TCONS_00005324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005324
Unique NameTCONS_00005324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2299

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005324 ID=TCONS_00005324|Name=TCONS_00005324|organism=Clytia hemisphaerica|type=transcript|length=2299bp
TTTTCCTGCGATCACGTGACTAAAAAAACAATTGTTTATGAATGGACGAA
TTTGattggctgtttaGAAAACACACAACATAAAAGTAAAGTTGATGGAT
GATTATAAAAAAAGACAGAAGCGTCCTTTCGGttaatatcaaaacaaaac
tttgcATCGCTCGGTCATAGTTTTAAGAAAAGAGGCTTAAAAAGCACAAC
CTCgcgatttttgtttatattttgaagTTTCAGTGCTGCTGTCTTCACTA
CGTACGTTTTGTATTGCAATCAGATCGTTATTAAATCAAGATGGAGTTTT
ATatgatttgttttttgttgttttcaacgTGTTTATTGGTTGTTGTTTCC
AAGCCTGCAAAACCTAtTCTCATCGAAGGAGACATCGTCCTCGATCCGAA
ATTACGAAAGATTCGCGCTAACGCCATCATTCACGAAGAAGGAGAATGGA
GTTCACATAAACGTGTCAAACGGGGCAACACGCTCACCAACAAGAAACCT
CATGAACATCGATGGAGAAATGGTTTCATCCCTTATAAACTATCATATGA
ATTAAGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTTACGAAGTTG
AAAAATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAAGATGACTAC
GTGGAATTCGTAAAAGGCGTTGGATGTTACTCCAGCGTTGGAAGACAAAA
CGGGCGACAAGTCGTTTCAATTGGTGAGGGTTGTGAAACAACAAAAACTG
TAGTTCATGAGTTACTTCACACTGTGGGAATGTTTCATGAGATGAGTCGA
TATGACCGTGGTTTATACGTCAAAATCTTGTGGTGGAACATACAAAGAGG
TGCCGAGAAAAACTTCGCCGTCTATGATCACGGTGTAATCGACTCAATGA
ATTTTCCGTACGATTTTGAAAGCGCAATGCATTATTATAACAACGAATTC
ACTAAAAATGGACATGACACAATCCAGTCTTTAGAGAACCCCAAATTAAG
AATCGGTAATTATCATGGCATGAGTAAAATGGATGTCAAAAAAGTATACC
AGTTTTATAAGTGTTACAAGAAGAAGGAACGTCCGCAAAAGAACGAATGC
AAGGACAAATATAATTGGTGTAAGAAATATGAAAATCATTGTTCCACACA
GTGGTTTNCAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAAGAAA
TATGAAAATCATTGTTCCACGCAATGGTTCGCTGAAAGTTACTGTCAGAA
GACATGTAAAGTTTGTTTATAGAATCCATTATAATCAATtatcatttatt
tttaattaggtagaatttttcaattttaaaatctgaaatagTAGTACTGG
ACTTATGAGTTTTAAGATTCGGTTAAGcttcaaaagctttttaaatttta
aaatctttattttcatgataatcatgacgtaatgttttatacggaagcac
ccagaTTAGCCAGGGCGTTTGTCATTAGTTTTATtgtataaaattcaaaa
tcagtGGCGAATACCCAGTCTTTTTTGGTTGCTGctatataaaacattac
gtcatgaatatcgaGAGTAGTAGTACTGAACTTATGAATTTGAAGATTCG
GTAGAGCTTCAAAAACCAATTCTTAAACGCAGGTCATTTGAAttaaatgg
tgaaaatatgCGTATGTTGTgaaatcccagctggcacacaacgttgtttc
aacgttaatctaacgctcacaacgtccatataacgttagattaacattaa
aacaacgttgtgtgccagctgggatgctTTAACTAATGTTTGCGTTTGCT
AAAAGTTACCATGACTACTATCGTTCAGAAAGAAACAATTTAATGTAATA
TAGAATAatgtaaatattaaaaaatatatttagaaACTATACATATGGAG
AGATTTGTACTATATCGAGAAGTATTGTAGATTTTATTGCCTGGTATCGC
CTATATGGGTGTcgaagttgatatttttaaggCGACGGCATCTATCCACC
AAAAACACACATCAAATTGTTTTGGTGTATGGCTTATTTTATTTATGGAA
AAGAGATTATACATTTATATATGCTTTGTAAATAATATCGGGTGcttata
taaaaatgaaaacaagttggacaaaaaacacaaaagaaacaTTACAATTG
