|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005552 ID=TCONS_00005552|Name=TCONS_00005552|organism=Clytia hemisphaerica|type=transcript|length=2214bp AGAGATTGGAAAAAGGACTTGATTGGTATACAAACAATGGGCGTATTGGA ACGAAAAACCAACTCTCTTACTGACTTGAGAGTTGTCCAGGAAATTGATG ATGAACTTACTGAACAAgtacaaaaagaagaaagtaacACAGATACAAAC GAGAAGTCATCGAGTCAACACACACCAACACGAAGTCGAAGTACCCGGGG CAATACTTTCTTAACAGCCATGGGTTTACAAACTAGATCATCGTCACTGA CTCAACACCATCACAAAAACATGGAACATCTGATGGCAGTCAGAGCGAAA TGTGTTGAAGAGCTGGTCAATACAGAGAAAGATTATGTACAAATGCTACG CAATATCATAGAGGGATATTTAGAGAAAGTGCGTCAAGAGAAGAGCCTTT TCACTGCAGCTGATGCAGAGACCATCTTCGGCAACATCGAAGAACTTTAT CACTTCCATAAAGAATTCTTGAAAGAacttcaacaagccatcaaatTCGA TCGAATGGAGGAATCCATTGTCGGGCATCTTTTCATAAAACACAAAAACA GATTCGAGATCTACTCAAAATACTGCAACAATCAGCCTCGTTCCAGTGCT AGAATCTCACGGTTgatcaaagaaaagaaatacgAATTATTTTTCGAAac GTGCCGTTTACGTCAAAACATGATACGGCTTTCGTTGGACGGATTTCTTC TTTCACCCGTCCAAAGAATTTGTAAATATCCACTACAATTAAAAGAATTA TTGAAACATACACATTCTGAACACGAAGATTATAATACGCTCAACGAAGC GAAAACATGCATGCAAAACGTTGCTGCTGTCATAAACGAGCGAAAAAGAC GCTTAGAAAATGTAAATAAACTTGCACGGTGGCAATTGACTGTCTCTAAT TGGAAAGATGAAGACGTGGTGATGAAAAGTAGTGATTTATTGTTTAAAGG ACCTTTACTGAAGATTAATAACGGTCGAGAATGCGAACGTTTTGTGTATT TATTTGACCATCAGTTGTTATATTTCGTCAAAGAGGAAAACAGACGACAG CCATTATGTTACCGAGGACGCGTTGACTTGGATACGGCGATAATAGAGAA CTTGGGAGATAACCATGTTTTTATACGAGGTGATACTGTGTCAAATGTGT GGCGGATATGGAACACGAGTAAAACGAAATGGTGTTATTTCCGCGCGGAC ACAGCGGAGAAGAAAGAGAATTGGTTGAAAGCgcttgaaaacgaaagaga ACATGTTAAAGAAGAACAAAAGCAAGGTTTTACAGTACTACCAGAAGTTC GAAGTGCGGCCATGGAAAGCGCTTACACAAAACATATAGCAGGTGTGAAA CGTGGTCGGATGAGACGTAAATCCATTTGTACAAATCATCCGGAGCTGGA AACAACGTACGCTTCCGGACCGTTAGCTGGCCCCATTAACCGGACTTTTT CTTCGACTCTCGCTACATCCTCCTCCTCATCATCCACGAGGTCTTCCAAT AACTCAAAATCATCCCTTTCAACGTCACCTTCAAGTCCAACgaacaataa taataacaataatatgaCGTCATCGTACTCAATACAAAGCGAAGACGGGC CAACCGTTCGGAAAAGGGTCCATAAACCGAAACGTAAAAACTCTTTTCGA TGGTCATTAAATAGtactatatttgaaaaatacttttgattttttcatat acattttcttcatcttttatATGAAAATGACCTCTCTCGTGACCTTTTGT CTCATTTTTCTTTGAAGTCGTTTTTatgtattcaatttcatttgtttcgt tttttgtcattttttgataataatttttttgcgaatattttctttttaca cCTTCGTCACTTTTGTCTGCATCCACCTACGTATAACTGGGAAGATATTC TCGAATATTTTACAAGGGACCGAGTTCAAACTTAGGTTTAGTTTTTACTC ACGATTATCAAACTTTGAGGTTTCTTTGAacttaaaatatatttcttaca ctcttttttatgaTTATTTTATAGTTTCCATGTTTTCTGTCCAATTTTTA TGTGACcaattttgtataaaattttACCTAAATTTAATGATTGCCCCTGT TTATACTATTTTATGCCAAACTGAATATAgagataaatttattttttata