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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005832 ID=TCONS_00005832|Name=TCONS_00005832|organism=Clytia hemisphaerica|type=transcript|length=5897bpRun BLAST on NCBI protein sequence of TCONS_00005832-protein >TCONS_00005832-protein ID=TCONS_00005832-protein|Name=TCONS_00005832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1800bp MKCIFGSSFYPLFWAWLLALLLTGPILIDGRSYKGLTRPHSSPNEKNVKRRun BLAST on NCBI transcript from alignment at sc0000061:136006..148151+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005832 ID=TCONS_00005832|Name=TCONS_00005832|organism=Clytia hemisphaerica|type=transcript|length=12146bp|location=Sequence derived from alignment at sc0000061:136006..148151+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000061:136006..148151+ >TCONS_00005832 ID=TCONS_00005832|Name=TCONS_00005832|organism=Clytia hemisphaerica|type=CDS|length=118800bp|location=Sequence derived from alignment at sc0000061:136006..148151+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00005832 vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.449e-21 Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 3
Query: 2049 CSSKLDLAFVIDAGAGSEQGGKEKMAETMEFGRRVASAFKVTPEETRVGLITYATDAQVMMNFHRYADPDAIVEARDAVRVKPHTG--KYTGQALDLAKEGLF--DSGHRADALDVAVLLTDGPSSDDVTLPARKLRDMGVKIITVGIGPEVDRGQLNDIASDPDEEHVF-TADYDSLATIIGRTQRAACVG 2609
S+ DL F++D GS G+ ++F + SAF + E+TRVG++ Y++D + N ++Y D E A++ P+ G TG A+D + F +G R VA+++TDG S D+V +PAR+LR++GV++ ++GI D +L IAS P HVF A++D++ I C G
Sbjct: 135 VSAWTDLVFLVD---GSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRD---ELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIK-AADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSG 319 HSP 2 Score: 91.6633 bits (226), Expect = 4.517e-18 Identity = 69/247 (27.94%), Postives = 112/247 (45.34%), Query Frame = 3
Query: 2058 KLDLAFVIDAGAGSEQGGKEKMAETMEFGRRVASAFKVTPEETRVGLITYATDAQVMMNFHRYADPDAIVEARDAVRVKPHTG--KYTGQALDLAKEGLF--DSGHRADALDVAVLLTDGPSSDDVTLPARKLRDMGVKIITVGIGPEVDRGQLNDIASDPDEEHVFTA-DYDSLATIIGRTQRAACVGGMLHEPVDKCKCNMYVKNDDKAEEELDKETAAFYNVYKTAVEASPRDANAVKYNTIYR 2783
K D+ F++D GS G + F + +F+++P ++ L+ Y+ D ++ + I+EA + P+ G TG+A+ +E +F G R++ V +L+TDG SSD PA KLR+ V+I VG+ V R +L IAS P E HVFT D+D+ I ++ C+ + + + K YV D + E+ Y SP N Y+ Y+
Sbjct: 438 KADIVFLVD---GSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEA---INTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAV-RSELEAIASPPAETHVFTVEDFDAFQRISFELTQSICL--RIEQELAAIKKKAYVPPKDLSFSEVTS--------YGFKTNWSPAGENVFSYHITYK 667 HSP 3 Score: 87.8113 bits (216), Expect = 5.714e-17 Identity = 62/211 (29.38%), Postives = 104/211 (49.29%), Query Frame = 3
Query: 1968 LDGEEFGRLGDAIARGHKPPCICPDKICSSKL--DLAFVIDAGAGSEQGGKEKMAETMEFGRRVASAFKVTPEETRVGLITYATDAQVMMNFHRYADPDAIVEARDAVRVKPHTG--KYTGQALDLAKEGLF--DSGHRADALDVAVLLTDGPSSDDVTLPARKLRDMGVKIITVGIGPEVDRGQLNDIASDPDEEHVF-TADYDSLATII 2579
L G+E L D P + C ++ D+ ++D GS G+ F R+ F + P+ ++ L Y+ D + + + D ++++A V P+ G TG AL+ ++ F +G R A + VL+TDG S DDV P++KL+D GV++ +GI D +L IA+DPD+ H + AD++SL+ I+
Sbjct: 1169 LVGQEMTTLSDTTVM----PILSSGMECLTRAEADIVLLVD---GSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQA---VANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIK-NADEVELKMIATDPDDTHAYNVADFESLSRIV 1368 The following BLAST results are available for this feature:
BLAST of TCONS_00005832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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