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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005873 ID=TCONS_00005873|Name=TCONS_00005873|organism=Clytia hemisphaerica|type=transcript|length=2144bp
TGCAGATTAAGTCGACTCTAGATTGATGGTTTAAATTGCTTAATTAATCA
ATTATCTACGGTAAATAGAGACGATGAAACCTTTCAAAACAATCCTTGTG
TTGATCTANTACATTCATTCCCCTTTTAGGTAAAGTAGAGACGATGAAAT
CTTACAAAGAAATCTTTGTGTTGGTCTGTGTTTACACAATCCTACCTGGT
ATCAAAGGAGGCGATCAGCCAATCAAAGTCGCCAATTTCGATCCACAACC
TGGAAAATGTAAATCCACTTACGAAGCGTTcgccaaatattttgaaaacg
cgaaagaagaagaagaagaacaaaagaagaaaggATCAGAACGCTTGAAT
GAAGAAATCACCAAAGATATCGATAATTTTGTTAAAGAAAATGGCGAAAG
TAGTATTTCGGAGAATCTACGAAACTACGTTGGTAAGACGGGCGGTGAGT
TTACGTCATGGGTTACGGCGATTGTAACGGCGTCTTACGCTGTAGCTGGA
GTCATGGCGACGACTGGTAAAGCGTTATCTATTGTGAGCCCCGGCGTTGG
TTTACTGTCGTGGATTTTCGGTGCGTATTCAACATATAAGGATGTGAAAg
ccaagaaaaaatttgttcaatCGATTCAACGGAATTTCCGTGCTTTGAAT
AATAAGATGGATTTGCAGTACGATGAATTGAAGGAGTACGTCGATGAGAG
TATCATTGATGTTGATCACCAGAGATTGATTGGTGTGCTAAGTCAAATGA
ACTTGGAGTTGTCTGACTGTTTATTGATAAGTGACGTTGGGAAGAGGGAA
GATTGTTTGTCCAGTAGGTGCAGTTCTGTTAAGGCTGGTTTTAAGGAGTT
TGCACTTTTTAGTGATATTTTGTCTGGCAGTTTGGTAGTGTCAGATGAGG
AGGAGCACGTACCTGATCAGACTCTGAGACGGATGAACGGGCAACGTATT
AAAAGGTTATTTGCTAATTTACCAATATTTAAGAGTTACGTGGCTACAGT
GTTGTTGAGGTGTGAGGCGTACCGTGTGGTGAAGAAACATATGAACGTGG
CAGGAGACGGGAAGGTTGTTAGTGACACGGCAGATATTTTTGACGTACTG
AGTCCGAATGAGAATGAATGGAACGTTGAGGAAGCAGTATTGACGTACCT
TAAGAATAGTATTGTTGTGATACACGATTCACAGAAAACGGTTGATAAGG
ACATTCTTTTGGGTTACGGTTGGGTTAAAGATGGCTCAAAGCCGAAGAAg
ggaaaaatcttcaaaaagtaTCCAACGAAAATCCAATGCCGCTTCAAGAT
GAATGCACATTTTAATGATATTTGTGATAGAGAATACGAGATTAATGATC
AAACAAGCTTTACGGATAAGGAGGTTGAACAGTTCTGTAGGGCAATGAGT
TATACGGAAAAAATCAGTTTCGACCAATCGATTGATCCGGTTAAATTTTC
CGATTTCGCCAAATTTGATCAGATTAAAGAGATGATGACAACACTTTACA
AAGGCCCGGGAAAGGAAGATGAACCAAAGCCCGTGGAACAAGCAGAAGTT
CTGATGGAGGAACAAAAGGAAAAGCCGAAAGAGGACCAAACGGAAAAGCC
GAAAGAAGACCAAGCggaaaaactgaaagaaaaacagCCGGAAAAGACGA
AAGACGAGCCAAAAAAGGTGAAGAAAGATGAACAAGTATCAGTGGAACTA
GAAACACGGAACGGAATGGAACCAAATGATGTTGGATCGGGTGAACAAGA
GACGGGAGCGGAAATATCACCAACTAACAACCCCGATCAACGCAACCGTA
TTAGAACCATCGTGAAAAGATGGAAAAActaaaagcaaaaaatattcgAT
AACCGATGatagaaaacaattttgaatttttcatcagTTTTACACTTACa
gtaaaaatttccaaaacaaaaaaagtgaaggTCTACACACACCCGATTTA
ACTTGAGAGGACCATGCTGTGGAAGGTTGTAGCTTTTGTAAATAGTATAT
