TCONS_00005552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005552
Unique NameTCONS_00005552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005552 ID=TCONS_00005552|Name=TCONS_00005552|organism=Clytia hemisphaerica|type=transcript|length=2214bp
AGAGATTGGAAAAAGGACTTGATTGGTATACAAACAATGGGCGTATTGGA
ACGAAAAACCAACTCTCTTACTGACTTGAGAGTTGTCCAGGAAATTGATG
ATGAACTTACTGAACAAgtacaaaaagaagaaagtaacACAGATACAAAC
GAGAAGTCATCGAGTCAACACACACCAACACGAAGTCGAAGTACCCGGGG
CAATACTTTCTTAACAGCCATGGGTTTACAAACTAGATCATCGTCACTGA
CTCAACACCATCACAAAAACATGGAACATCTGATGGCAGTCAGAGCGAAA
TGTGTTGAAGAGCTGGTCAATACAGAGAAAGATTATGTACAAATGCTACG
CAATATCATAGAGGGATATTTAGAGAAAGTGCGTCAAGAGAAGAGCCTTT
TCACTGCAGCTGATGCAGAGACCATCTTCGGCAACATCGAAGAACTTTAT
CACTTCCATAAAGAATTCTTGAAAGAacttcaacaagccatcaaatTCGA
TCGAATGGAGGAATCCATTGTCGGGCATCTTTTCATAAAACACAAAAACA
GATTCGAGATCTACTCAAAATACTGCAACAATCAGCCTCGTTCCAGTGCT
AGAATCTCACGGTTgatcaaagaaaagaaatacgAATTATTTTTCGAAac
GTGCCGTTTACGTCAAAACATGATACGGCTTTCGTTGGACGGATTTCTTC
TTTCACCCGTCCAAAGAATTTGTAAATATCCACTACAATTAAAAGAATTA
TTGAAACATACACATTCTGAACACGAAGATTATAATACGCTCAACGAAGC
GAAAACATGCATGCAAAACGTTGCTGCTGTCATAAACGAGCGAAAAAGAC
GCTTAGAAAATGTAAATAAACTTGCACGGTGGCAATTGACTGTCTCTAAT
TGGAAAGATGAAGACGTGGTGATGAAAAGTAGTGATTTATTGTTTAAAGG
ACCTTTACTGAAGATTAATAACGGTCGAGAATGCGAACGTTTTGTGTATT
TATTTGACCATCAGTTGTTATATTTCGTCAAAGAGGAAAACAGACGACAG
CCATTATGTTACCGAGGACGCGTTGACTTGGATACGGCGATAATAGAGAA
CTTGGGAGATAACCATGTTTTTATACGAGGTGATACTGTGTCAAATGTGT
GGCGGATATGGAACACGAGTAAAACGAAATGGTGTTATTTCCGCGCGGAC
ACAGCGGAGAAGAAAGAGAATTGGTTGAAAGCgcttgaaaacgaaagaga
ACATGTTAAAGAAGAACAAAAGCAAGGTTTTACAGTACTACCAGAAGTTC
GAAGTGCGGCCATGGAAAGCGCTTACACAAAACATATAGCAGGTGTGAAA
CGTGGTCGGATGAGACGTAAATCCATTTGTACAAATCATCCGGAGCTGGA
AACAACGTACGCTTCCGGACCGTTAGCTGGCCCCATTAACCGGACTTTTT
CTTCGACTCTCGCTACATCCTCCTCCTCATCATCCACGAGGTCTTCCAAT
AACTCAAAATCATCCCTTTCAACGTCACCTTCAAGTCCAACgaacaataa
taataacaataatatgaCGTCATCGTACTCAATACAAAGCGAAGACGGGC
CAACCGTTCGGAAAAGGGTCCATAAACCGAAACGTAAAAACTCTTTTCGA
TGGTCATTAAATAGtactatatttgaaaaatacttttgattttttcatat
acattttcttcatcttttatATGAAAATGACCTCTCTCGTGACCTTTTGT
CTCATTTTTCTTTGAAGTCGTTTTTatgtattcaatttcatttgtttcgt
tttttgtcattttttgataataatttttttgcgaatattttctttttaca
cCTTCGTCACTTTTGTCTGCATCCACCTACGTATAACTGGGAAGATATTC
TCGAATATTTTACAAGGGACCGAGTTCAAACTTAGGTTTAGTTTTTACTC
ACGATTATCAAACTTTGAGGTTTCTTTGAacttaaaatatatttcttaca
ctcttttttatgaTTATTTTATAGTTTCCATGTTTTCTGTCCAATTTTTA
TGTGACcaattttgtataaaattttACCTAAATTTAATGATTGCCCCTGT
TTATACTATTTTATGCCAAACTGAATATAgagataaatttattttttata
