TCONS_00005774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005774
Unique NameTCONS_00005774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length378

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005774 ID=TCONS_00005774|Name=TCONS_00005774|organism=Clytia hemisphaerica|type=transcript|length=378bp
GACTTTAAAGGACTCAAAAAATTCCCAAGGTATCATTGAATAAATGATGA
GATGTATCCAAAACAATCCGAACAAGCCAAACCACCATTATGTTGCCTTT
TCCAGAACCATCAAGgGACACGATTCGATGAGATATATCCAAATTAGTCT
ATACAAGCCAATCCACCATTATGTTGTCTTTTCTACAGCCATCAAGGTAT
CATTGAATAAATGATGAGATGTATCCAAAACAATCCGAACAAGCCAAACC
ACCATTATGTTGCCTTTTCCAGAACCATCAAGGTATTACGAGTGCGATTT
TCAGTTTTATGGCAATAAAAAGCATgGACAATCGATTCGATGAGATATAT
CCAAATTAGTCTATACAAGCCAATCCAC
Run BLAST on NCBI

transcript from alignment at sc0000059:509835..519750-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005774 ID=TCONS_00005774|Name=TCONS_00005774|organism=Clytia hemisphaerica|type=transcript|length=9916bp|location=Sequence derived from alignment at sc0000059:509835..519750- (Clytia hemisphaerica)
GACTTTAAAGGACTCAAAAAATTCCCAAGGTTTGCACCTACACCTTAAAA
GTCGACGGAATAATGTGTTACCTAGTAATTACCTGGCGACGTATTAAGTC
AAATTATGATCCTCTTCATACTGAACTCTCAACTGCACCTAAATTTCGAT
CACTTTTTGCTCTTGAAAACTTTTCCAGGGTGATCAAAAATCGTTTCGAT
ACTTGAATATCGAGGCCGTTTTCTTTTCTTTCTTTATTTCCGATCCCATC
CTATCGCCACTCGACACGGCCTCTCACTCGAGCTAGTNCGCAAGGCCATC
GTCTTTTCTTTACTTCCGATCCCATCCTATCGCCCTTCTACACGGCCTCT
CACTCGAGCTAGTGTGTTTTGGGTTTGTACATAATTTTCCCTTTTCATCG
TTTTCAGGTATCATTGAATAAATGATGAGATGTATCCAAAACAATCCGAA
CAAGCCAAACCACCATTATGTTGCCTTTTCCAGAACCATCAAGGTATTAC
GACTGCGATTTTCAGTTTTATGGCAATAAAAAGCATGTAGACACGAATTT
TATAAAGAAATTGTGAGAGGTTCTAATATTTCAAACCGTTAAAAAGATAC
TACGAACCTTCAGAATTTCGTTCAACTTTACTTTGTCAACCATACACCAG
CCAGGGTACATATGGATGACTTTAAAGGATTCTAAAAATTCCCAAGATTA
GCAGCACCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNCTGACAAAACAATGCAAATTCATATGTTCATTATATTTCCATT
TGATCACAGGCTTTTCGGCAGTACATTTATCGCTGATTCTTTGCCATTAG
CCTCCGTCTCAGAACGCGGTCAGAAAATTTTGCGGATAATTTCACAGCGA
AAATGCATCTAGTGAAATGTGAGTAATGTATCATAATTCAAGTCGACTGA
CATAATTATCCACATAATACATGTTACAAGTTCTGCCTACGGATTCACAA
GCTCGGCTATAATAAAACTATTACATGTTAGTAGCAGACCCGACTGACCA
ATGTTATGTAGCAGGTTGAAACATGAGTTTCTACTGGAAAGATGCAGTTT
GTTTTCAAGTTAAATCTTCAAAATAAAGCAAAATGTGTGGGTTTCTTTAC
TTTCAAACAACCTACCAATAGTTTTGGAACACTCCATAATAAAGGAAGAT
GGCTCTTCTTGTGGATTGGCTTTCTGATACCCCATATAAACACGATGTGA
CATGAAAGTGAAGAGACACGATTTGTTGCTTTTTGTTTGATTTGTTGACT