ATAATTTGCGCATTTTTTATTGTCCCCTTTTGCTGAAACTACTGAAGTGG
GAACAACCTTAGTCTGGAGctccatactctctattcaaacttacaccgca
taagcaaaaatcccatcagaagctactcattgagagtatggtatttttg
Run BLAST on NCBI

protein sequence of TCONS_00005324-protein

>TCONS_00005324-protein ID=TCONS_00005324-protein|Name=TCONS_00005324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MEFYMICFLLFSTCLLVVVSKPAKPILIEGDIVLDPKLRKIRANAIIHEE
GEWSSHKRVKRGNTLTNKKPHEHRWRNGFIPYKLSYELSDIARESIKEAF
YEVEKYTCIQFSPWKGEDDYVEFVKGVGCYSSVGRQNGRQVVSIGEGCET
TKTVVHELLHTVGMFHEMSRYDRGLYVKILWWNIQRGAEKNFAVYDHGVI
DSMNFPYDFESAMHYYNNEFTKNGHDTIQSLENPKLRIGNYHGMSKMDVK
KVYQFYKCYKKKERPQKNECKDKYNWCKKYENHCSTQWFXKERMQGQI
Run BLAST on NCBI

transcript from alignment at sc0000052:127321..135395-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005324 ID=TCONS_00005324|Name=TCONS_00005324|organism=Clytia hemisphaerica|type=transcript|length=8075bp|location=Sequence derived from alignment at sc0000052:127321..135395- (Clytia hemisphaerica)
TTTTCCTGCGATCACGTGACTAAAAAAACAATTGTTTATGAATGGACGAA
TTTGATTGGCTGTTTAGAAAACACACAACATAAAAGTAAAGTTGATGGAT
GATTATAAAAAAAGACAGAAGCGTCCTTTCGGTTAATATCAAAACAAAAC
TTTGCATCGCTCGGTCATAGTTTTAAGAAAAGAGGCTTAAAAAGCACAAC
CTCGCGATTTTTGTTTATATTTTGAAGTTTCAGTGCTGCTGTCTTCACTA
CGTACGTTTTGTATTGCAATCAGATCGTTATTAAATCAAGATGGAGTTTT
ATATGATTTGTTTTTTGTTGTTTTCAACGTGTTTATTGGTTGTTGTTTCC
AAGCCTGCAAAACCTAGTAAGTAATTCATGTAGATTTACATATTGTATCT
CTGTATGGACTAATGCTTGAACCCTAGCCCAAAATAGTCTTTTCAAGGCT
TGCTAATAACTATTCTTCAAGCCATACAACTATTTTTGTATGGACTAATT
CGTAGCTTGATGCTTGAATCTTAACCCAAATTAGTCATTTTCAAGGCTTC
CTAATAAGCTAATAACTACTCAAGACTTACTCCATACAGTATAGCATTTT
TGCAGAACAATTTTGTAGTCTGAAACAACGTTAGGATACTATGCTATGGC
CTTGGTGAGAAAGATGAAGGATTTTCTTGGCATGAATTTGAATTCTTCAA
GAGATTAACCAACGGGGAAGGAAACTCGACATGACTGGGTCCTAGCATAT
GATAAAAATCTCATTCCATCCAAAACCGTTCTTTTAATTTCCTGCTAATT
TCTATTTTTTATCAAAATAAAAAAAACTTGTCATAAATTGCAACATTTAG
AACATTGTTACAATACATCAATAACATGTAATTAACGTTAACTGCGTTCA
TCCAAGCAAATTGATAAAAAGCTATTGCATAATTTCTTAATGTTTTGTTT
AATATTGACTTCATAATTAATTGCAAATAAAGCGTGCTGTTTCTTGCACA
GTTCCCTTATGTCGGGTTGGCTTTTCCAACCCAACCTTATACATGGTGTC
CGAGAAAAAAAGTATAATAGCAAAACATGTTTTGAGGACTAAAGGTATTT
TATGTACTTTGTATTATTGCGTATTAACAAAAGATAAAGAGAGAAACAAA
CTTTTTTTCCAGACACCCTGTACACGTTTTTTTTTATAAGAACAAACTAT
ATAAGAACATAAGGCTTCGAGGCCCAAAAATTTAAGAACATTCTAAGAAC
ATTCTAAGGCTTTGGATACTTAAAAATATGCATTTTCTTAAGAAATTACA
TCAAAATGCTCAAAAAATACTGAAAATAAGAACAACATTTTAAGAACATT
TTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTCGAAAATT
TTTGACGTTCTTATTAAAAAAAAAACGTGTAGTCAAATTCGAGGTAAAAT
TCAACATTTAAAAGCGAGGGAACCCATTTTTTTGTCTCAACCAAACCTTT
GGGAAGGGTAGCGGAAAAACTATAAAAATGCTTTAAAAAGGAATATCTTT
TTCATTCAGTTATGAACGGAATCTACACCAAATCACAGGAAACACTCAGT