tgaatAAAAGACAGAAATTCTTTAGTATAAAATGATTACAAAGTTTCCTT
ATCCATTTTCctag
Run BLAST on NCBI

transcript from alignment at sc0000054:146970..156821+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005552 ID=TCONS_00005552|Name=TCONS_00005552|organism=Clytia hemisphaerica|type=transcript|length=9852bp|location=Sequence derived from alignment at sc0000054:146970..156821+ (Clytia hemisphaerica)
AGAGATTGGAAAAAGGACTTGATTGGTATACAAACAATGGGCGTATTGGA
ACGAAAAACCAACTCTCTTACTGACGTAAGTTCTATGTTTGGTGATGTCA
TAAAAAATAGATTGGGCTCTAATTACTTCAATCATCAATCTAGCAGGTGT
TTCCACCAATATTTATTTCCATTGTTCGTTTCTATCATTTCAATCATCAA
CTCAATCAGACGCTTTCTTCTAAACTACAATATAGAAAGATGGCGTTTAT
GAGGATACTGAAATGTCGACTTTGATTTTTACCAAGAAAGTTGGTTTTAA
CAGTTTTCAAGGGATATGCTTTCTTGTTATTGGCGGATTTCTTGTGTCAC
CCAAGCACAGTGATTGAACCATCTATAACCTGATATGATATCTGACATTT
GTTACTGTCAGCACATTTCTGCTTCTTTATCTATGAAACGCACATTGTCA
TTAATGTGTGTATCTAGCTAAGAAACTTTTAAGTGAGGTGGGTTCACATG
CGACAATATAGTTGAGAGTTAGTACCTATGCCTTTTTCTTAACTATATTT
ATTTACTAAATCGTTTCCTTGGCAGGTACGAGCTTTTTTTAATCCAATTA
TGTTTTATTTGACCGATAACATTTGTTGAGCTACTAACTTCGGTTACTTT
GCTTTATTTCActgttgttcttattttttttgcaagTAGGCTACACTCcg
cactttttttataagaaccagtttAGGCTGAGACTCGACTGTTCTCATTT
GTCGGTCATTTCTAAAATATGAGTGtggtttttttaatttgttttaagGA
TTAGTAGAGCACAGTTGAGCaacgtgttcttataaagctagTTTCTAGtt
taaatgtcgtaaattttcACATTGTATCTCCATTAGTTTATTGCTAATTA
AGTTAAGATCATAAATTTCCATATAGCATCAATAAATGATCTGTCATTTG
TAATATATTGATTATATTGTTTGTTTGCTCGTTTCTTCGTCGTATCATTA
TCCTAATAGGATTTGCGAGAATCCCTTTGTTGACATATTTACATATCAAC
ATTGAAGATGAAATTAGAACCCACTTGTTGACTTTTTGAGCATGACTGGT
GCCAAAGATTTCTTGTCTCATTCTGTCTCATTCTgtaactaaaattattt
tttggaagTTTCAAAGGAAATTATGGCTTGTTGAGCAGGAAAGCTGGAAT
CGAGAAAACCGTTCTTATTTTATTAAAGTGCTTTTTCCGATCTTAATTTC
CTTtctgttttaaaattatatttttcacaaaataatGTCTTGCAAAATAA
AATGCTCAATGCTATCACTGTAGGTAACTAGTTGAATGTTTCTATAATTG
GTAATTAATTAACAAAGTATGTTTGGCCTGCCCTACTAATTGGTGATAAA
CGTCTTATGCATCAAAAGGGAACCAAATTCTCATCTTTTGAATctccttt
gaaaaaaattgatcgaTATTGTGCATTCTTGTTGTTTTTGGGTGTATCAG
TGAAAAGGTGAtttcaattttagattttttgggTGATGACAATTTATGGT
TTTGAAACTGGACAGGTACTGtgtgtttcttttgtttcttcgTGTTTCCT
GAGTGAAGTGAATGAAATCTTCACTCAATTAATTTGAAGTCTTTCATTAA
TAACATCACTCATTTGAAGATTTTAAGCATGTTAGACTCTAGCTTGTAGC
ATTTTGTATAGATGAATTGTTTCCACGTTTGGATTGCATTCGGAATGTGA
GAGTGAATAAATCCAACCTAACAAAAAGAGGGAAGTGATGGTCTTTCAAG
AATGAGATGCTTTAACAGCCGGAAGACGTTCCCAAATAAAGCTTTACCCT
CAAAAAGGTTGTTTTTAGAAAAGCTATTTTTAGTTGTGTTGTGATAAAAA
TCAATTCTTATTTTTGTGTAGGATCACCAAAACCATTATTCGTAattatt
