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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005753 ID=TCONS_00005753|Name=TCONS_00005753|organism=Clytia hemisphaerica|type=transcript|length=2644bpRun BLAST on NCBI protein sequence of TCONS_00005753-protein >TCONS_00005753-protein ID=TCONS_00005753-protein|Name=TCONS_00005753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=683bp KLSGTIFAYGQTGTGKTFTMEGVRSDPTMRGVIPNSFDHIFTHISRTQDQRun BLAST on NCBI transcript from alignment at sc0000059:103866..121810- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005753 ID=TCONS_00005753|Name=TCONS_00005753|organism=Clytia hemisphaerica|type=transcript|length=17945bp|location=Sequence derived from alignment at sc0000059:103866..121810- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:103866..121810- >TCONS_00005753 ID=TCONS_00005753|Name=TCONS_00005753|organism=Clytia hemisphaerica|type=CDS|length=43092bp|location=Sequence derived from alignment at sc0000059:103866..121810- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005753 vs. Swiss-Prot (Human)
Match: KIF3B (Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1) HSP 1 Score: 790.415 bits (2040), Expect = 0.000e+0 Identity = 407/599 (67.95%), Postives = 489/599 (81.64%), Query Frame = 3
Query: 6 LSGTIFAYGQTGTGKTFTMEGVRSDPTMRGVIPNSFDHIFTHISRTQDQQYLVRASYLEIYQEEVKDLLSKDHKRKLELKERPDTGIYVKDLQSFVTKSVKEIEHVMNVGNQNRAVGSTNMNEHSSRSHAIFVIYIECSEVGPDGETHIRVGKLNMVDLAGSERQAKTGAKGDRLKEATKINLSLSALGNVISALVDGKSSHIPYRDSKLTRLLQDSLGGNARTVMVANMGPASYNYEETITTLRYANRAKNIKNKPKINEDPKDALLREFQEEIKRLQGELHXXXXXXXXXXXXXXXXXXVQKXXXXXXXXXXXXXXXA-NQEEYMKEQQAKLAEEKQKLLENHGMVESEKKRMIGEIDKRSNQLKKEREKVKSYTSKIKAMESKLLVGGKTILDKTTEQEKALELRRKEILEQKKREREIAQRLEQEEENAVEIKENYSSLQQEVDVXXXXXXXXXXXXXXXXQEIMDIQEEHIKERQSLETNLEELNQAIRLKKLIIENFIPSITQEKVTKRAFYDAEQEVWKMKPLTTAQTTQQMAKRPVSAVGNKRPISQYAKQAANASGNPRYKMENIISIELDMPTRTTRDYEGPAVAPRIQ 1799
+GTIFAYGQTGTGKT+TMEG+R DP RGVIPNSFDHIFTHISR+Q+QQYLVRASYLEIYQEE++DLLSKD ++LELKERPDTG+YVKDL SFVTKSVKEIEHVMNVGNQNR+VG+TNMNEHSSRSHAIFVI IECSEVG DGE HIRVGKLN+VDLAGSERQAKTGA+G+RLKEATKINLSLSALGNVISALVDGKS+HIPYRDSKLTRLLQDSLGGNA+TVMVAN+GPASYN EET+TTLRYANRAKNIKNKP++NEDPKDALLREFQEEI RL+ +L ++ +R EE EEG ++++Y +EQQ KL EK+ ++E+H +V EK R++ E +K+ L++E++ + +KIKAMESKLLVGGK I+D T EQ+K LE +R+EI EQK+REREI Q++E +E +E+KE YSSLQQEVD+KTKKLKKLF+KLQ+ K EI D+QEEHIKERQ LE EL + ++LK LIIENFIP + K+ RAF+D E++ WK+ P+T + QQM KRPVSAVG KRP+SQ+A+ + RY+ ENI+ +ELDMP+RTTRDYEGPA+AP++Q
Sbjct: 88 FNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQEEIARLKAQLEKRSIGRRKRREKRREGGGSGGGGEEEEEEGEEGEEEGDDKDDYWREQQEKLEIEKRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEMLGAKIKAMESKLLVGGKNIVDHTNEQQKILEQKRQEIAEQKRREREIQQQMESRDEETLELKETYSSLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQELEQTQNELTRELKLKHLIIENFIPLEEKSKIMNRAFFDEEEDHWKLHPITRLE-NQQMMKRPVSAVGYKRPLSQHARMSMMIRPEARYRAENIVLLELDMPSRTTRDYEGPAIAPKVQ 685 The following BLAST results are available for this feature:
BLAST of TCONS_00005753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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