Overview
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00005832-protein ID=TCONS_00005832-protein|Name=TCONS_00005832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1800bpRun BLAST on NCBI Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
Blast
BLAST of TCONS_00005832-protein vs. Swiss-Prot (Human)
Match: COCA1 (Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 1.993e-21 Identity = 64/192 (33.33%), Postives = 103/192 (53.65%), Query Frame = 0 Query: 518 CSSKLDLAFVIDAGAGSEQGGKEKMAETMEFGRRVASAFKVTPEETRVGLITYATDAQVMMNFHRYADPDAIVEARDAVRVKPHTG--KYTGQALDLAKEGLF--DSGHRADALDVAVLLTDGPSSDDVTLPARKLRDMGVKIITVGIGPEVDRGQLNDIASDPDEEHVF-TADYDSLATIIGRTQRAACVG 704 S+ DL F++D GS G+ ++F + SAF + E+TRVG++ Y++D + N ++Y D E A++ P+ G TG A+D + F +G R VA+++TDG S D+V +PAR+LR++GV++ ++GI D +L IAS P HVF A++D++ I C G Sbjct: 135 VSAWTDLVFLVD---GSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRD---ELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIK-AADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSG 319 HSP 2 Score: 88.9669 bits (219), Expect = 2.371e-17 Identity = 69/247 (27.94%), Postives = 112/247 (45.34%), Query Frame = 0 Query: 521 KLDLAFVIDAGAGSEQGGKEKMAETMEFGRRVASAFKVTPEETRVGLITYATDAQVMMNFHRYADPDAIVEARDAVRVKPHTG--KYTGQALDLAKEGLF--DSGHRADALDVAVLLTDGPSSDDVTLPARKLRDMGVKIITVGIGPEVDRGQLNDIASDPDEEHVFTA-DYDSLATIIGRTQRAACVGGMLHEPVDKCKCNMYVKNDDKAEEELDKETAAFYNVYKTAVEASPRDANAVKYNTIYR 762 K D+ F++D GS G + F + +F+++P ++ L+ Y+ D ++ + I+EA + P+ G TG+A+ +E +F G R++ V +L+TDG SSD PA KLR+ V+I VG+ V R +L IAS P E HVFT D+D+ I ++ C+ + + + K YV D + E+ Y SP N Y+ Y+ Sbjct: 438 KADIVFLVD---GSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEA---INTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAV-RSELEAIASPPAETHVFTVEDFDAFQRISFELTQSICL--RIEQELAAIKKKAYVPPKDLSFSEVTS--------YGFKTNWSPAGENVFSYHITYK 667 HSP 3 Score: 88.1965 bits (217), Expect = 4.455e-17 Identity = 63/219 (28.77%), Postives = 105/219 (47.95%), Query Frame = 0 Query: 491 LDGEEFGRLGDAIARGHKPPCICPDKICSSKL--DLAFVIDAGAGSEQGGKEKMAETMEFGRRVASAFKVTPEETRVGLITYATDAQVMMNFHRYADPDAIVEARDAVRVKPHTG--KYTGQALDLAKEGLF--DSGHRADALDVAVLLTDGPSSDDVTLPARKLRDMGVKIITVGIGPEVDRGQLNDIASDPDEEHVF-TADYDSLATIIGRTQRAAC 702 L G+E L D P + C ++ D+ ++D GS G+ F R+ F + P+ ++ L Y+ D + + + D ++++A V P+ G TG AL+ ++ F +G R A + VL+TDG S DDV P++KL+D GV++ +GI D +L IA+DPD+ H + AD++SL+ I+ C Sbjct: 1169 LVGQEMTTLSDTTVM----PILSSGMECLTRAEADIVLLVD---GSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQA---VANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIK-NADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLC 1376 The following BLAST results are available for this feature:
BLAST of TCONS_00005832-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens)) Total hits: 1
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