tgaatAAAAGACAGAAATTCTTTAGTATAAAATGATTACAAAGTTTCCTT ATCCATTTTCctag Run BLAST on NCBI transcript from alignment at sc0000054:146970..156821+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005552 ID=TCONS_00005552|Name=TCONS_00005552|organism=Clytia hemisphaerica|type=transcript|length=9852bp|location=Sequence derived from alignment at sc0000054:146970..156821+ (Clytia hemisphaerica) AGAGATTGGAAAAAGGACTTGATTGGTATACAAACAATGGGCGTATTGGA
ACGAAAAACCAACTCTCTTACTGACGTAAGTTCTATGTTTGGTGATGTCA
TAAAAAATAGATTGGGCTCTAATTACTTCAATCATCAATCTAGCAGGTGT
TTCCACCAATATTTATTTCCATTGTTCGTTTCTATCATTTCAATCATCAA
CTCAATCAGACGCTTTCTTCTAAACTACAATATAGAAAGATGGCGTTTAT
GAGGATACTGAAATGTCGACTTTGATTTTTACCAAGAAAGTTGGTTTTAA
CAGTTTTCAAGGGATATGCTTTCTTGTTATTGGCGGATTTCTTGTGTCAC
CCAAGCACAGTGATTGAACCATCTATAACCTGATATGATATCTGACATTT
GTTACTGTCAGCACATTTCTGCTTCTTTATCTATGAAACGCACATTGTCA
TTAATGTGTGTATCTAGCTAAGAAACTTTTAAGTGAGGTGGGTTCACATG
CGACAATATAGTTGAGAGTTAGTACCTATGCCTTTTTCTTAACTATATTT
ATTTACTAAATCGTTTCCTTGGCAGGTACGAGCTTTTTTTAATCCAATTA
TGTTTTATTTGACCGATAACATTTGTTGAGCTACTAACTTCGGTTACTTT
GCTTTATTTCActgttgttcttattttttttgcaagTAGGCTACACTCcg
cactttttttataagaaccagtttAGGCTGAGACTCGACTGTTCTCATTT
GTCGGTCATTTCTAAAATATGAGTGtggtttttttaatttgttttaagGA
TTAGTAGAGCACAGTTGAGCaacgtgttcttataaagctagTTTCTAGtt
taaatgtcgtaaattttcACATTGTATCTCCATTAGTTTATTGCTAATTA
AGTTAAGATCATAAATTTCCATATAGCATCAATAAATGATCTGTCATTTG
TAATATATTGATTATATTGTTTGTTTGCTCGTTTCTTCGTCGTATCATTA
TCCTAATAGGATTTGCGAGAATCCCTTTGTTGACATATTTACATATCAAC
ATTGAAGATGAAATTAGAACCCACTTGTTGACTTTTTGAGCATGACTGGT
GCCAAAGATTTCTTGTCTCATTCTGTCTCATTCTgtaactaaaattattt
tttggaagTTTCAAAGGAAATTATGGCTTGTTGAGCAGGAAAGCTGGAAT
CGAGAAAACCGTTCTTATTTTATTAAAGTGCTTTTTCCGATCTTAATTTC
CTTtctgttttaaaattatatttttcacaaaataatGTCTTGCAAAATAA
AATGCTCAATGCTATCACTGTAGGTAACTAGTTGAATGTTTCTATAATTG
GTAATTAATTAACAAAGTATGTTTGGCCTGCCCTACTAATTGGTGATAAA
CGTCTTATGCATCAAAAGGGAACCAAATTCTCATCTTTTGAATctccttt
gaaaaaaattgatcgaTATTGTGCATTCTTGTTGTTTTTGGGTGTATCAG
TGAAAAGGTGAtttcaattttagattttttgggTGATGACAATTTATGGT
TTTGAAACTGGACAGGTACTGtgtgtttcttttgtttcttcgTGTTTCCT
GAGTGAAGTGAATGAAATCTTCACTCAATTAATTTGAAGTCTTTCATTAA
TAACATCACTCATTTGAAGATTTTAAGCATGTTAGACTCTAGCTTGTAGC
ATTTTGTATAGATGAATTGTTTCCACGTTTGGATTGCATTCGGAATGTGA
GAGTGAATAAATCCAACCTAACAAAAAGAGGGAAGTGATGGTCTTTCAAG
AATGAGATGCTTTAACAGCCGGAAGACGTTCCCAAATAAAGCTTTACCCT
CAAAAAGGTTGTTTTTAGAAAAGCTATTTTTAGTTGTGTTGTGATAAAAA