GgcaaatatatcttttttttttgtggtGAATTTCAGGGAGGGGGTTAATC
TATGATTTTTGAAGCAATATTCTTTATAAGGAAATTAAGATTTTCCGTCA
TAATTTAGGTACCCTCTCAAATTCAACGCCGATTTCTACCTATT Run BLAST on NCBI transcript from alignment at sc0000061:1015226..1018144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005873 ID=TCONS_00005873|Name=TCONS_00005873|organism=Clytia hemisphaerica|type=transcript|length=2919bp|location=Sequence derived from alignment at sc0000061:1015226..1018144+ (Clytia hemisphaerica)
TGCAGATTAAGTCGACTCTAGATTGATGGTTTAAATTGCTTAATTAATCA
ATTATCTACGGTAAGAGCCCATTTAATGATAACcaattgtacaaaaaata
ttgaaaatattattttagcCTGTAACCATAGTCCGTTTAAAAAACCcagg
tctggaagccttttgtttctttccattgtttcttacttgaacttgcgttg
agaaattagtttgttttgctcactttttgatcatgtgattaaatcttaaa
ccaatctcAAGAggacttggtaacgtgatcaaaaactgagcaaatcgatt
ttcatctttcggtattaacaaagaaaaagctaacaaaaagttaaaacaat
aagcttccagaccagggttaTTTATAAGGACTATCCTGTAACATACCGAT
GTCATGTGAGattctttactttttgaagTTCGCGTTATCTTTTTAGAGCG
AAGAAGTTTGGTACTAGCTAGTGTTATTTGTTCTGAACTtctagtaTTCA
ATATCAGCCTCAGTTTCTGTTGTGTTTCAAAATTACCAGAAATGTGCCTG
CAGGGAAATGATGCCTGTGATTGAACAAGTTTTttataaaacatccaaaa
ttttagaaggcttcaaaaaagttctcaactttttgaattttaagctttca
aatgttctcaaaatgttcttaatttcacaattttgttattgttttgtgTA
ATTTCCTAAGAGATCAAGTGCTTTAGAGTTTATAAAGcattaaatgttct
taacttgctctcaGTATTTTGGCCAACGaatcatgttcttatataatttg
ttcttataaaaaacgtgcattcATTCTCTTTTTAGGTAAATAGAGACGAT
GAAACCTTTCAAAACAATCCTTGTGTTGATCTANTACATTCATTCCCCTT
TTAGGTAAAGTAGAGACGATGAAATCTTACAAAGAAATCTTTGTGTTGGT
CTGTGTTTACACAATCCTACCTGGTATCAAAGGAGGCGATCAGCCAATCA
AAGTCGCCAATTTCGATCCACAACCTGGAAAATGTAAATCCACTTACGAA
GCGTTcgccaaatattttgaaaacgcgaaagaagaagaagaagaacaaaa
gaagaaaggATCAGAACGCTTGAATGAAGAAATCACCAAAGATATCGATA
ATTTTGTTAAAGAAAATGGCGAAAGTAGTATTTCGGAGAATCTACGAAAC
TACGTTGGTAAGACGGGCGGTGAGTTTACGTCATGGGTTACGGCGATTGT
AACGGCGTCTTACGCTGTAGCTGGAGTCATGGCGACGACTGGTAAAGCGT
TATCTATTGTGAGCCCCGGCGTTGGTTTACTGTCGTGGATTTTCGGTGCG
TATTCAACATATAAGGATGTGAAAgccaagaaaaaatttgttcaatCGAT
TCAACGGAATTTCCGTGCTTTGAATAATAAGATGGATTTGCAGTACGATG
AATTGAAGGAGTACGTCGATGAGAGTATCATTGATGTTGATCACCAGAGA
TTGATTGGTGTGCTAAGTCAAATGAACTTGGAGTTGTCTGACTGTTTATT
GATAAGTGACGTTGGGAAGAGGGAAGATTGTTTGTCCAGTAGGTGCAGTT
CTGTTAAGGCTGGTTTTAAGGAGTTTGCACTTTTTAGTGATATTTTGTCT
GGCAGTTTGGTAGTGTCAGATGAGGAGGAGCACGTACCTGATCAGACTCT
GAGACGGATGAACGGGCAACGTATTAAAAGGTTATTTGCTAATTTACCAA
TATTTAAGAGTTACGTGGCTACAGTGTTGTTGAGGTGTGAGGCGTACCGT
