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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005817 ID=TCONS_00005817|Name=TCONS_00005817|organism=Clytia hemisphaerica|type=transcript|length=715bp ATTTGTCAAAGGTTAAGTTTTTCATCTTTCGTCTTGAACAGCGGAATAAC CATACATTTGAAGGCTAAGCAAAAGTCAAGTTGGCAATAGAGGAGAATCT ATACTCATTCGTCGTAGACTAAAGTCTCCTACGTTTTGTTGCTGGTGGAc cgttattattattatgttGTACTTATTATCGTGGTGGTCTTTGGAAAATC TGTTCAGTTTACATTGTGAATGTGATGATGGCAAACAGATTGAAGATTGT GGCAAATGTTTTGACAAGTACGAGGATGAGTTGTCGAGTAGAGGAGAATG TTGTAGGAGTTGCTATGAGGAATTGACGGCGGGTGGGCTAAATGTTCGAC ATGACCTCCTTTGGGCGATGTGTTGTGACGACGAAAACGAAAAATTGGAG GAAGCATACGACGCACATGAAACTTATGACGTACATTGCACTAAGGACGA TCAAGTCCGAATCGAGGTTGTCGCATATCGCACAGAATATAAAGTGTATC CCAAAAAGATATGCTGCTTTAATCTGACAATTTCAGATACTCCGGTTGTT TGTGatttgaaggagaaaattttccagaaaacctCTATACCGGTATCCAT GCAAATGCTTTTTCGGAAACGAAAAGAACCTAGGCATACGATACATGACA ATGAATTGGTTGTAGATTTAGCACACTTTGAAGACAGAAAGATAAGAGAT CGAGGAAGAGAGAGA Run BLAST on NCBI protein sequence of TCONS_00005817-protein >TCONS_00005817-protein ID=TCONS_00005817-protein|Name=TCONS_00005817-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MLYLLSWWSLENLFSLHCECDDGKQIEDCGKCFDKYEDELSSRGECCRSC YEELTAGGLNVRHDLLWAMCCDDENEKLEEAYDAHETYDVHCTKDDQVRI EVVAYRTEYKVYPKKICCFNLTISDTPVVCDLKEKIFQKTSIPVSMQMLF RKRKEPRHTIHDNELVVDLAHFEDRKIRDRGRER Run BLAST on NCBI transcript from alignment at sc0000059:715977..716691 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005817 ID=TCONS_00005817|Name=TCONS_00005817|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000059:715977..716691 (Clytia hemisphaerica) TCTCTCTCTTCCTCGATCTCTTATCTTTCTGTCTTCAAAGTGTGCTAAAT
CTACAACCAATTCATTGTCATGTATCGTATGCCTAGGTTCTTTTCGTTTC
CGAAAAAGCATTTGCATGGATACCGGTATAGaggttttctggaaaatttt
ctccttcaaatCACAAACAACCGGAGTATCTGAAATTGTCAGATTAAAGC
AGCATATCTTTTTGGGATACACTTTATATTCTGTGCGATATGCGACAACC
TCGATTCGGACTTGATCGTCCTTAGTGCAATGTACGTCATAAGTTTCATG
TGCGTCGTATGCTTCCTCCAATTTTTCGTTTTCGTCGTCACAACACATCG
CCCAAAGGAGGTCATGTCGAACATTTAGCCCACCCGCCGTCAATTCCTCA
TAGCAACTCCTACAACATTCTCCTCTACTCGACAACTCATCCTCGTACTT
GTCAAAACATTTGCCACAATCTTCAATCTGTTTGCCATCATCACATTCAC
AATGTAAACTGAACAGATTTTCCAAAGACCACCACGATAATAAGTACaac
ataataataataacggTCCACCAGCAACAAAACGTAGGAGACTTTAGTCT
ACGACGAATGAGTATAGATTCTCCTCTATTGCCAACTTGACTTTTGCTTA
GCCTTCAAATGTATGGTTATTCCGCTGTTCAAGACGAAAGATGAAAAACT
TAACCTTTGACAAAT Coding sequence (CDS) from alignment at sc0000059:715977..716691 >TCONS_00005817 ID=TCONS_00005817|Name=TCONS_00005817|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at sc0000059:715977..716691 (Clytia hemisphaerica) TCTCTCTCTTCCTCGATCTCTTATCTTTCTGTCTTCAAAGTGTGCTAAAT CTACAACCAATTCATTGTCATGTATCGTATGCCTAGGTTCTTTTCGTTTC CGAAAAAGCATTTGCATGGATACCGGTATAGaggttttctggaaaatttt ctccttcaaatCACAAACAACCGGAGTATCTGAAATTGTCAGATTAAAGC AGCATATCTTTTTGGGATACACTTTATATTCTGTGCGATATGCGACAACC TCGATTCGGACTTGATCGTCCTTAGTGCAATGTACGTCATAAGTTTCATG TGCGTCGTATGCTTCCTCCAATTTTTCGTTTTCGTCGTCACAACACATCG CCCAAAGGAGGTCATGTCGAACATTTAGCCCACCCGCCGTCAATTCCTCA TAGCAACTCCTACAACATTCTCCTCTACTCGACAACTCATCCTCGTACTT GTCAAAACATTTGCCACAATCTTCAATCTGTTTGCCATCATCACATTCAC AATGTAAACTGAACAGATTTTCCAAAGACCACCACGATAATAAGTACaac at
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005817-exon-sc0000059-1491911889:715977..716691 | TCONS_00005817-exon-sc0000059-1491911889:715977..716691 | Clytia hemisphaerica | exon |
TCONS_00005817-exon-sc0000059-1510915933:715977..716691 | TCONS_00005817-exon-sc0000059-1510915933:715977..716691 | Clytia hemisphaerica | exon |
TCONS_00005817-exon-sc0000059-1575043694:715977..716691 | TCONS_00005817-exon-sc0000059-1575043694:715977..716691 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000059 | supercontig | sc0000059:715977..716691 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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