TCAATTCTTATTTTTGTGTAGGATCACCAAAACCATTATTCGTAattatt
tatgttttttccATCAAAATATTATGTTAAGTTTTCCTTGGTAACCTCCA
TACCATTAGGCTTTCATAAGCATCGAGTAATAGTTCTATCTTTGTATATC
GTGCTTGTGAAATCCTAACAAGTAGGGGAGGGGGGTATTTGACAGTTACA
TTTTTTCAATATGGGGATTTTATTTTAAACAGTTCTAAAACGAGTCTTCA
AATGAAGTTCATTGCAGCAAAATGTATACCTTGTTAAGTACTTCGTCGCA
TCAATATTCTTATAACTCACAGTAGATAACCCAGCAGTATTGGTTATTTG
TTTATTATCTATCTTTACTTTATAAATACCAAATCGATGCCATTTCTTTC
CTGTTTGGTTGTACGTCAATAGGTCACGATTTAATACATGCTGtgatgtt
ttatttatttgtttttatgatttcaattaACATCATTAGCAATTAAAACA
TGCCATATACTTTATGTTTGATGCATTATGTATACTAGTTTTACAGGTTT
GTTCTTTCATTATAATCCAATGTTATGATAAACTTTATTTTATGCATGGG
TTGCCTTTTTCAAACGTTAactaattttatgtttttttatgggATCTTAT
GTTCGTTTCATTTTGCAAGGAAATTGTGTCCGGCTATCTTATGATGCGAT
TTGTAAGTTTTTTGTACATctctaataattttttttacatgtCACATTTG
AGCTATGATTAGCAATTTTCAATTGACAGCCGTCTTAGACTTCTAGATAA
GGAgttcttttcgatttttttcgtgGTTATTGATTGTGTATTGTCTGTAT
CCACTTGTCATCAATGATGTCATTGTGTTTGGTCGACCTTGTCTaccctt
aagggaacttattttggcgggaactaattttggcggatttggcgNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
ccgccaaaattaaaaatttcgttgactcgccaaaattagttcccgccaaa
ataagttcccttaaggtagtagaTCGAGGTGGCAAATCTAATAGCTCGGT
TGTTGAACTGAAAGACCTTTTGTTCTTTCTACTattcttcaagaaaaaaa
tatctgCCTTATTAACTGTTATTACTGTATTGTGACAAAGTCACTCTGAT
TTTTCGTTTGAAATGCAAAGTTGACCTACCATACGTTTACACCACAACAG
GAATTTCTTGGCATTCTTGATAAAGACATACAGTTAATTGGTTCTGAATG
TTCATCCAATTATTTTTTTAGACATGCTCTTGACTTCTCAAGTCGCCTTT
CCATAATCAACGGAGTCTTTTTGCGCTATTTAAGTATTTCATAATGATGT
TACCTTGCTGGTTCTGATTGGGATGTTGAAAAAATACAAGATGAATGTCA
CTAGCTATCATCCACTGAGGGTCTATTGAGTTATATAATGTTGATGTAAC
TTTTGATGTCATTTTTGTATCCCTTCTATATATCTTTCGATCCCTATAAA
ACTGATAATATAATGAATGTGAGAGAATCTAGAACAGAAAAAGTAAAATG
TGGCTTTTCAAAGTGGTTAGCTatctttcaattttgttttttcaatgcTG
CAATTGAGAAATGAATCTTTAACTGTCCCAACACCATTGGCTGATTTTGC
TGCTGTTTAGTGCTTGAaattttaacatgttctttagttttaaaacaaag
aagaaaagttATTGGTTACTCAAATTATCTTATTTTGGGTTGTTATTGAG
gcgaatatttcaaaagcgAGTAAGTTGAAGCGACCATCTTTATTGTCAAG
CCAAGTACTCGTTTTTTCCGTAACATCGGTGACCAAAAACTCATAGCAAA
TAGTTCTTCTTAGCTTCTTACTAAATTTTTCCATCAAAAGAAAGGCAGGT
TTGTAGGCCAGGTTTCAAGCAGCTTAAATTTTTCTCTCTTGCAAAGGCCA
TATTTCTAAGCGCTTGGAGGGGCTGATTTGTCAAAACAAGGCCTTCTTTT
CATCGAAATCACTTAATCTTGACAATAAATCCTTCAAAATCTCAGGCTAC
TGATGTCATTAAGTCCCGAAAGAACTGAAAGAAAACATGGttttattctt
tttcaaaaaaaaagagaaggtGTTGCGAAATCACTTGGTGatatttttca
tccaaatttgaAACATTTCCGTTGTTGGTGGGCAGAGGACGTTTTatgag
aaaactttttgaactgTTGAAGTTGACTTGGTTATAACCCGAGTGACGTT
