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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005313 ID=TCONS_00005313|Name=TCONS_00005313|organism=Clytia hemisphaerica|type=transcript|length=2805bp
gaatttctctgtctttgaaaattagaaCTACTGTAGATGATATCAAAAGG
CAACGTTTTGTATATAAGATTTTAGTTTAAATGGAAACTTCAGTCCAAGA
CATTGGACGAGCAGGTGACGGTGAATCTACTTTTGACGATGAAGAATTCT
GGGAAAGTGTCCCCGTTTTCCCCGATCGTGAGAAAGAAGCCCGATCTGTA
ATCCGAGAAAAATTGAACGAACGGAAACAAGCTTTTAAGAGTGAGTATGA
GGAGAGGAATAAATTGGAACGTGCGCAACGAGCGGAGGAGGAAATCGATG
TCTCATTGCACGCGCGCAAACAAGCGTTCTTCGACGACGCCAGTGATCGG
GAAACGGTGATCAAAACTTCTACCGCACTATCTGTACATTTAGATGAAAC
ATCTTTGAACGATCGAAAACAAGCGTTTCTGGATGACGCAGCGGAGAGAA
ATAATAGACGAGGCTCTAGTCTATCGGATGATATCACCGAAGGCTCGCTT
CACGAACGGAAAAAAGCGTTTTTCGATGACGCAAAAAATCGAGAGAAAGT
CGATAAAACTTCGACAGCTTTGAGTGAACATTTAGAGGAGACAACTTTGC
ATGATCGGAAACAGGCGTTTCTACAGGACGCGGACGAACGGGGAAGATTT
CAACGTACAGAAGCGTCCGAAATTCAAGAATCCTTATTATCGGACAGGAA
GAAAGCATTTTTTCAAGATGCAAGCGAAAGAGAGAAATTTAGCAAAACTG
AGGCATCTGAGATTCAAGGTTCGATACATTCGGAACGTACGAAGGCGTTT
TTCGATGAGGCCTCACAGAGAGAGAAATTCAGGCGGACTGATACACAAGA
GGGCGTTGATATGGGCGTGATTGCCAATCGACGCGCAAGTTTTCGTAAAA
AGGATGCTGAAATTCAAGCAGAGAAAGCGGTAGATGTGCGGGAAAATGTG
AGCAAGACACAACATCGAGCTCGAATGATTAAAGATGAGAATCAATTGTT
TAAAGTTTTGAATCGAAGGCGCGCCAAACTGGAAGTTGAGGAGGAAATAA
AAGAACAATTCCCAGAGGAAGGGAGTGTGAATTCACAAGAAGATTCTGTT
GATGGGAACAACAATTCTGTTGAGGAATCAACGAGTGAGAAGATTCTGGA
TGAAAGTAAAAGCGAGTACGGATGGAAAGTGTGAAGAGATCGTTTGAGAA
AGATGCTGATTCACCTTGTATGAATCTTGAAATTTCGTTGTCGAGGGGAA
GGAGGAGTCGTATTCGAAGGGTAGAGCATAATTCGGCAAAACAGATGCAC
GTAAAGAAAATCGAGAAGTCTTCCCATAATGAAACATTGATGGAGAGAGA
TTGATGATACGAAAGCGTAATGTATTTACTCGGTGTCTAGCGGAGTAAAT
GTTCTTGGAAAGTGTAAAATTGTGATATTTTGTATAAACATTTTCGAACA
AGTTTTGTATCCTAGGTGAATGAATATtgtcaaaaatgaagaaacaaata
aaaataattcaccGATAATTCACTACCTCTATCTTATTCAATACCAAATT
CGAAAAtaacataccttatcggggaaaacttcgtccgggaaaagtgacga
aattttggacatgtgacgaatattttccccggccttaatgcatttaccaa
ctaccagccagtgacgaatttttccccgtcgaaaatttttcccgacgaag
ttttccccgttAAGGTAATAAAAGTCTATACTAGAATACTAATTTTATAA
AATATGCAGTAAAAGTCTTTAAAATACATTGAAATAGTTATAAattaaag
aaagtttgagttttAAAAACTCACATAATCTACATAATCTATAAGCACTG
GGCTATCTACTCCAAAAATGTGTGGGTACAAATTCATTTAAATGTATTCC
AGTGGGCTGGAGACTTAACACAACAAATTACACATAATCTTGAAACTTTT
gtgaattttgcaaaatttttagatGGAAAAGCCTCTTTATACTTCGCCGA