TTGCGCAATTTATAGATCACAAAATAAAACATCTTTTCTTTGGTTTACCA
CATGAGGTCCAAGCATCAACGATATACTTTTCCCACAAAATCCCCTTTCT
TCTCTAAAGCCCTCATTTTAGCATTTCTACCTAATCCTTTTTGTATACAC
GAACAAACTATATAAGAACGTAAAGACTTCGATGGCCAGAGAATTAAGAG
CAATTTAAGAACACTGCAAACCTTTGCAGACTCTAAAACACCCAATTTCT
TAGGTACTCGCACAAAAAAGAGTCACAAAATGGTGAAAATAAGATCACTT
TTAGGTTTCAAACTAAAAAAGTTTAAGAACATCCAAAGGTTTCAAAGATC
CTGGACGTTCTTATAAAAACGTGTACGCGATGTACAAAAACAGGTCTGTA
TAAAAGAAGGTATGAATGAACGAATGCTGTTAAAATTTGCCTCTCCTCTA
TGTTTTAAATGGAGAGGATTTAGTACATCAACGTTATATCAAAATTGTTT
CTGCTAACATCCGTTTCGTACCTCATATATACAAAACAACAAAAGCTTTA
TATTAAGAAAATGTTTTGTTGTCTTTTTAGATAAGTATAGGGAAACGGTG
TATATTTTTGAAACAAGTGTTTGGGGAAAGTTTGTTTTAAGATTTTTCAT
CATAATAAAGAGCTATCAAACTCATTGATGGATTGTTGATACGGAACTTC
TCATAAGCTACGGATGTCCATTGTATAAGTAAATCCTATTCTCAATTTCC
CGATAAACCCTTCCATTGTGACAACAAAACTTCATTGATCGCTTCTGTAA
AGTGATCCCACAAAACTGGATCAGGAAGTGCTCACATATACACAATCACA
ATGACAGAATACAGCTTCTTAAAGCTGAAAAACCTTTATTTGATGGCAAA
AGATTGAGTTAATCTCGTTTGAGGTATATCAATCTCATGCAAGCGCATTG
ACTTTCGCAGGGTGCATTTTTCTTACCATTGACGTCAAAAGAATAGAGCC
CACTTCCGGACCATTGCAAAGTCGCCCTACACTGCATGCTATGGTTTATT
GACGAGAGCCTCCAATGTTATATAAGGAAACAGGATCAATGTTAAAATTT
CCAATGGGTAATGTATAAATCAGACCTTAAAATAGACGAAGAAAGTTTGT
GATTGTTTTAAAAAGTTTGATGAAAAACGAAAAACCGCTAAGGCGATATA
ACGATTAAACAAGGGTATTAAATAAAAAAAAATATTCTCACTTGGGAGAC
TTATCAAAATGTAACTGTCCAAAAATTTCATTTTTTATTATCTGTTGATA
GAGTGTCTCACCGTATATTTGAATAACCAGGAAAACATATATCATTTTAT
CATCAAAACATCAAAACAAGTGAAATTGATAGCCCCCTCTTAAAGAAGAT
TTATCAAAAATATCGTGGGTAGACAAGAAAAATCAGCAATAAGATTTTTA
TCATGTAATCTTTAAAATGAAATCAATATCTTTATGTTTACCAAAACAGT
AGAATTGAAAATAAAACGTTCCCCAGATAACGGAAGAATTTCAAAATATT
GGACACCCAGGCTAGTTGTAAAACATATGATTGTGTAAGTTAGACCATCG
GCTAAATACTTCCTAAACGACTTAACTTGACCTTTACGTATTTCACCCGG
ATTAATTTCTTTTAAAGTGACAGTTATTTTTTTTACTTTTTTCGCGGTGT
ATTAAGAAAAAAGCGGCGAATCTTAAGAAGCTAACGGTCTTACATGAAAA
GAATGATTTTGAAAAATGGAGTGTTTTGATCCCCTGTCAGTAAGTTTGAA
AGAGATGTCAACTTTTTTATAAAGTAAGAAAAATCATTAATAAGGTGATG
ACATACAGCACATTCAAACACTTTTGCGACCATGACCACAACGTTGTTTT
AACGTTTATGTAACGTCCATAATGTCCATGTAACGTAAGATGAACGTCCA
AACAACGTTGTGTCTCGCTAACCATACTGGACAAGTCGCAGGTCATGAGA
TTTTTAGCCATTCTAGAAATTATTCGATCATTGTTTAATTCGGGAAATAA
AAAGTCGATAATTCGTGGATGAGGGTATTTAGTCAAAAGAAAAGAAAGCA
ATCAGCTTCATTTGTTGAAAGACCACCTCTGGTTAAAATCAAATAATCTT
ATTAAATGTCGAAAGAGACTTGAAGCGTCCAATCTTTCCTCTCATCCCCT
AGGTAATCATTTTGCATGAACAAGCAAAAGTCTTAACTACTTCATAATCC
TACCAACTGGTATTAACATTCCATTCCACTTTCAAAAAACTGTCTGTAAA
AGTCATCATCAAAAACTTGATAAGCCACTAATAAGACAAATACAAGTTGT
GACCTTTCTACTATTTGAAGTGACCCTCGACTGATTAAAATACTGCTTTC
AAAAAACTATATATTTCATGTATTTTTGAAGGAAAATCCATCTCCAAATC
CTTAGAACACAGCATGAATAAAGACAGCAGCAGGATAGATTTCATGTATT