GTGGTGAAGAAACATATGAACGTGGCAGGAGACGGGAAGGTTGTTAGTGA
CACGGCAGATATTTTTGACGTACTGAGTCCGAATGAGAATGAATGGAACG
TTGAGGAAGCAGTATTGACGTACCTTAAGAATAGTATTGTTGTGATACAC
GATTCACAGAAAACGGTTGATAAGGACATTCTTTTGGGTTACGGTTGGGT
TAAAGATGGCTCAAAGCCGAAGAAgggaaaaatcttcaaaaagtaTCCAA
CGAAAATCCAATGCCGCTTCAAGATGAATGCACATTTTAATGATATTTGT
GATAGAGAATACGAGATTAATGATCAAACAAGCTTTACGGATAAGGAGGT
TGAACAGTTCTGTAGGGCAATGAGTTATACGGAAAAAATCAGTTTCGACC
AATCGATTGATCCGGTTAAATTTTCCGATTTCGCCAAATTTGATCAGATT
AAAGAGATGATGACAACACTTTACAAAGGCCCGGGAAAGGAAGATGAACC
AAAGCCCGTGGAACAAGCAGAAGTTCTGATGGAGGAACAAAAGGAAAAGC
CGAAAGAGGACCAAACGGAAAAGCCGAAAGAAGACCAAGCggaaaaactg
aaagaaaaacagCCGGAAAAGACGAAAGACGAGCCAAAAAAGGTGAAGAA
AGATGAACAAGTATCAGTGGAACTAGAAACACGGAACGGAATGGAACCAA
ATGATGTTGGATCGGGTGAACAAGAGACGGGAGCGGAAATATCACCAACT
AACAACCCCGATCAACGCAACCGTATTAGAACCATCGTGAAAAGATGGAA
AAActaaaagcaaaaaatattcgATAACCGATGatagaaaacaattttga
atttttcatcagTTTTACACTTACagtaaaaatttccaaaacaaaaaaag
tgaaggTCTACACACACCCGATTTAACTTGAGAGGACCATGCTGTGGAAG
GTTGTAGCTTTTGTAAATAGTATATGgcaaatatatcttttttttttgtg
gtGAATTTCAGGGAGGGGGTTAATCTATGATTTTTGAAGCAATATTCTTT
ATAAGGAAATTAAGATTTTCCGTCATAATTTAGGTACCCTCTCAAATTCA
ACGCCGATTTCTACCTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005873-exon-sc0000061-1491911889:1015226..1015285 | TCONS_00005873-exon-sc0000061-1491911889:1015226..1015285 | Clytia hemisphaerica | exon |
| TCONS_00005873-exon-sc0000061-1510915933:1015226..1015285 | TCONS_00005873-exon-sc0000061-1510915933:1015226..1015285 | Clytia hemisphaerica | exon |
| TCONS_00005873-exon-sc0000061-1575043694:1015226..1015285 | TCONS_00005873-exon-sc0000061-1575043694:1015226..1015285 | Clytia hemisphaerica | exon |
| TCONS_00005873-exon-sc0000061-1491911889:1016061..1018144 | TCONS_00005873-exon-sc0000061-1491911889:1016061..1018144 | Clytia hemisphaerica | exon |
| TCONS_00005873-exon-sc0000061-1510915933:1016061..1018144 | TCONS_00005873-exon-sc0000061-1510915933:1016061..1018144 | Clytia hemisphaerica | exon |
| TCONS_00005873-exon-sc0000061-1575043694:1016061..1018144 | TCONS_00005873-exon-sc0000061-1575043694:1016061..1018144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:1015226..1018144 + |
Blast
The following BLAST results are available for this feature:
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