tatgttttttccATCAAAATATTATGTTAAGTTTTCCTTGGTAACCTCCA
TACCATTAGGCTTTCATAAGCATCGAGTAATAGTTCTATCTTTGTATATC
GTGCTTGTGAAATCCTAACAAGTAGGGGAGGGGGGTATTTGACAGTTACA
TTTTTTCAATATGGGGATTTTATTTTAAACAGTTCTAAAACGAGTCTTCA
AATGAAGTTCATTGCAGCAAAATGTATACCTTGTTAAGTACTTCGTCGCA
TCAATATTCTTATAACTCACAGTAGATAACCCAGCAGTATTGGTTATTTG
TTTATTATCTATCTTTACTTTATAAATACCAAATCGATGCCATTTCTTTC
CTGTTTGGTTGTACGTCAATAGGTCACGATTTAATACATGCTGtgatgtt
ttatttatttgtttttatgatttcaattaACATCATTAGCAATTAAAACA
TGCCATATACTTTATGTTTGATGCATTATGTATACTAGTTTTACAGGTTT
GTTCTTTCATTATAATCCAATGTTATGATAAACTTTATTTTATGCATGGG
TTGCCTTTTTCAAACGTTAactaattttatgtttttttatgggATCTTAT
GTTCGTTTCATTTTGCAAGGAAATTGTGTCCGGCTATCTTATGATGCGAT
TTGTAAGTTTTTTGTACATctctaataattttttttacatgtCACATTTG
AGCTATGATTAGCAATTTTCAATTGACAGCCGTCTTAGACTTCTAGATAA
GGAgttcttttcgatttttttcgtgGTTATTGATTGTGTATTGTCTGTAT
CCACTTGTCATCAATGATGTCATTGTGTTTGGTCGACCTTGTCTaccctt
aagggaacttattttggcgggaactaattttggcggatttggcgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
ccgccaaaattaaaaatttcgttgactcgccaaaattagttcccgccaaa
ataagttcccttaaggtagtagaTCGAGGTGGCAAATCTAATAGCTCGGT
TGTTGAACTGAAAGACCTTTTGTTCTTTCTACTattcttcaagaaaaaaa
tatctgCCTTATTAACTGTTATTACTGTATTGTGACAAAGTCACTCTGAT
TTTTCGTTTGAAATGCAAAGTTGACCTACCATACGTTTACACCACAACAG
GAATTTCTTGGCATTCTTGATAAAGACATACAGTTAATTGGTTCTGAATG
TTCATCCAATTATTTTTTTAGACATGCTCTTGACTTCTCAAGTCGCCTTT
CCATAATCAACGGAGTCTTTTTGCGCTATTTAAGTATTTCATAATGATGT
TACCTTGCTGGTTCTGATTGGGATGTTGAAAAAATACAAGATGAATGTCA
CTAGCTATCATCCACTGAGGGTCTATTGAGTTATATAATGTTGATGTAAC
TTTTGATGTCATTTTTGTATCCCTTCTATATATCTTTCGATCCCTATAAA
ACTGATAATATAATGAATGTGAGAGAATCTAGAACAGAAAAAGTAAAATG
TGGCTTTTCAAAGTGGTTAGCTatctttcaattttgttttttcaatgcTG
CAATTGAGAAATGAATCTTTAACTGTCCCAACACCATTGGCTGATTTTGC
TGCTGTTTAGTGCTTGAaattttaacatgttctttagttttaaaacaaag
aagaaaagttATTGGTTACTCAAATTATCTTATTTTGGGTTGTTATTGAG
gcgaatatttcaaaagcgAGTAAGTTGAAGCGACCATCTTTATTGTCAAG
CCAAGTACTCGTTTTTTCCGTAACATCGGTGACCAAAAACTCATAGCAAA
TAGTTCTTCTTAGCTTCTTACTAAATTTTTCCATCAAAAGAAAGGCAGGT
TTGTAGGCCAGGTTTCAAGCAGCTTAAATTTTTCTCTCTTGCAAAGGCCA
TATTTCTAAGCGCTTGGAGGGGCTGATTTGTCAAAACAAGGCCTTCTTTT
CATCGAAATCACTTAATCTTGACAATAAATCCTTCAAAATCTCAGGCTAC
TGATGTCATTAAGTCCCGAAAGAACTGAAAGAAAACATGGttttattctt
tttcaaaaaaaaagagaaggtGTTGCGAAATCACTTGGTGatatttttca
tccaaatttgaAACATTTCCGTTGTTGGTGGGCAGAGGACGTTTTatgag
aaaactttttgaactgTTGAAGTTGACTTGGTTATAACCCGAGTGACGTT
TCTATCTCATTCATCTGTGTTATTGTAGGAGAAAGTAGTTGGTTGTTGTT
TTACATATTCTGAAAATCTTTCTTCTTTGATATGGTTTGTTGGGATGGTG
AAATGTTGCATGTGATTGAGGTACTACAGTTGAAGTCTTCTATTCGAGCC
