TCONS_00005402 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005402
Unique NameTCONS_00005402
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005402 ID=TCONS_00005402|Name=TCONS_00005402|organism=Clytia hemisphaerica|type=transcript|length=1343bp
TGGATTATTCTGGTTGGAACTATCTTTCCAACAGTGCATAGCTTTTTAAG
ATAGCATAAATGTGTAGAAAATTTGCTAAAGAGGTAATGTGTCAACATAC
TTTTGTAACAAAATGTACCCCTAGTTTCCAGGAAAATTTGTCTAAGGTAC
CACAACCCCTTTTCAGTGCCTTCAATAATaccaaatttttcaataattca
agtttttttgtacTGCAAATAGTgcgatgttttaaaaattattgagATGT
ATTATATGAAGGGAGGCAATACAAGTCTGTTATCTTCTATCTGCCGAGAG
TGCTCGATGATATCAGAGCttgttcaaattaaaagaaagagactttgatt
tattacttagaactttaagtttcatgccgGATGGACGACAATCAACAGCT
AAATGAAAATTTAGTGAAGAAGTGATGGtttccccctcattttggtcatA
AATCACTTATAAAATGACATCAAATAACACCCATTCAGTACAGAAATCGG
CCATACTCGCTacaaagtcttctatatagtttttcaagAGCTTTCAGATT
CTTTAATTAGTTTAGGcttaaaatgagtttgaaatttccataaaaattgg
GCCCTTGGGCTTTAGCCTACTTTTTCAATAAATGGGTCCAAAAATAGGGG
CTACCCTTAAAATCATTCTGGGAAGCCCTTCTAATATCAATCCATAGGGT
ATTAGGCATGTCTGGTCCAAATTTGgtgctttgttccaaatttgcacAAT
TTTTATGGAATTTGTTACAAATCAGGCCTACTAGTTctgaaaaagtgaat
ttttttaatgcaGTGATTAATTTTCCAAAACCATGGACGAAGAACTTTTG
CCCTCTAGACATTCTAAATGGGTGTTTTCACAATTTTAATGGCCTACAAT
GTCCAACTTGATTATGAACAGCATttatttcgaatgttttgaaggAGTTC
AAATAATGTCAGTGGTgataaatatctttattttgaaCTAAATAAACTAA
ACTAATCGCTGCATCATAGCTTCAAAGTTAAATCAACCTAtttaaaactc
aatttttaCCTTCGAAAACTACTTGTCAGACTCATTGCAATACATCTAGT
TCATTTTACTTTAAGATTTTGGACTATCACAGGGctgtaaataaatattt
tagtcaATCTGCAGACATCATGTCCGATGGAAATTTCttgcgtttttagg
caaaattgatttttggcaCCCCCCCCAGGATTCTGGGGGGGAGGGGGTTT
gacgattttcaaattttttgaatcaggtgggggttgagttgatgaaaaaa
ttcaggtgggggtaaccctataCAGGTGGGGGTGGACATTTTC
Run BLAST on NCBI

transcript from alignment at sc0000052:613485..614827

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005402 ID=TCONS_00005402|Name=TCONS_00005402|organism=Clytia hemisphaerica|type=transcript|length=1343bp|location=Sequence derived from alignment at sc0000052:613485..614827 (Clytia hemisphaerica)
GAAAATGTCCACCCCCACCTGtatagggttacccccacctgaattttttc atcaactcaacccccacctgattcaaaaaatttgaaaatcgtcAAACCCC CTCCCCCCCAGAATCCTGGGGGGGGtgccaaaaatcaattttgcctaaaa acgcaaGAAATTTCCATCGGACATGATGTCTGCAGATtgactaaaatatt tatttacagCCCTGTGATAGTCCAAAATCTTAAAGTAAAATGAACTAGAT GTATTGCAATGAGTCTGACAAGTAGTTTTCGAAGGtaaaaattgagtttt aaaTAGGTTGATTTAACTTTGAAGCTATGATGCAGCGATTAGTTTAGTTT ATTTAGttcaaaataaagatatttatcACCACTGACATTATTTGAACTcc ttcaaaacattcgaaataaATGCTGTTCATAATCAAGTTGGACATTGTAG GCCATTAAAATTGTGAAAACACCCATTTAGAATGTCTAGAGGGCAAAAGT TCTTCGTCCATGGTTTTGGAAAATTAATCACtgcattaaaaaaattcact ttttcagAACTAGTAGGCCTGATTTGTAACAAATTCCATAAAAATTgtgc aaatttggaacaaagcacCAAATTTGGACCAGACATGCCTAATACCCTAT GGATTGATATTAGAAGGGCTTCCCAGAATGATTTTAAGGGTAGCCCCTAT TTTTGGACCCATTTATTGAAAAAGTAGGCTAAAGCCCAAGGGCccaattt ttatggaaatttcaaactcattttaagCCTAAACTAATTAAAGAATCTGA AAGCTcttgaaaaactatatagaagactttgtAGCGAGTATGGCCGATTT CTGTACTGAATGGGTGTTATTTGATGTCATTTTATAAGTGATTTatgacc aaaatgagggggaaaCCATCACTTCTTCACTAAATTTTCATTTAGCTGTT GATTGTCGTCCATCcggcatgaaacttaaagttctaagtaataaatcaaa gtctctttcttttaatttgaacaaGCTCTGATATCATCGAGCACTCTCGG CAGATAGAAGATAACAGACTTGTATTGCCTCCCTTCATATAATACATctc aataatttttaaaacatcgcACTATTTGCAgtacaaaaaaacttgaatta ttgaaaaatttggtATTATTGAAGGCACTGAAAAGGGGTTGTGGTACCTT AGACAAATTTTCCTGGAAACTAGGGGTACATTTTGTTACAAAAGTATGTT GACACATTACCTCTTTAGCAAATTTTCTACACATTTATGCTATCTTAAAA AGCTATGCACTGTTGGAAAGATAGTTCCAACCAGAATAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003076XLOC_003076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005402-exon-sc0000052-1491911889:613485..614827TCONS_00005402-exon-sc0000052-1491911889:613485..614827Clytia hemisphaericaexon
TCONS_00005402-exon-sc0000052-1510915933:613485..614827TCONS_00005402-exon-sc0000052-1510915933:613485..614827Clytia hemisphaericaexon
TCONS_00005402-exon-sc0000052-1575043694:613485..614827TCONS_00005402-exon-sc0000052-1575043694:613485..614827Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:613485..614827 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286117 0.354455 0.899698 1.14477 1.89317 1.38464 1.6859 2.21763 0.599774 0.446857 0.49891 0.631308 0.711981 0.789964 0.871667 0.613909 0.728063 0.470958 0.828426 0.993768 1.13648 1.33118 0.261446 0.333895 0.824232 1.03174 1.07252 1.31333 0.814375 1.00819
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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