508	7.15307	8.17614	7.90422	2.57887	2.46367	17.8706	17.3486	32.5902	26.8426	17.5815	32.8853	81.3396	106.038	51.9276	33.7419	5.95654	8.80651	5.09726	3.30194	2.40086	2.54401	3.33802	3.83806	0.0919329	0.0273493	0.273958	0.250607	1.20382	1.32333
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002413V5_allergen
IPR001283Allrgn_V5/Tpx1
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
IPR034113SCP_GAPR1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005883 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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