TCTATCTCATTCATCTGTGTTATTGTAGGAGAAAGTAGTTGGTTGTTGTT
TTACATATTCTGAAAATCTTTCTTCTTTGATATGGTTTGTTGGGATGGTG
AAATGTTGCATGTGATTGAGGTACTACAGTTGAAGTCTTCTATTCGAGCC
GTTTTCCTTTTAGAAACAGAGAAAGGGATTTTATCTCAACCGTCTTTCCA
AGTAAATGCTTGACTATCATTATTTCGTTGTGTCATTCAGAATTTTGATT
TGGTAGGAAAAGTGTCAAACACGTATAACTAATTGTCATGTACCATTTGA
AATGCCATAGATGAAAGTGTATAATTTTAGCATTGACGTGTTTTTTACTT
AATgggaaacaatttttgaaactcCATCCATCGGCAATACTATCTCCTTT
TAtagaatgttttaattttcaagcttAACAGAATTTCCCATGCGTCTACG
AAGGATATCAGTTTTTACGTCACAGCACTTTGATGGAAATTGTTTATAAA
GATGCGTATTTTATCCTTTCTCATTTCCAGTTGAGAGTTGTCCAGGAAAT
TGATGATGAACTTACTGAACAAgtacaaaaagaagaaagtaacACAGATA
CAAACGAGAAGTCATCGAGTCAACACACACCAACACGAAGTCGAAGTACC
CGGGGCAATACTTTCTTAACAGCCATGGGTTTACAAACTAGATCATCGTC
ACTGACTCAACACCATCACAAAAACATGGAACATCTGATGGCAGTCAGAG
CGAAATGTGTTGAAGAGCTGGTCAATACAGAGAAAGATTATGTACAAATG
CTACGCAATATCATAGAGGTACGTTTTGTAAATGACTTCTAGTTACCTAA
AATTCAGACACTTGCTAATAATGTGGCTATGGCTATATATTAAAGTTATC
TAATTTGCACGATTGAGTACATCTGACATCTCTATATCAATCGCTCTTTT
TTACATTGCAGGGATATTTAGAGAAAGTGCGTCAAGAGAAGAGCCTTTTC
ACTGCAGCTGATGCAGAGACCATCTTCGGCAACATCGAAGAACTTTATCA
CTTCCATAAAGAATTCTTGAAAGAacttcaacaagccatcaaatTCGATC
GAATGGAGGAATCCATTGTCGGGCATCTTTTCATAAAACACGTAAGTTGA
CTTTTGATTAATTAGTTCGTCCTCTCAATCTACTGAGCTCTGAACTGGGT
gtatttcaatttctttcaacTTTAATGGTAAGCAGGGTgtcactttttca
tttttttgacgaAGTGGTACATTAAGGAAAACTCTAATCCACCCGTGACC
CCGTTATTATTTCTGGTGCTTGAGTTTAGTAGTCAAGTTCTGCTCCGTCA
ATCTTTTGACTACGAATTTGTTATGGGAGATTCTTGTGAGAAACATTATA
TAACAAGGAGACCTCCAAAACATATGTCCTTGGATTATAGCTTCTCAATT
TCACAGATTATAAGTTTTCGCACGACTTTAGNTATGTCCTTGGAttatag
cttctcaaattcacagATTATAAGTTTTCGCACGGCTTTAAATAGAACTG
ACCCAGTGATGTGACTTTTATTTATTGTTTTGGTTATAGAAAAACAGATT
CGAGATCTACTCAAAATACTGCAACAATCAGCCTCGTTCCAGTGCTAGAA
TCTCACGGTTgatcaaagaaaagaaatacgAATTATTTTTCGAAGTAAGT
AATAGACCCTCTAGGTGTTATTATCGGATTCTGTTTGAATATTTGGGGAA
TTTCTTGAATCTCAAACATTTAGAAACCCGTCAATCTCAACTAATGTCCC
TGAGGCGCCATAGGATTGATGAAGATTTGATAGGATCACTTCATTGAGAc
tcctttcttgttttttctgcGGATTTATAAGATTTAAAACCTTCGATTCT
CATGTGCTCGAGTTATGTGCCTTAGGCAGATTCATCCATTAAAGAATTTA
TACCGCTATTTTCTTGTTAATCGACCATTTAGCGGTGGAATtctgatcga
aaaaaaaatctgacaaaACTCTTCACAAATATGGTTGATAAGATGATCGA
TAGATGGTCACATTTTTCTCACTGTTCGACAAATTCTTTTTCATAATCCA
AATATAAGACCGTTGacttaaaattcttttttaccTTGCAACTATTTTAA
GaagatttatctttttaaagctacttttaaAACCTGCGAAATTTTTATTC
AGGTCAAACAGCATTTTTGATATTGTTTCATCTGCAGTAGAGGATTTACA
CTTGGGTGTTTATGAGAAATTCGTGATCGACGCATAcgattaaaagtttt
