XLOC_003355 (gene) - C. hemisphaerica

Overview
NameXLOC_003355
Unique NameXLOC_003355
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000061:1015226..1019298+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003355 ID=XLOC_003355|Name=XLOC_003355|organism=Clytia hemisphaerica|type=gene|length=4073bp|location=Sequence derived from alignment at sc0000061:1015226..1019298+ (Clytia hemisphaerica)
TGCAGATTAAGTCGACTCTAGATTGATGGTTTAAATTGCTTAATTAATCA
ATTATCTACGGTAAGAGCCCATTTAATGATAACcaattgtacaaaaaata
ttgaaaatattattttagcCTGTAACCATAGTCCGTTTAAAAAACCcagg
tctggaagccttttgtttctttccattgtttcttacttgaacttgcgttg
agaaattagtttgttttgctcactttttgatcatgtgattaaatcttaaa
ccaatctcAAGAggacttggtaacgtgatcaaaaactgagcaaatcgatt
ttcatctttcggtattaacaaagaaaaagctaacaaaaagttaaaacaat
aagcttccagaccagggttaTTTATAAGGACTATCCTGTAACATACCGAT
GTCATGTGAGattctttactttttgaagTTCGCGTTATCTTTTTAGAGCG
AAGAAGTTTGGTACTAGCTAGTGTTATTTGTTCTGAACTtctagtaTTCA
ATATCAGCCTCAGTTTCTGTTGTGTTTCAAAATTACCAGAAATGTGCCTG
CAGGGAAATGATGCCTGTGATTGAACAAGTTTTttataaaacatccaaaa
ttttagaaggcttcaaaaaagttctcaactttttgaattttaagctttca
aatgttctcaaaatgttcttaatttcacaattttgttattgttttgtgTA
ATTTCCTAAGAGATCAAGTGCTTTAGAGTTTATAAAGcattaaatgttct
taacttgctctcaGTATTTTGGCCAACGaatcatgttcttatataatttg
ttcttataaaaaacgtgcattcATTCTCTTTTTAGGTAAATAGAGACGAT
GAAACCTTTCAAAACAATCCTTGTGTTGATCTANTACATTCATTCCCCTT
TTAGGTAAAGTAGAGACGATGAAATCTTACAAAGAAATCTTTGTGTTGGT
CTGTGTTTACACAATCCTACCTGGTATCAAAGGAGGCGATCAGCCAATCA
AAGTCGCCAATTTCGATCCACAACCTGGAAAATGTAAATCCACTTACGAA
GCGTTcgccaaatattttgaaaacgcgaaagaagaagaagaagaacaaaa
gaagaaaggATCAGAACGCTTGAATGAAGAAATCACCAAAGATATCGATA
ATTTTGTTAAAGAAAATGGCGAAAGTAGTATTTCGGAGAATCTACGAAAC
TACGTTGGTAAGACGGGCGGTGAGTTTACGTCATGGGTTACGGCGATTGT
AACGGCGTCTTACGCTGTAGCTGGAGTCATGGCGACGACTGGTAAAGCGT
TATCTATTGTGAGCCCCGGCGTTGGTTTACTGTCGTGGATTTTCGGTGCG
TATTCAACATATAAGGATGTGAAAgccaagaaaaaatttgttcaatCGAT
TCAACGGAATTTCCGTGCTTTGAATAATAAGATGGATTTGCAGTACGATG
AATTGAAGGAGTACGTCGATGAGAGTATCATTGATGTTGATCACCAGAGA
TTGATTGGTGTGCTAAGTCAAATGAACTTGGAGTTGTCTGACTGTTTATT
GATAAGTGACGTTGGGAAGAGGGAAGATTGTTTGTCCAGTAGGTGCAGTT
CTGTTAAGGCTGGTTTTAAGGAGTTTGCACTTTTTAGTGATATTTTGTCT
GGCAGTTTGGTAGTGTCAGATGAGGAGGAGCACGTACCTGATCAGACTCT
GAGACGGATGAACGGGCAACGTATTAAAAGGTTATTTGCTAATTTACCAA
TATTTAAGAGTTACGTGGCTACAGTGTTGTTGAGGTGTGAGGCGTACCGT
GTGGTGAAGAAACATATGAACGTGGCAGGAGACGGGAAGGTTGTTAGTGA
CACGGCAGATATTTTTGACGTACTGAGTCCGAATGAGAATGAATGGAACG
TTGAGGAAGCAGTATTGACGTACCTTAAGAATAGTATTGTTGTGATACAC
GATTCACAGAAAACGGTTGATAAGGACATTCTTTTGGGTTACGGTTGGGT
TAAAGATGGCTCAAAGCCGAAGAAgggaaaaatcttcaaaaagtaTCCAA