GTTTTCCTTTTAGAAACAGAGAAAGGGATTTTATCTCAACCGTCTTTCCA
AGTAAATGCTTGACTATCATTATTTCGTTGTGTCATTCAGAATTTTGATT
TGGTAGGAAAAGTGTCAAACACGTATAACTAATTGTCATGTACCATTTGA
AATGCCATAGATGAAAGTGTATAATTTTAGCATTGACGTGTTTTTTACTT
AATgggaaacaatttttgaaactcCATCCATCGGCAATACTATCTCCTTT
TAtagaatgttttaattttcaagcttAACAGAATTTCCCATGCGTCTACG
AAGGATATCAGTTTTTACGTCACAGCACTTTGATGGAAATTGTTTATAAA
GATGCGTATTTTATCCTTTCTCATTTCCAGTTGAGAGTTGTCCAGGAAAT
TGATGATGAACTTACTGAACAAgtacaaaaagaagaaagtaacACAGATA
CAAACGAGAAGTCATCGAGTCAACACACACCAACACGAAGTCGAAGTACC
CGGGGCAATACTTTCTTAACAGCCATGGGTTTACAAACTAGATCATCGTC
ACTGACTCAACACCATCACAAAAACATGGAACATCTGATGGCAGTCAGAG
CGAAATGTGTTGAAGAGCTGGTCAATACAGAGAAAGATTATGTACAAATG
CTACGCAATATCATAGAGGTACGTTTTGTAAATGACTTCTAGTTACCTAA
AATTCAGACACTTGCTAATAATGTGGCTATGGCTATATATTAAAGTTATC
TAATTTGCACGATTGAGTACATCTGACATCTCTATATCAATCGCTCTTTT
TTACATTGCAGGGATATTTAGAGAAAGTGCGTCAAGAGAAGAGCCTTTTC
ACTGCAGCTGATGCAGAGACCATCTTCGGCAACATCGAAGAACTTTATCA
CTTCCATAAAGAATTCTTGAAAGAacttcaacaagccatcaaatTCGATC
GAATGGAGGAATCCATTGTCGGGCATCTTTTCATAAAACACGTAAGTTGA
CTTTTGATTAATTAGTTCGTCCTCTCAATCTACTGAGCTCTGAACTGGGT
gtatttcaatttctttcaacTTTAATGGTAAGCAGGGTgtcactttttca
tttttttgacgaAGTGGTACATTAAGGAAAACTCTAATCCACCCGTGACC
CCGTTATTATTTCTGGTGCTTGAGTTTAGTAGTCAAGTTCTGCTCCGTCA
ATCTTTTGACTACGAATTTGTTATGGGAGATTCTTGTGAGAAACATTATA
TAACAAGGAGACCTCCAAAACATATGTCCTTGGATTATAGCTTCTCAATT
TCACAGATTATAAGTTTTCGCACGACTTTAGNTATGTCCTTGGAttatag
cttctcaaattcacagATTATAAGTTTTCGCACGGCTTTAAATAGAACTG
ACCCAGTGATGTGACTTTTATTTATTGTTTTGGTTATAGAAAAACAGATT
CGAGATCTACTCAAAATACTGCAACAATCAGCCTCGTTCCAGTGCTAGAA
TCTCACGGTTgatcaaagaaaagaaatacgAATTATTTTTCGAAGTAAGT
AATAGACCCTCTAGGTGTTATTATCGGATTCTGTTTGAATATTTGGGGAA
TTTCTTGAATCTCAAACATTTAGAAACCCGTCAATCTCAACTAATGTCCC
TGAGGCGCCATAGGATTGATGAAGATTTGATAGGATCACTTCATTGAGAc
tcctttcttgttttttctgcGGATTTATAAGATTTAAAACCTTCGATTCT
CATGTGCTCGAGTTATGTGCCTTAGGCAGATTCATCCATTAAAGAATTTA
TACCGCTATTTTCTTGTTAATCGACCATTTAGCGGTGGAATtctgatcga
aaaaaaaatctgacaaaACTCTTCACAAATATGGTTGATAAGATGATCGA
TAGATGGTCACATTTTTCTCACTGTTCGACAAATTCTTTTTCATAATCCA
AATATAAGACCGTTGacttaaaattcttttttaccTTGCAACTATTTTAA
GaagatttatctttttaaagctacttttaaAACCTGCGAAATTTTTATTC
AGGTCAAACAGCATTTTTGATATTGTTTCATCTGCAGTAGAGGATTTACA
CTTGGGTGTTTATGAGAAATTCGTGATCGACGCATAcgattaaaagtttt
tttcattcgTTTTCGAGGCCTCTAACTGCTTATTTCCCGGATATTTTCTA
TTATTTCGAACCGTTTTAACACCTAACGGTCCCGGATGACGAATGCTCCc
gtttgaaaaaactcaaacgTCCTCATTTAAACCACTTATAAAGGTGTCTC
AAAGTACCACAAAACTTCCTTTAATGATGAAATAGCGCGTCATATTTATA
AAtactttttatttcttttctttttatagacGTGCCGTTTACGTCAAAAC