TTTGAAGGAAAATCCATCTCCGAATCAGACTCCTGAGTGTTCAATGAATT
CATTGTTTAAAGGGAAAATCACGTGAAAAAGTAAAGAAAATATGTATTTT
TGAAGGAAAAAATATATAAAATCGCATTTCTTTTCTGTACGGGAAAAACT
TGTTAATTTTGAGGGGGAAGAAGAAATCAAACTAATGACACATTTTCTTT
CATTTTACAGTTCTCATCGAAGGAGACATCGTCCTCGATCCGAAATTACG
AAAGATTCGCGCTAACGCCATCATTCACGAAGAAGGAGAATGGAGTTCAC
ATAAACGTGTCAAACGGGGCAACACGCTCACCAACAAGAAACCTCATGAA
CATCGATGGAAAAATGGTTTCATCCCTTACAAACTATCATATGAATTAAG
TAAGTTTTGGAATGATACACGTTTTTTATTATAAAAACACATAAAGGCCC
GGCGGAAGCGGGGAGACTGGGGAGACTTCAGCCTCCCCACTTTTGAGCAA
ATGAGATTTTTTTGCTCGAATTCCTAGCAAATTTTATCTCATTTTGAGCC
TTCAACACACTTTAACGGTTGTTCCGCCGGGCCTGAACATCCAATATTTT
TGAAACCTTCGGATGTTTTGTATTAACTGTTTTGAGTTTTAATCCATAAA
TTGTTCTTAATATGTTCTTATTTTCATCNTTACAGTTCTCATCGAAGGAG
ACATCGTCCTCGATCCGAAATTACGAAAGATTCGCGCTAACGCCATCATT
CACGAAGAAGGAGAATGGAGTTCACATAAACGTGTCAAACGGGGCAACAC
GCTCACCAACAAGAAACCTCATGAACATCGATGGAGAAATGGTTTCATCC
CTTATAAACTATCATATGAATTAAGTAAGTTTTGGAATGATACACGTTTT
TTATTATAAAAACATCCAACATTTTTGAAGCGTTTGGGTTTTTTTTATTA
GCTGTTTATCCATAAATTGTTCTTAATATGTTCTTATTTTCATCATTTTG
AAAGTATTGAGAAGAAGAAATTAGGTGTTTTAGAGTCCTCAAAGCCTTAA
AATGTTCTTAGCTTGTTCTATATAAAAACATGCTAGACAGTTATTTCATT
ACAGGACAGACTAAACTTTTTAGTCGAAACAAAAATCTCTCGAACAATCT
CGTTTAAAAATGACAGTAAATCGTCTTTGCGAGATAAACATCTTATATGC
CTATTGTCAGTCTGCGATAAGAGTGAAAAGCTGAAAAACGAGGAATCTTA
GAGTAATCACCTTATCTGGGTAGTAGCTTAGGAAACAGTTAGAGGTGACG
TCAGCAGACACACGGAGTCGATAAAGGTCGACTTCATTATACATTAACGG
TAATTGTAATTAATGATTCGAATATTCATGAACTATTTTTTCCTTTCTTT
CTGTAGGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTTACGAAGTT
GAAAAATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAAGATGACTA
CGTGGAATTCGTAAAAGGCGTTGGGTAAGTTTCAACATCATACATTTGTA
GTCCCTAGCCTGGGACCTTTTCTGGTTTACCGCCTGGTTTTCCTAAAAGA
TTTTGCATTCAAATACCAGAGACAACGCATGCGTACTTTTGATGATTCAA
ATATTGCACAAAGATAAGAAATGACCTACCCTGGTAGGCATCTCTAGACC
AAGCTGTAAATAACAGAAATGTCAAAATAAGAAAATAATTTACAGCTCGG
ATATCCATGCTATATATGTAGTCTCTAGTGTGGGTGGATAAGGTGTGAAA
TATGAGTGCTCAATATTACCCCTTGTACAAATGATCAAACACTGAATTTC
AAAATGGCACTGGGAAATTTCTTCAAAAAAGGGCACAGTTATTTGTCAGA
AGTGCAAACCAAACGTCAGTTTTAAGCTAAATAACATACCTAAATCAAAA
CAAACTCCCTGATATCTTTCAATGCAAATACATAGAGCCCAGTGGTCGAA
CTAAAACAAACAAAATTTGATCTTATCTTGCGGTTTGGTGGTTGTGACAC
TTGGTGACAGCCAGCCACGAGCCCCTTCTAATCGCACTCTTGACTTGTGA
CGTAATGAAATGGCAGAACACTTAAGAGGCCTGTCTATTCCACTTCAAAA
CACTCTTGAGTTGCGGGATTTCATCTTAAGAGCATTTTATTTTGGTTCCT
TCTACGGGAAGCCTTATCTTATAGCGTGCCGAAATTTCGCTATCATCTTC
TATTAAATTTTCGCTTAGAACTGCTAGGCTAGCATGCTAGACCACTAAAT
CAGACACAGACGACTCCAGTCTATAACAAATTATTAATTCTCATTATAGA
TGTTACTCCAGCGTTGGAAGACAAAACGGGCGACAAGTCGTTTCAATTGG
TGAGGGTTGTGAAACAACAAAAACTGTAGTTCATGAGTTACTTCACACTG
TGGGAATGTTTCATGAGATGAGTCGATATGACCGTGGTTTATACGTCAAA