CATATATCTCATGGCTAGCGGGATAGCAAATGACTTTTCATGTATTGCTT
GGTTCTACATATGACACCTCTAACTTTGAACACCTCCAGAATGTTGAAAA
AAGCATTTCACGAGATAAGTTTCAATTATAATTTTCATGGAAATTTTTAA
TCGACAGATTTGGCTTGGCGTCAGTTTTGTTTGGTTGATGTTTGGTATCG
TGATCATTAAAAGCAATGAAATGCCACAGTCACTCTACACGTGATGCCTC
CAGCCATGATTGGTATCAGAATGTTGGAAAAAAACATTTTACGAGAAATT
GTTGATAGAAATTATATTGACTTGTTTTTACAATTTTGGCGGTGTGGGTT
TTGTTGGTTGATAATGTTTACACCGTGGGATCCTGGGATAGTTTTCAAAA
AACTGTTATATTGATTGTTGTTTGTTGGAATTGGGTACCAAAAAAAAAGA
GGACCTTATAAATACTTTATTTTTCTCATGAATCGAAAAAACCGTGTGGA
TAGTATGTCTTGTAGTAACCAATGCAGTGTCTGTTTTCAAATTTTGAAAG
CTCTACCTATACCTACTGAATTGAAGCTCTGACTAGCTCTGAGCCATGTT
TTATTCTTTGTTGCTATTAAAGATAGATTTTTAAATTGTCGTAATGTAAA
TTTATGGTAAAGTTTTAGTTTTTGAGTTTAGTTTNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNTTCCCCGAACGTTCCTCAGGAATGAACTT
TCATGACGTTATTTTTAAGCGTTCCTCACTCGTTCCTCGAACGTTCCTCA
GGAAAAGAGATGTTTCAACTTTGTTTCAGCATTCCTCGTCTATTCCTCGA
ACGTCCCTGAGGAAAGGACATTTTATGACGTTATTTTTAACCGTTGCTCA
CTCGTTCCTCGAACGTTCCTCAGGAATGGAAATATTTCCTTTTCACTTTA
TTGTTCCTCATGAGCCGAAAAATCTTTTTTGCAAAAATCTGCTTTAGCCA
TCTTTTACCTAGGCCTCAAAACACCATCTTTTACCTACGATAATACCCTA
CTTTTGTGCAAAAAATCATGATCCAGTCGGGCTCTGTCATATTTGATGGT
TTATAGTCATGCACCTTTGTGCCAATATCAGAAACTTTGAATGGGTCAAT
CTTGAGAAAAGCTGGTAACTAACGTTGTCCGTGGGTTAATTTATAGGACC
TCCATCGGGTTAAGTTCAAAAAGCCTGTAGGGATTTCCAATGAACTTAAA
ACACAGGGTGAAAAAAAAAAACCCTAGTTGTTTGTGAGCTTCCGTTACTA
ATGTGTTCTAAAGGACAAAAGTATTTCTCTAGCCCTTTCTTTCATAAAAG
TTTTTGATATTGAATATCTTATCCTTGAAAATGTATTAACAGCTCCAAAA
GTGTTTTTTCCTGAGAAACAAATGAGGAACTCTTTTAAATAACGTCATGA
AAGCCCATTCTTCAGGAACGTGTGAGGAAAAGATGATAAACGATAAAGTG
AAGAAGAAATATCTCGCTCGAGTGAGGAGCGCTTAAAAGTAACGTCATCC
ATTCCTGAGGAACGTTCGAGGAAGTAGTAAGGAACGCTTAAAAATAACGT
CATGAAAGTCTATTCCTGAGGAACGTTCGAGGAACGAGTGAGGAACGCTT
GAAAATAACGTCATGAAAGTCCGTCAGAAATGTTCATTCCTGAGGAACGA
GTGAGGAACGCTTGAAAATAACGTCATGAAAGTCTATTCCTGAGGAACGT
TCGAGGAACGAGTGAGGAACGTTCGAGGAACGAGTGAGGAACGCTTGAAA
ATAATGTCATGAAAGTCCATTCCTGAGGAACGTTCGAGGAACGAGTGAGG
AACACCTAAAAATTACGTCAGAAATGTCTATTCCTGAGGAACGTTCGAGG
AATAGATGAGGAATGCTGAAACAAAGTTGAAATNATTCATGTAATTCCCT
CAACGTACCTACTTTTGTCTTCGCTTCGCAGATAGCGACGATGTGAGGCT
TTTCCTCATGGGCCATGGACTGTAGCTCCTTAATTTTAAATGAAGTCAAC
TGATCGGGATTTGTATACAGAACTTTCATATCTTTGATTAATTTTTCTTT
TTGAGCAAAGTTGGCTTCTGTTGGTCTATGATATTTGTCTCCGTTAGGTT
GTTCGAGAAGGAGACATTCTTCATTGTTGGTGACTGGTTGGGGGTTGACG
GTTTTCTGAGTGGTATCTTCTTGACAGTGAAGCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