ATGATACGGCTTTCGTTGGACGGATTTCTTCTTTCACCCGTCCAAAGAAT
TTGTAAATATCCACTACAATTAAAAGTAAGTATCCGGATGCTTtgtctat
ctatatatttcatactaAAAGGTCCTGGGAGCCATTATCCGTACATTATT
ACAAAACAATTGATGTAAGGTATTCGCTTACGCTACTCAAGTCATTTGTA
GAGATTGTTGTCTCAAAATCCTTGTTTACCTTCTACCAATTTTACCCATG
ATTCATAGCGGTCTAAAAAGATAGGGTTTTGAATATTAGAAGGTTGGTTG
CTGACGAGTATTTTGTAAAAGGAAACTGTACCTGTATGCTGGATATCATT
TTATTTACTTATTCCTTTTCCAGGAATTATTGAAACATACACATTCTGAA
CACGAAGATTATAATACGCTCAACGAAGCGAAAACATGCATGCAAAACGT
TGCTGCTGTCATAAACGAGCGAAAAAGACGCTTAGAAAATGTAAATAAAC
TTGCACGGTGGCAATTGACTGTCTCTAATTGGAAAGATGAAGACGTGGTG
ATGAAAAGTAGTGATTTATTGTTTAAAGGACCTTTACTGAAGATTAATAA
CGGTCGAGAATGCGAACGTTTTGTGTATTTATTTGACCATCAGTTGTTAT
ATTTCGTCAAAGAGGAAAACAGACGACAGCCATTATGTTACCGAGGACGC
GTTGACTTGGATACGGCGATAATAGAGAACTTGGGAGATAACCATGTTTT
TATACGAGGTGATACTGTGTCAAATGTGTGGCGGATATGGAACACGAGTA
AAACGAAATGGTGTTATTTCCGCGCGGACACAGCGGAGAAGAAAGAGAAT
TGGTTGAAAGCgcttgaaaacgaaagagaACATGTTAAAGAAGAACAAAA
GCAAGGTAcctatcaagtaccatttttaaattttttaaatacctTAATGC
TTAATGTTCTTGTCATTTGAAAGACTACACCTAATTTCATAGGGGGTAGT
CTCAAGCCAGCCCCTCATTTTCCCCTGTATATAATTCATAAGTGCAGTCA
AGGCGACCATCGAGCACTTCGtatattttgatcattttaagTAGAGCATG
ATTTGGAATACTCATTATTTATATTCTCATTTCCCGTTCAGGTTTTACAG
TACTACCAGAAGTTCGAAGTGCGGCCATGGAAAGCGCTTACACAAAACAT
ATAGCAGGTAAGATTCCCTTTTTAATGGATCAAGGCATCATCAACTTTAT
AAAGGTCCTATCTGAATGTGGATTCTCTTATTGAGGGCGTAAGGgtaaat
cgttcaaataatctCGCACcctttttaaattaaataaatcaGAACATGAA
AATTCAATTTATCTTTCCTCCATTTTTCAGGTGTGAAACGTGGTCGGATG
AGACGTAAATCCATTTGTACAAATCATCCGGAGCTGGAAACAACGTACGC
TTCCGGACCGTTAGCTGGCCCCATTAACCGGACTTTTTCTTCGACTCTCG
CTACATCCTCCTCCTCATCATCCACGAGGTCTTCCAATAACTCAAAATCA
TCCCTTTCAACGTCACCTTCAAGTCCAACgaacaataataataacaataa
tatgaCGTCATCGTACTCAATACAAAGCGAAGACGGGCCAACCGTTCGGA
AAAGGGTCCATAAACCGAAACGTAAAAACTCTTTTCGATGGTCATTAAAT
AGtactatatttgaaaaatacttttgattttttcatatacattttcttca
tcttttatATGAAAATGACCTCTCTCGTGACCTTTTGTCTCATTTTTCTT
TGAAGTCGTTTTTatgtattcaatttcatttgtttcgttttttgtcattt
tttgataataatttttttgcgaatattttctttttacacCTTCGTCACTT
TTGTCTGCATCCACCTACGTATAACTGGGAAGATATTCTCGAATATTTTA
CAAGGGACCGAGTTCAAACTTAGGTTTAGTTTTTACTCACGATTATCAAA
CTTTGAGGTTTCTTTGAacttaaaatatatttcttacactcttttttatg
aTTATTTTATAGTTTCCATGTTTTCTGTCCAATTTTTATGTGACcaattt
tgtataaaattttACCTAAATTTAATGATTGCCCCTGTTTATACTATTTT
ATGCCAAACTGAATATAgagataaatttattttttatatgaatAAAAGAC
AGAAATTCTTTAGTATAAAATGATTACAAAGTTTCCTTATCCATTTTCct