ATCTTGTGGTGGAACATACAAAGAGGTGCCGAGAAAAACTTCGCCGTCTA
TGATCACGGTGTAATCGACTCAATGAATTTTCCGTACGATTTTGAAAGCG
CAATGCATTATTATAACAACGAATTCACTAAAAATGGACATGACACAATC
CAGTCTTTAGAGAACCCCAAATTAAGAATCGGTAATTATCATGGCATGAG
TAAAATGGATGTCAAAAAAGTATACCAGTTTTATAAGTGTTACAAGAAGA
AGGAACGTCCGCAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAAG
AAATATGAAAATCATTGTTCCACACAGTGGTTTNCAAAAGAACGAATGCA
AGGACAAATATAATTGGTGTAAGAAATATGAAAATCATTGTTCCACGCAA
TGGTTCGCTGAAAGTTACTGTCAGAAGACATGTAAAGTTTGTTTATAGAA
TCCATTATAATCAATTATCATTTATTTTTAATTAGGTAGAATTTTTCAAT
TTTAAAATCTGAAATAGTAGTACTGGACTTATGAGTTTTAAGATTCGGTT
AAGCTTCAAAAGCTTTTTAAATTTTAAAATCTTTATTTTCATGATAATCA
TGACGTAATGTTTTATACGGAAGCACCCAGATTAGCCAGGGCGTTTGTCA
TTAGTTTTATTGTATAAAATTCAAAATCAGTGGCGAATACCCAGTCTTTT
TTGGTTGCTGCTATATAAAACATTACGTCATGAATATCGAGAGTAGTAGT
ACTGAACTTATGAATTTGAAGATTCGGTAGAGCTTCAAAAACCAATTCTT
AAACGCAGGTCATTTGAATTAAATGGTGAAAATATGCGTATGTTGTGAAA
TCCCAGCTGGCACACAACGTTGTTTCAACGTTAATCTAACGCTCACAACG
TCCATATAACGTTAGATTAACATTAAAACAACGTTGTGTGCCAGCTGGGA
TGCTTTAACTAATGTTTGCGTTTGCTAAAAGTTACCATGACTACTATCGT
TCAGAAAGAAACAATTTAATGTAATATAGAATAATGTAAATATTAAAAAA
TATATTTAGAAACTATACATATGGAGAGATTTGTACTATATCGAGAAGTA
TTGTAGATTTTATTGCCTGGTATCGCCTATATGGGTGTCGAAGTTGATAT
TTTTAAGGCGACGGCATCTATCCACCAAAAACACACATCAAATTGTTTTG
GTGTATGGCTTATTTTATTTATGGAAAAGAGATTATACATTTATATATGC
TTTGTAAATAATATCGGGTGCTTATATAAAAATGAAAACAAGTTGGACAA
AAAACACAAAAGAAACATTACAATTGATAATTTGCGCATTTTTTATTGTC
CCCTTTTGCTGAAACTACTGAAGTGGGAACAACCTTAGTCTGGAGCTCCA
TACTCTCTATTCAAACTTACACCGCATAAGCAAAAATCCCATCAGAAGCT
ACTCATTGAGAGTATGGTATTTTTG

Coding sequence (CDS) from alignment at sc0000052:127321..135395-

>TCONS_00005324 ID=TCONS_00005324|Name=TCONS_00005324|organism=Clytia hemisphaerica|type=CDS|length=4485bp|location=Sequence derived from alignment at sc0000052:127321..135395- (Clytia hemisphaerica)
ATGTTACTCCAGCGTTGGAAGACAAAACGGGCGACAAGTCGTTTCAATTG
GTGAGGGTTGTGAAACAACAAAAACTGTAGTTCATGAGTTACTTCACACT
GTGGGAATGTTTCATGAGATGAGTCGATATGACCGTGGTTTATACGTCAA
AATCTTGTGGTGGAACATACAAAGAGGTGCCGAGAAAAACTTCGCCGTCT
ATGATCACGGTGTAATCGACTCAATGAATTTTCCGTACGATTTTGAAAGC
GCAATGCATTATTATAACAACGAATTCACTAAAAATGGACATGACACAAT
CCAGTCTTTAGAGAACCCCAAATTAAGAATCGGTAATTATCATGGCATGA
GTAAAATGGATGTCAAAAAAGTATACCAGTTTTATAAGTGTTACAAGAAG
AAGGAACGTCCGCAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAA
GAAATATGAAAATCATTGTTCCACACAGTGGTTTNCAAAAGAACGAATGC
AAGGACAAATATAAGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTT
ACGAAGTTGAAAAATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAA
GATGACTACGTGGAATTCGTAAAAGGCGTTGGATCGATGGAGAAATGGTT
TCATCCCTTATAAACTATCATATGAATTAATTCTCATCGAAGGAGACATC
GTCCTCGATCCGAAATTACGAAAGATTCGCGCTAACGCCATCATTCACGA