CATTTTAAAAAAACCACAAGTAGTTTTTAAGCGCCTTAACTTAGGTTTGG
GAAGTAAAGTTTTATCTCTGAGTTTTAACATAAGACTTAAGACTGAGGAT
TGTAAAGCTTGCGAATAGTCCGACTAGGCTGAGAATATACCTAATTTTGG
ACGATCTTTTCTTCGCAAAGGCTTTTCCAGGATGTTAAAAATCCATTTTG
ATACTTGAATGTTGCGACACCGTTGTCTTTTCTTTCTATTTTTCCCGATT
CCATCCTCTATTCACTCAACACGGCCTCTCACTGCAGCTAGTGTGGGTTG
AACTTGTACATAATTTTCCATTCTCAATTTTTTCAGGGACACGATTCGAT
GAGATATATCCAAATTAGTCTATACAAGCCAATCCACCATTATGTTGTCT
TTTCTACAGCCATCAAGGTATTATTTTAATGCCATTTTCAATTCCACTCA
AATAAAAATCTGACAAAACAATGCAAATTCATATATTCATTATATTTCCA
TTTTCCATAACAAGCCGATAATTTTAAAAACCATAAAACAAAACAAAGTC
CGAAAAGATTCATTCTGACATCAAAAATCTTGAAGTAACAGACGAAGTGA
TCTCATGTAAAAATGCTATATTTCGTATTCTATCTAATACATCATTCAGG
CAAAAAGTAAGTACAAAGAATAAAAGCTACTATTTATAAAAGTCATGGTA
AAAAAAAATCGTAAAAATGTTATCAATAAAAAGGCAATTAAAATGTAAAA
TTGGCTAAGTATAATGATCCCAAGTGACTAATGATGAAAAGAAACTAATC
TCGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAATATTATTTGACGTCA
GAAATTTGATTGTGACGACAATTTTTTTGAAATATGCAAAAAAGTAAGGG
TCAAAAGTGATGTGCCCCCATATAGACGAAGAGTTTTTTAAGAAGTAGGG
AGAGATTGTAATGTTTCAATTTTTCAACAGTTTCTACAAACCATGGGAAT
TTTGGTCAACTTTATTTTGTCAACCATACACCAGCCAGGGTACATATGGA
GGACTTTAAAGGACTCAAAAAATTCCCAAGATTTGCACCTACACCTTAAA
AGTCGACGGAATAATGTGTTACCTAGCAATTACCTGGCGACGTAATAAGT
CAAATTCTGATCCTCTTCATACTGAACTCTCAACTGCACCTAAATTTCGA
TCACTTTTTGTTCTTGAAAGCTTTTCCAGGGTGATCAAAAACCGTTTTGA
TACTTGAATTGCAAGGCCGTTGTCTTTTCTTTCTTTATTTCCGATCCCAT
CCTATCGCCACTCGACACGGCTTCTCACTCGAGCTAGTGTGTTTTGGGTT
TGTACATAATTTTCCCTTTTCGTCGTTTTCAGGTATCATTGAATAAATGA
TGAGATGTATCCAAAACAATCCGAACAAGCCAAACCACCATTATGTTGCC
TTTTCCAGAACCATCAAGGTATTACGAGTGCGATTTTCAGTTTTATGGCA
ATAAAAAGCATGTAGACACAGATTTTATAAAGAAATTGTGAGAAGTTCTA
ATGTTTCAAACCCTTAAAAAGTTACTACGAACCTTGGGAATTTCGTTCAA
CTTTACTTTGTCAACCATACACCAGCCATGGTACACATGGATGACTTTAA
AGGATTCTAAAAATTCCCAAGATTAGCAGCACCTACAATCAATGGCAGAC
TATTTGGCACAATAGGAGTTTCCCTCCGCATTTTAAAAAAACCACAAGTA
GTTTTTAAGCGCCTTAACTTAGGTTTGGGAAGTAAAGTTTTATCTCTGAG
TTTTAACATAAGACTGAAGACTGAGGATTGTAAAGCTTGCGAATAGTCCG
ACTAGGCTGAGAATATACCTAATTTTGGACGATCTTTTCTTCGCAAAGGC
TTTTCCAGGATGATAAAAATCCATTTTGATACTTGAATGTTGCGACACCG
TTGTCTTTTCTTTCTATTTTCCCGATTTCATCCTCTATTCACTCAACACG
GCCTCTCACTGCAGCTTGTGTGGGTTGAACTTGTACATAATTTTCCATTC
TCAATTTTTTCAGGGACAATCGATTCGATGAGATATATCCAAATTAGTCT
ATACAAGCCAATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003277XLOC_003277Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005774-exon-sc0000059-1575043694:519722..519750TCONS_00005774-exon-sc0000059-1575043694:519722..519750Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1575043694:519258..519343TCONS_00005774-exon-sc0000059-1575043694:519258..519343Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1575043694:512534..512614TCONS_00005774-exon-sc0000059-1575043694:512534..512614Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1575043694:510440..510568TCONS_00005774-exon-sc0000059-1575043694:510440..510568Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1575043694:509835..509887TCONS_00005774-exon-sc0000059-1575043694:509835..509887Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1510915933:519722..519750TCONS_00005774-exon-sc0000059-1510915933:519722..519750Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1510915933:519258..519343TCONS_00005774-exon-sc0000059-1510915933:519258..519343Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1510915933:512534..512614TCONS_00005774-exon-sc0000059-1510915933:512534..512614Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1510915933:510440..510568TCONS_00005774-exon-sc0000059-1510915933:510440..510568Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1510915933:509835..509887TCONS_00005774-exon-sc0000059-1510915933:509835..509887Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1491911889:519722..519750TCONS_00005774-exon-sc0000059-1491911889:519722..519750Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1491911889:519258..519343TCONS_00005774-exon-sc0000059-1491911889:519258..519343Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1491911889:512534..512614TCONS_00005774-exon-sc0000059-1491911889:512534..512614Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1491911889:510440..510568TCONS_00005774-exon-sc0000059-1491911889:510440..510568Clytia hemisphaericaexon
TCONS_00005774-exon-sc0000059-1491911889:509835..509887TCONS_00005774-exon-sc0000059-1491911889:509835..509887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:509835..519750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.5808	11.9923	8.77176	2.86181	0	0.272486	0	0	2.47457	2.47364	0.622769	1.04562	1.75214	0.493427	1.04262	1.425	1.40583	2.10606	2.00842	0.729821	0.771615	1.67314	1.46865	2.05292	0.272459	0	1.62158	0	6.90267	5.0725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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