tttcattcgTTTTCGAGGCCTCTAACTGCTTATTTCCCGGATATTTTCTA
TTATTTCGAACCGTTTTAACACCTAACGGTCCCGGATGACGAATGCTCCc
gtttgaaaaaactcaaacgTCCTCATTTAAACCACTTATAAAGGTGTCTC
AAAGTACCACAAAACTTCCTTTAATGATGAAATAGCGCGTCATATTTATA
AAtactttttatttcttttctttttatagacGTGCCGTTTACGTCAAAAC
ATGATACGGCTTTCGTTGGACGGATTTCTTCTTTCACCCGTCCAAAGAAT
TTGTAAATATCCACTACAATTAAAAGTAAGTATCCGGATGCTTtgtctat
ctatatatttcatactaAAAGGTCCTGGGAGCCATTATCCGTACATTATT
ACAAAACAATTGATGTAAGGTATTCGCTTACGCTACTCAAGTCATTTGTA
GAGATTGTTGTCTCAAAATCCTTGTTTACCTTCTACCAATTTTACCCATG
ATTCATAGCGGTCTAAAAAGATAGGGTTTTGAATATTAGAAGGTTGGTTG
CTGACGAGTATTTTGTAAAAGGAAACTGTACCTGTATGCTGGATATCATT
TTATTTACTTATTCCTTTTCCAGGAATTATTGAAACATACACATTCTGAA
CACGAAGATTATAATACGCTCAACGAAGCGAAAACATGCATGCAAAACGT
TGCTGCTGTCATAAACGAGCGAAAAAGACGCTTAGAAAATGTAAATAAAC
TTGCACGGTGGCAATTGACTGTCTCTAATTGGAAAGATGAAGACGTGGTG
ATGAAAAGTAGTGATTTATTGTTTAAAGGACCTTTACTGAAGATTAATAA
CGGTCGAGAATGCGAACGTTTTGTGTATTTATTTGACCATCAGTTGTTAT
ATTTCGTCAAAGAGGAAAACAGACGACAGCCATTATGTTACCGAGGACGC
GTTGACTTGGATACGGCGATAATAGAGAACTTGGGAGATAACCATGTTTT
TATACGAGGTGATACTGTGTCAAATGTGTGGCGGATATGGAACACGAGTA
AAACGAAATGGTGTTATTTCCGCGCGGACACAGCGGAGAAGAAAGAGAAT
TGGTTGAAAGCgcttgaaaacgaaagagaACATGTTAAAGAAGAACAAAA
GCAAGGTAcctatcaagtaccatttttaaattttttaaatacctTAATGC
TTAATGTTCTTGTCATTTGAAAGACTACACCTAATTTCATAGGGGGTAGT
CTCAAGCCAGCCCCTCATTTTCCCCTGTATATAATTCATAAGTGCAGTCA
AGGCGACCATCGAGCACTTCGtatattttgatcattttaagTAGAGCATG
ATTTGGAATACTCATTATTTATATTCTCATTTCCCGTTCAGGTTTTACAG
TACTACCAGAAGTTCGAAGTGCGGCCATGGAAAGCGCTTACACAAAACAT
ATAGCAGGTAAGATTCCCTTTTTAATGGATCAAGGCATCATCAACTTTAT
AAAGGTCCTATCTGAATGTGGATTCTCTTATTGAGGGCGTAAGGgtaaat
cgttcaaataatctCGCACcctttttaaattaaataaatcaGAACATGAA
AATTCAATTTATCTTTCCTCCATTTTTCAGGTGTGAAACGTGGTCGGATG
AGACGTAAATCCATTTGTACAAATCATCCGGAGCTGGAAACAACGTACGC
TTCCGGACCGTTAGCTGGCCCCATTAACCGGACTTTTTCTTCGACTCTCG
CTACATCCTCCTCCTCATCATCCACGAGGTCTTCCAATAACTCAAAATCA
TCCCTTTCAACGTCACCTTCAAGTCCAACgaacaataataataacaataa
tatgaCGTCATCGTACTCAATACAAAGCGAAGACGGGCCAACCGTTCGGA
AAAGGGTCCATAAACCGAAACGTAAAAACTCTTTTCGATGGTCATTAAAT
AGtactatatttgaaaaatacttttgattttttcatatacattttcttca
tcttttatATGAAAATGACCTCTCTCGTGACCTTTTGTCTCATTTTTCTT
TGAAGTCGTTTTTatgtattcaatttcatttgtttcgttttttgtcattt
tttgataataatttttttgcgaatattttctttttacacCTTCGTCACTT
TTGTCTGCATCCACCTACGTATAACTGGGAAGATATTCTCGAATATTTTA
CAAGGGACCGAGTTCAAACTTAGGTTTAGTTTTTACTCACGATTATCAAA
CTTTGAGGTTTCTTTGAacttaaaatatatttcttacactcttttttatg