AGAAGGAGAATGGAGTTCACATAAACGTGTCAAACGGGGCAACACGCTCA
CCAACAAGAAACCTCATGAACATGGAGTTTTATATGATTTGTTTTTTGTT
GTTTTCAACGTGTTTATTGGTTGTTGTTTCCAAGCCTGCAAAACCTAATG
TTACTCCAGCGTTGGAAGACAAAACGGGCGACAAGTCGTTTCAATTGGTG
AGGGTTGTGAAACAACAAAAACTGTAGTTCATGAGTTACTTCACACTGTG
GGAATGTTTCATGAGATGAGTCGATATGACCGTGGTTTATACGTCAAAAT
CTTGTGGTGGAACATACAAAGAGGTGCCGAGAAAAACTTCGCCGTCTATG
ATCACGGTGTAATCGACTCAATGAATTTTCCGTACGATTTTGAAAGCGCA
ATGCATTATTATAACAACGAATTCACTAAAAATGGACATGACACAATCCA
GTCTTTAGAGAACCCCAAATTAAGAATCGGTAATTATCATGGCATGAGTA
AAATGGATGTCAAAAAAGTATACCAGTTTTATAAGTGTTACAAGAAGAAG
GAACGTCCGCAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAAGAA
ATATGAAAATCATTGTTCCACACAGTGGTTTNCAAAAGAACGAATGCAAG
GACAAATATAAGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTTACG
AAGTTGAAAAATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAAGAT
GACTACGTGGAATTCGTAAAAGGCGTTGGATCGATGGAGAAATGGTTTCA
TCCCTTATAAACTATCATATGAATTAATTCTCATCGAAGGAGACATCGTC
CTCGATCCGAAATTACGAAAGATTCGCGCTAACGCCATCATTCACGAAGA
AGGAGAATGGAGTTCACATAAACGTGTCAAACGGGGCAACACGCTCACCA
ACAAGAAACCTCATGAACATGGAGTTTTATATGATTTGTTTTTTGTTGTT
TTCAACGTGTTTATTGGTTGTTGTTTCCAAGCCTGCAAAACCTAATGTTA
CTCCAGCGTTGGAAGACAAAACGGGCGACAAGTCGTTTCAATTGGTGAGG
GTTGTGAAACAACAAAAACTGTAGTTCATGAGTTACTTCACACTGTGGGA
ATGTTTCATGAGATGAGTCGATATGACCGTGGTTTATACGTCAAAATCTT
GTGGTGGAACATACAAAGAGGTGCCGAGAAAAACTTCGCCGTCTATGATC
ACGGTGTAATCGACTCAATGAATTTTCCGTACGATTTTGAAAGCGCAATG
CATTATTATAACAACGAATTCACTAAAAATGGACATGACACAATCCAGTC
TTTAGAGAACCCCAAATTAAGAATCGGTAATTATCATGGCATGAGTAAAA
TGGATGTCAAAAAAGTATACCAGTTTTATAAGTGTTACAAGAAGAAGGAA
CGTCCGCAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAAGAAATA
TGAAAATCATTGTTCCACACAGTGGTTTNCAAAAGAACGAATGCAAGGAC
AAATATAAGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTTACGAAG
TTGAAAAATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAAGATGAC
TACGTGGAATTCGTAAAAGGCGTTGGATCGATGGAGAAATGGTTTCATCC
CTTATAAACTATCATATGAATTAATTCTCATCGAAGGAGACATCGTCCTC
GATCCGAAATTACGAAAGATTCGCGCTAACGCCATCATTCACGAAGAAGG
AGAATGGAGTTCACATAAACGTGTCAAACGGGGCAACACGCTCACCAACA
AGAAACCTCATGAACATGGAGTTTTATATGATTTGTTTTTTGTTGTTTTC
AACGTGTTTATTGGTTGTTGTTTCCAAGCCTGCAAAACCTAATGTTACTC
CAGCGTTGGAAGACAAAACGGGCGACAAGTCGTTTCAATTGGTGAGGGTT
GTGAAACAACAAAAACTGTAGTTCATGAGTTACTTCACACTGTGGGAATG
TTTCATGAGATGAGTCGATATGACCGTGGTTTATACGTCAAAATCTTGTG
GTGGAACATACAAAGAGGTGCCGAGAAAAACTTCGCCGTCTATGATCACG
GTGTAATCGACTCAATGAATTTTCCGTACGATTTTGAAAGCGCAATGCAT
TATTATAACAACGAATTCACTAAAAATGGACATGACACAATCCAGTCTTT
AGAGAACCCCAAATTAAGAATCGGTAATTATCATGGCATGAGTAAAATGG
ATGTCAAAAAAGTATACCAGTTTTATAAGTGTTACAAGAAGAAGGAACGT
CCGCAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAAGAAATATGA
AAATCATTGTTCCACACAGTGGTTTNCAAAAGAACGAATGCAAGGACAAA
TATAAGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTTACGAAGTTG
AAAAATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAAGATGACTAC
GTGGAATTCGTAAAAGGCGTTGGATCGATGGAGAAATGGTTTCATCCCTT
ATAAACTATCATATGAATTAATTCTCATCGAAGGAGACATCGTCCTCGAT
CCGAAATTACGAAAGATTCGCGCTAACGCCATCATTCACGAAGAAGGAGA
ATGGAGTTCACATAAACGTGTCAAACGGGGCAACACGCTCACCAACAAGA
AACCTCATGAACATGGAGTTTTATATGATTTGTTTTTTGTTGTTTTCAAC
GTGTTTATTGGTTGTTGTTTCCAAGCCTGCAAAACCTAATGTTACTCCAG
CGTTGGAAGACAAAACGGGCGACAAGTCGTTTCAATTGGTGAGGGTTGTG
AAACAACAAAAACTGTAGTTCATGAGTTACTTCACACTGTGGGAATGTTT
CATGAGATGAGTCGATATGACCGTGGTTTATACGTCAAAATCTTGTGGTG
GAACATACAAAGAGGTGCCGAGAAAAACTTCGCCGTCTATGATCACGGTG
TAATCGACTCAATGAATTTTCCGTACGATTTTGAAAGCGCAATGCATTAT
TATAACAACGAATTCACTAAAAATGGACATGACACAATCCAGTCTTTAGA
GAACCCCAAATTAAGAATCGGTAATTATCATGGCATGAGTAAAATGGATG
TCAAAAAAGTATACCAGTTTTATAAGTGTTACAAGAAGAAGGAACGTCCG
CAAAAGAACGAATGCAAGGACAAATATAATTGGTGTAAGAAATATGAAAA
TCATTGTTCCACACAGTGGTTTNCAAAAGAACGAATGCAAGGACAAATAT
AAGTGACATAGCAAGAGAATCAATCAAGGAAGCATTTTACGAAGTTGAAA
AATACACGTGTATTCAATTTTCACCGTGGAAAGGAGAAGATGACTACGTG
GAATTCGTAAAAGGCGTTGGATCGATGGAGAAATGGTTTCATCCCTTATA
AACTATCATATGAATTAATTCTCATCGAAGGAGACATCGTCCTCGATCCG
AAATTACGAAAGATTCGCGCTAACGCCATCATTCACGAAGAAGGAGAATG
GAGTTCACATAAACGTGTCAAACGGGGCAACACGCTCACCAACAAGAAAC
CTCATGAACATGGAGTTTTATATGATTTGTTTTTTGTTGTTTTCAACGTG
TTTATTGGTTGTTGTTTCCAAGCCTGCAAAACCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003030XLOC_003030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005324-exon-sc0000052-1575043694:135030..135395TCONS_00005324-exon-sc0000052-1575043694:135030..135395Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1575043694:130945..131085TCONS_00005324-exon-sc0000052-1575043694:130945..131085Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1575043694:130422..130469TCONS_00005324-exon-sc0000052-1575043694:130422..130469Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1575043694:129772..129889TCONS_00005324-exon-sc0000052-1575043694:129772..129889Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1575043694:127321..128946TCONS_00005324-exon-sc0000052-1575043694:127321..128946Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1510915933:135030..135395TCONS_00005324-exon-sc0000052-1510915933:135030..135395Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1510915933:130945..131085TCONS_00005324-exon-sc0000052-1510915933:130945..131085Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1510915933:130422..130469TCONS_00005324-exon-sc0000052-1510915933:130422..130469Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1510915933:129772..129889TCONS_00005324-exon-sc0000052-1510915933:129772..129889Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1510915933:127321..128946TCONS_00005324-exon-sc0000052-1510915933:127321..128946Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1491911889:135030..135395TCONS_00005324-exon-sc0000052-1491911889:135030..135395Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1491911889:130945..131085TCONS_00005324-exon-sc0000052-1491911889:130945..131085Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1491911889:130422..130469TCONS_00005324-exon-sc0000052-1491911889:130422..130469Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1491911889:129772..129889TCONS_00005324-exon-sc0000052-1491911889:129772..129889Clytia hemisphaericaexon
TCONS_00005324-exon-sc0000052-1491911889:127321..128946TCONS_00005324-exon-sc0000052-1491911889:127321..128946Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005324-proteinTCONS_00005324-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000052supercontigsc0000052:127321..135395 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.175223	0.266945	0.205329	0.26215	0.367204	0.199264	5.44603	5.12886	9.2479	9.86296	3.23321	65.3928	14.2869	10.9502	7.04894	5.91977	10.4931	12.7489	19.3149	19.8274	17.2341	15.709	7.62765	13.881	7.30729	7.19073	25.5655	19.7519	19.6869	10.9084
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00005324 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 3.397e-37
Identity = 95/261 (36.40%), Postives = 131/261 (50.19%), Query Frame = 3 
Query:  291 MEFYMICFLLFSTCLLVVVSKPAKPILIEGDIVLDPKLRKIRANAIIHE-EGEWSSHKRVKRGNTLTNKKPHEHRWRNGFIPYKLSYELSDIARESIKEAFYEVEKYTCIQFSPWKGEDDYVEFVKGVGCYSSVG-RQNGRQVVSIGEGCETTKTVVHELLHTVGMFHEMSRYDRGLYVKILWWNIQRGAEKNFAVYDHGVIDSMNFPYDFESAMHYYNNEFTKNGHDTIQS-LENPKLRIGNYHGMSKMDVKKVYQFYKC 1064
            M+ + + + LF   LLV+ S  A P   + D  +D  +  I     +   EG+     R+ R     +    ++RW +  IPY L   L   A+  I  AF      TCI F PW GE +Y+   KG GC+SSVG R+ G+Q +SIG  C+   TV HE LH +G +HE SR DR  YV+I+W  I  G E NF  Y   + DS+N PYD+ S MHY    F      TI + + + +  IG     S  D+ K+ Q Y C
Sbjct:    1 MDLWNLSWFLFLDALLVI-SGLATPENFDVDGGMDQDIFDINEGLGLDLFEGD----IRLDRAQIRNSIIGEKYRWPHT-IPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNC 255
The following BLAST results are available for this feature:
BLAST of TCONS_00005324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1B3.397e-3736.40Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=... [more]
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