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003165XLOC_003165Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005552-exon-sc0000054-1491911889:146970..147044TCONS_00005552-exon-sc0000054-1491911889:146970..147044Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:146970..147044TCONS_00005552-exon-sc0000054-1510915933:146970..147044Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:146970..147044TCONS_00005552-exon-sc0000054-1575043694:146970..147044Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:152550..152837TCONS_00005552-exon-sc0000054-1491911889:152550..152837Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:152550..152837TCONS_00005552-exon-sc0000054-1510915933:152550..152837Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:152550..152837TCONS_00005552-exon-sc0000054-1575043694:152550..152837Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:152981..153160TCONS_00005552-exon-sc0000054-1491911889:152981..153160Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:152981..153160TCONS_00005552-exon-sc0000054-1510915933:152981..153160Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:152981..153160TCONS_00005552-exon-sc0000054-1575043694:152981..153160Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:153609..153713TCONS_00005552-exon-sc0000054-1491911889:153609..153713Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:153609..153713TCONS_00005552-exon-sc0000054-1510915933:153609..153713Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:153609..153713TCONS_00005552-exon-sc0000054-1575043694:153609..153713Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:154549..154644TCONS_00005552-exon-sc0000054-1491911889:154549..154644Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:154549..154644TCONS_00005552-exon-sc0000054-1510915933:154549..154644Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:154549..154644TCONS_00005552-exon-sc0000054-1575043694:154549..154644Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:154943..155474TCONS_00005552-exon-sc0000054-1491911889:154943..155474Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:154943..155474TCONS_00005552-exon-sc0000054-1510915933:154943..155474Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:154943..155474TCONS_00005552-exon-sc0000054-1575043694:154943..155474Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:155711..155776TCONS_00005552-exon-sc0000054-1491911889:155711..155776Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:155711..155776TCONS_00005552-exon-sc0000054-1510