aTTATTTTATAGTTTCCATGTTTTCTGTCCAATTTTTATGTGACcaattt
tgtataaaattttACCTAAATTTAATGATTGCCCCTGTTTATACTATTTT
ATGCCAAACTGAATATAgagataaatttattttttatatgaatAAAAGAC
AGAAATTCTTTAGTATAAAATGATTACAAAGTTTCCTTATCCATTTTCct
ag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005552-exon-sc0000054-1491911889:146970..147044 | TCONS_00005552-exon-sc0000054-1491911889:146970..147044 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:146970..147044 | TCONS_00005552-exon-sc0000054-1510915933:146970..147044 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:146970..147044 | TCONS_00005552-exon-sc0000054-1575043694:146970..147044 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:152550..152837 | TCONS_00005552-exon-sc0000054-1491911889:152550..152837 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:152550..152837 | TCONS_00005552-exon-sc0000054-1510915933:152550..152837 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:152550..152837 | TCONS_00005552-exon-sc0000054-1575043694:152550..152837 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:152981..153160 | TCONS_00005552-exon-sc0000054-1491911889:152981..153160 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:152981..153160 | TCONS_00005552-exon-sc0000054-1510915933:152981..153160 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:152981..153160 | TCONS_00005552-exon-sc0000054-1575043694:152981..153160 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:153609..153713 | TCONS_00005552-exon-sc0000054-1491911889:153609..153713 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:153609..153713 | TCONS_00005552-exon-sc0000054-1510915933:153609..153713 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:153609..153713 | TCONS_00005552-exon-sc0000054-1575043694:153609..153713 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:154549..154644 | TCONS_00005552-exon-sc0000054-1491911889:154549..154644 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:154549..154644 | TCONS_00005552-exon-sc0000054-1510915933:154549..154644 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:154549..154644 | TCONS_00005552-exon-sc0000054-1575043694:154549..154644 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:154943..155474 | TCONS_00005552-exon-sc0000054-1491911889:154943..155474 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:154943..155474 | TCONS_00005552-exon-sc0000054-1510915933:154943..155474 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:154943..155474 | TCONS_00005552-exon-sc0000054-1575043694:154943..155474 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:155711..155776 | TCONS_00005552-exon-sc0000054-1491911889:155711..155776 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:155711..155776 | TCONS_00005552-exon-sc0000054-1510915933:155711..155776 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:155711..155776 | TCONS_00005552-exon-sc0000054-1575043694:155711..155776 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1491911889:155950..156821 | TCONS_00005552-exon-sc0000054-1491911889:155950..156821 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1510915933:155950..156821 | TCONS_00005552-exon-sc0000054-1510915933:155950..156821 | Clytia hemisphaerica | exon |
TCONS_00005552-exon-sc0000054-1575043694:155950..156821 | TCONS_00005552-exon-sc0000054-1575043694:155950..156821 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000054 | supercontig | sc0000054:146970..156821 + |
Blast
BLAST of TCONS_00005552 vs. Swiss-Prot (Human)
Match: ARHG4 (Rho guanine nucleotide exchange factor 4 OS=Homo sapiens GN=ARHGEF4 PE=1 SV=3) HSP 1 Score: 303.908 bits (777), Expect = 1.288e-91 Identity = 153/392 (39.03%), Postives = 239/392 (60.97%), Query Frame = 1
Query: 289 VRAKCVEELVNTEKDYVQMLRNIIEGYLEKVRQEKSLFTAADAETIFGNIEELYHFHKEFLKELQQAIKFDRMEESIVGHLFIKHKNRFEIYSKYCNNQPRSSARISRLIKEKKYELFFETCRLRQNMIRLSLDGFLLSPVQRICKYPLQLKELLKHTHSEHEDYNTLNEAKTCMQNVAAVINERKRRLENVNKLARWQLTVSNWKDEDVVMKSSDLLFKGPLLKIN--NGRECERFVYLFDHQLLYFVKEENRRQPLCYRGRVDLDTAIIENLGDNHVFIRGDTVSNVWRIWNTSKTKWCYFRADTAEKKENWLKALENEREHVKEEQKQGFTVLPEVRSAAMESAYTKHIAGVKRG--------RMRRKSICTNHPELETTYASGPLAGP 1434
+R + E+++TE+DY++ LR+I EGY+ + R+ +F+ TIFGNIE++Y K F+K L+Q +R S +G F++H+ F+IYS+YCNN P + +SRL K KY FFE CRL Q MI +SLDGFLL+PVQ+ICKYPLQL ELLK+TH +H D+ + A M+NVA +INERKRRLEN++K+A+WQ ++ +W+ ED++++SS+L++ G L ++ + +R +LFDHQL+Y K+ RR L Y+GR+D+D + +L D ++ N +R+ + E+K+ WLKA ERE V+ +Q+ GF++ R AM +A + + G + R + ++ +N P+ + + P P
Sbjct: 284 MRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITELQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSNRPQQQVLVLAEPRRKP 675
The following BLAST results are available for this feature:
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