CGAAAATCCAATGCCGCTTCAAGATGAATGCACATTTTAATGATATTTGT
GATAGAGAATACGAGATTAATGATCAAACAAGCTTTACGGATAAGGAGGT
TGAACAGTTCTGTAGGGCAATGAGTTATACGGAAAAAATCAGTTTCGACC
AATCGATTGATCCGGTTAAATTTTCCGATTTCGCCAAATTTGATCAGATT
AAAGAGATGATGACAACACTTTACAAAGGCCCGGGAAAGGAAGATGAACC
AAAGCCCGTGGAACAAGCAGAAGTTCTGATGGAGGAACAAAAGGAAAAGC
CGAAAGAGGACCAAACGGAAAAGCCGAAAGAAGACCAAGCggaaaaactg
aaagaaaaacagCCGGAAAAGACGAAAGACGAGCCAAAAAAGGTGAAGAA
AGATGAACAAGTATCAGTGGAACTAGAAACACGGAACGGAATGGAACCAA
ATGATGTTGGATCGGGTGAACAAGAGACGGGAGCGGAAATATCACCAACT
AACAACCCCGATCAACGCAACCGTATTAGAACCATCGTGAAAAGATGGAA
AAActaaaagcaaaaaatattcgATAACCGATGatagaaaacaattttga
atttttcatcagTTTTACACTTACagtaaaaatttccaaaacaaaaaaag
tgaaggTCTACACACACCCGATTTAACTTGAGAGGACCATGCTGTGGAAG
GTTGTAGCTTTTGTAAATAGTATATGgcaaatatatcttttttttttgtg
gtGAATTTCAGGGAGGGGGTTAATCTATGATTTTTGAAGCAATATTCTTT
ATAAGGAAATTAAGATTTTCCGTCATAATTTAGGTACCCTCTCAAATTCA
ACGCCGATTTCTACCTATTACATCTAATATCTATTATGTATAATTATGTA
GTTTGATTTTGCGAAATAGAATTAAACCAAACATGTGCTTACTTTCATCA
CTGTATGTCATCTGTAATACTGAGCTTTTCGCATACTTTTTCTGTTTCGA
TNCGTTGAGGAAGCAGTATTGACGTACCTTAAGAATAGTATTGTTGTGAT
ACACGATTCACAGAAAACGGTTGATAAGGACATTCTTTTGGGTTACGGTT
GGGTTAAAGATGGCTCAAAGCCGAAGAAgggaaaaatcttcaaaaagtaT
CCAACGAAAATCCAATGCCGCTTCAAGATGAATGCACATTTTAATGATAT
TTGTGATAGAGAATACGAGATTAATGATCAAACAAGCTTTACGGATAAGG
AGGTTGAACAGTTCTGTAGGGCAATGAGTTATACGGAAAAAATCAGTTTC
GACCAATCGATTGATCCGGTTAAATTTTCCGATTTCGCCAAATTTGATCA
GATTAAAGAGATGATGACAACACTTTACAAAGGCCCGGGAAAGGAAGATG
AACCAAAGCCCGTGGAACAAGCAGAAGTTCTGATGGAGGAACAAAAGGAA
AAGCCGAAAGAGGACCAAACGGAAAAGCCGAAAGAAGACCAAGCggaaaa
actgaaagaaaaacagCCGGAAAAGACGAAAGACGAGCCAAAAAAGGTGA
AGAAAGATGAACAAGTATCAGTGGAACTAGAAACACGGAACGGAATGGAA
CCAAATGATGTTGGATCGGGTGAACAAGAGACGGGAGCGGAAATATCACC
AACTAACAACCCCGATCAACGCAACCGTATTAGAACCATCGTGAAAAGAT
GGAAAAActaaaagcaaaaaatattcgATAACCGATGatagaaaacaatt
ttgaatttttcatcagTTTTACACTTACagtaaaaatttccaaaacaaaa
aaagtgaaggTCTACACACACCCGATTTAACTTGAGAGGACCATGCTGTG
GAAGGTTGTAGCTTTTGTAAATAGTATATGgcaaatatatcttttttttt
tgtggtGAATTTCAGGGAGGGGGTTAATCTATGATTTTTGAAGCAATATT
CTTTATAAGGAAATTAAGATTTTCCGTCATAATTTAGGTACCCTCTCAAA
TTCAACGCCGATTTCTACCTATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005873TCONS_00005873Clytia hemisphaericatranscript
TCONS_00005874TCONS_00005874Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005874-proteinTCONS_00005874-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:1015226..1019298 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.05	0	0	0.27	0.27	0.64	0.88	0.6	0.21	5.16	7.74	14.93	10.64	6.68	19.52	6.41	5.67	0	0.02	4.25	7.29	3.36	3.94	6.95	10.28	6.31	1.66	0.04	0.06