TCONS_00005817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005817
Unique NameTCONS_00005817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005817 ID=TCONS_00005817|Name=TCONS_00005817|organism=Clytia hemisphaerica|type=transcript|length=715bp
ATTTGTCAAAGGTTAAGTTTTTCATCTTTCGTCTTGAACAGCGGAATAAC
CATACATTTGAAGGCTAAGCAAAAGTCAAGTTGGCAATAGAGGAGAATCT
ATACTCATTCGTCGTAGACTAAAGTCTCCTACGTTTTGTTGCTGGTGGAc
cgttattattattatgttGTACTTATTATCGTGGTGGTCTTTGGAAAATC
TGTTCAGTTTACATTGTGAATGTGATGATGGCAAACAGATTGAAGATTGT
GGCAAATGTTTTGACAAGTACGAGGATGAGTTGTCGAGTAGAGGAGAATG
TTGTAGGAGTTGCTATGAGGAATTGACGGCGGGTGGGCTAAATGTTCGAC
ATGACCTCCTTTGGGCGATGTGTTGTGACGACGAAAACGAAAAATTGGAG
GAAGCATACGACGCACATGAAACTTATGACGTACATTGCACTAAGGACGA
TCAAGTCCGAATCGAGGTTGTCGCATATCGCACAGAATATAAAGTGTATC
CCAAAAAGATATGCTGCTTTAATCTGACAATTTCAGATACTCCGGTTGTT
TGTGatttgaaggagaaaattttccagaaaacctCTATACCGGTATCCAT
GCAAATGCTTTTTCGGAAACGAAAAGAACCTAGGCATACGATACATGACA
ATGAATTGGTTGTAGATTTAGCACACTTTGAAGACAGAAAGATAAGAGAT
CGAGGAAGAGAGAGA
Run BLAST on NCBI

protein sequence of TCONS_00005817-protein

>TCONS_00005817-protein ID=TCONS_00005817-protein|Name=TCONS_00005817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MLYLLSWWSLENLFSLHCECDDGKQIEDCGKCFDKYEDELSSRGECCRSC
YEELTAGGLNVRHDLLWAMCCDDENEKLEEAYDAHETYDVHCTKDDQVRI
EVVAYRTEYKVYPKKICCFNLTISDTPVVCDLKEKIFQKTSIPVSMQMLF
RKRKEPRHTIHDNELVVDLAHFEDRKIRDRGRER
Run BLAST on NCBI

transcript from alignment at sc0000059:715977..716691

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005817 ID=TCONS_00005817|Name=TCONS_00005817|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000059:715977..716691 (Clytia hemisphaerica)
TCTCTCTCTTCCTCGATCTCTTATCTTTCTGTCTTCAAAGTGTGCTAAAT
CTACAACCAATTCATTGTCATGTATCGTATGCCTAGGTTCTTTTCGTTTC
CGAAAAAGCATTTGCATGGATACCGGTATAGaggttttctggaaaatttt
ctccttcaaatCACAAACAACCGGAGTATCTGAAATTGTCAGATTAAAGC
AGCATATCTTTTTGGGATACACTTTATATTCTGTGCGATATGCGACAACC
TCGATTCGGACTTGATCGTCCTTAGTGCAATGTACGTCATAAGTTTCATG
TGCGTCGTATGCTTCCTCCAATTTTTCGTTTTCGTCGTCACAACACATCG
CCCAAAGGAGGTCATGTCGAACATTTAGCCCACCCGCCGTCAATTCCTCA
TAGCAACTCCTACAACATTCTCCTCTACTCGACAACTCATCCTCGTACTT
GTCAAAACATTTGCCACAATCTTCAATCTGTTTGCCATCATCACATTCAC
AATGTAAACTGAACAGATTTTCCAAAGACCACCACGATAATAAGTACaac
ataataataataacggTCCACCAGCAACAAAACGTAGGAGACTTTAGTCT
ACGACGAATGAGTATAGATTCTCCTCTATTGCCAACTTGACTTTTGCTTA
GCCTTCAAATGTATGGTTATTCCGCTGTTCAAGACGAAAGATGAAAAACT
TAACCTTTGACAAAT

Coding sequence (CDS) from alignment at sc0000059:715977..716691

>TCONS_00005817 ID=TCONS_00005817|Name=TCONS_00005817|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000059:715977..716691 (Clytia hemisphaerica)
TCTCTCTCTTCCTCGATCTCTTATCTTTCTGTCTTCAAAGTGTGCTAAAT
CTACAACCAATTCATTGTCATGTATCGTATGCCTAGGTTCTTTTCGTTTC
CGAAAAAGCATTTGCATGGATACCGGTATAGaggttttctggaaaatttt
ctccttcaaatCACAAACAACCGGAGTATCTGAAATTGTCAGATTAAAGC
AGCATATCTTTTTGGGATACACTTTATATTCTGTGCGATATGCGACAACC
TCGATTCGGACTTGATCGTCCTTAGTGCAATGTACGTCATAAGTTTCATG
TGCGTCGTATGCTTCCTCCAATTTTTCGTTTTCGTCGTCACAACACATCG
CCCAAAGGAGGTCATGTCGAACATTTAGCCCACCCGCCGTCAATTCCTCA
TAGCAACTCCTACAACATTCTCCTCTACTCGACAACTCATCCTCGTACTT
GTCAAAACATTTGCCACAATCTTCAATCTGTTTGCCATCATCACATTCAC
AATGTAAACTGAACAGATTTTCCAAAGACCACCACGATAATAAGTACaac
at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003315XLOC_003315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005817-exon-sc0000059-1491911889:715977..716691TCONS_00005817-exon-sc0000059-1491911889:715977..716691Clytia hemisphaericaexon
TCONS_00005817-exon-sc0000059-1510915933:715977..716691TCONS_00005817-exon-sc0000059-1510915933:715977..716691Clytia hemisphaericaexon
TCONS_00005817-exon-sc0000059-1575043694:715977..716691TCONS_00005817-exon-sc0000059-1575043694:715977..716691Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005817-proteinTCONS_00005817-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:715977..716691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140228	0	0	0	0	0	0	0.253172	0.0590838	0.413779	0	0	0.757623	1.09069	0.380674	0.683609	0.530222	0.323691	1.84423	1.7399	0.692215	0.23662	0.28754	0.403393	0.225835	0.675933	0.0961404	0	0	0.0792875
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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