915933:155711..155776Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:155711..155776TCONS_00005552-exon-sc0000054-1575043694:155711..155776Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1491911889:155950..156821TCONS_00005552-exon-sc0000054-1491911889:155950..156821Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1510915933:155950..156821TCONS_00005552-exon-sc0000054-1510915933:155950..156821Clytia hemisphaericaexon
TCONS_00005552-exon-sc0000054-1575043694:155950..156821TCONS_00005552-exon-sc0000054-1575043694:155950..156821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:146970..156821 +
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.21272	0.00322161	0	1.31793	1.09134	1.30964	2.19851	1.11283	3.76822	0.143256	5.2636e-07	0.568569	5.66852	5.72812	3.56529	8.95606	11.7331	9.22663	1.74473e-05	3.98002	0.789627	4.19955	1.0134e-05	1.89741e-07	0.584764	0.0435079	15.701	1.63253	0.100638	1.0701
Blast
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BLAST of TCONS_00005552 vs. Swiss-Prot (Human)
Match: ARHG4 (Rho guanine nucleotide exchange factor 4 OS=Homo sapiens GN=ARHGEF4 PE=1 SV=3)

HSP 1 Score: 303.908 bits (777), Expect = 1.288e-91
Identity = 153/392 (39.03%), Postives = 239/392 (60.97%), Query Frame = 1 
Query:  289 VRAKCVEELVNTEKDYVQMLRNIIEGYLEKVRQEKSLFTAADAETIFGNIEELYHFHKEFLKELQQAIKFDRMEESIVGHLFIKHKNRFEIYSKYCNNQPRSSARISRLIKEKKYELFFETCRLRQNMIRLSLDGFLLSPVQRICKYPLQLKELLKHTHSEHEDYNTLNEAKTCMQNVAAVINERKRRLENVNKLARWQLTVSNWKDEDVVMKSSDLLFKGPLLKIN--NGRECERFVYLFDHQLLYFVKEENRRQPLCYRGRVDLDTAIIENLGDNHVFIRGDTVSNVWRIWNTSKTKWCYFRADTAEKKENWLKALENEREHVKEEQKQGFTVLPEVRSAAMESAYTKHIAGVKRG--------RMRRKSICTNHPELETTYASGPLAGP 1434
            +R   + E+++TE+DY++ LR+I EGY+ + R+   +F+     TIFGNIE++Y   K F+K L+Q    +R   S +G  F++H+  F+IYS+YCNN P +   +SRL K  KY  FFE CRL Q MI +SLDGFLL+PVQ+ICKYPLQL ELLK+TH +H D+  +  A   M+NVA +INERKRRLEN++K+A+WQ ++ +W+ ED++++SS+L++ G L ++     +  +R  +LFDHQL+Y  K+  RR  L Y+GR+D+D   + +L D        ++ N +R+   +            E+K+ WLKA   ERE V+ +Q+ GF++    R  AM +A  + + G  +         R +  ++ +N P+ +    + P   P
Sbjct:  284 MRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSNRPQQQVLVLAEPRRKP 675
The following BLAST results are available for this feature:
BLAST of TCONS_00005552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARHG41.288e-9139.03Rho guanine nucleotide exchange factor 4 OS=Homo s... [more]
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