GAGGGAAGAACTTTAATCATTGGtatttaataaaattcaaaaacataaaA
GCTTCCATTTTGTTCTCCGAAATGATTCATAAATGATTTAGGAATAAagc
aaaatttgttttcaagtATTTCTGATTTATACCTCGTTCGCATTGTCAAC
TTTAACATACTTTgtgtttttattcatttttacaaaatttgtcAATGTAT
CAAAATCTtactattttaaagattttcttttcacTGATCATTTTGGATAT
TCCATTTCGATTTTCGAACACTTTTACATCCTGGAAGTTAATCATCCTTC
TTTCCTTGGTCGGGTTTTTCTTTCGCTGCGAACATTCTTTGCGGAACTTC
CGAGAAGATGAGAGTTCCGGTAAACACAAGTAGCGTACCCATCCAGTGGT
AAAAAGTGAACGGATTGCGGAAGTAAACAATAGAAACAATGAGACTCATG
AACTTCCGGAGTGTCAAGATAACGGTAATCGCCAGAGCGGACAGTTCCGA
TGTCAAAGTAGTTACGGAAGTCACAcataaaaatctattttttttaaatg
ggtTTGTAAAGGAAAATTGGAATAACATTTTGTTTTTGCACATACCTTAA
GTGGGTACAAAATGACatatgatgataaaacaatacaatacaactacagt
tgacactctctaattcgacgttctactattcgatcggctcccttattcga
taaaatttaaagtCCTCGTCAAccaaaaactctcataaacgacgttccct
tcttcgataagctcccttatttgatgaaaatccaattccacttgaagatc
gaatt Run BLAST on NCBI transcript from alignment at sc0000052:743287..746383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005313 ID=TCONS_00005313|Name=TCONS_00005313|organism=Clytia hemisphaerica|type=transcript|length=3097bp|location=Sequence derived from alignment at sc0000052:743287..746383+ (Clytia hemisphaerica)
gaatttctctgtctttgaaaattagaaCTACTGTAGATGATATCAAAAGG
CAACGTTTTGTATATAAGATTTTAGTTTAAATGGAAACTTCAGTCCAAGG
TAAGAAGGTTTCGTTATaaaatcaaagaagaaaaatacTGAAGTTGCTTT
ATTGACGTCGAGCAAAATCTAGCTTGAGAGTCTAAATACAAGGCTTAAGA
CATCATTTAGTCTGAAGAATATTAAACTCAAAGAACTGTTCAGCAACTAT
GTATTTTGTCGACTTTTGACAGTTTGACAGTTTCTCATCCCGGTAGATGT
ATAGCACGTTTCAAGTCATGAAGTGGAAAATAGGTAAAACGACatgtttt
gtaaaaaattatCTGTTTACTTTGTCTAATTCTTATTTTAGACATTGGAC
GAGCAGGTGACGGTGAATCTACTTTTGACGATGAAGAATTCTGGGAAAGT
GTCCCCGTTTTCCCCGATCGTGAGAAAGAAGCCCGATCTGTAATCCGAGA
AAAATTGAACGAACGGAAACAAGCTTTTAAGAGTGAGTATGAGGAGAGGA
ATAAATTGGAACGTGCGCAACGAGCGGAGGAGGAAATCGATGTCTCATTG
CACGCGCGCAAACAAGCGTTCTTCGACGACGCCAGTGATCGGGAAACGGT
GATCAAAACTTCTACCGCACTATCTGTACATTTAGATGAAACATCTTTGA
ACGATCGAAAACAAGCGTTTCTGGATGACGCAGCGGAGAGAAATAATAGA
CGAGGCTCTAGTCTATCGGATGATATCACCGAAGGCTCGCTTCACGAACG
GAAAAAAGCGTTTTTCGATGACGCAAAAAATCGAGAGAAAGTCGATAAAA
CTTCGACAGCTTTGAGTGAACATTTAGAGGAGACAACTTTGCATGATCGG
AAACAGGCGTTTCTACAGGACGCGGACGAACGGGGAAGATTTCAACGTAC
AGAAGCGTCCGAAATTCAAGAATCCTTATTATCGGACAGGAAGAAAGCAT
TTTTTCAAGATGCAAGCGAAAGAGAGAAATTTAGCAAAACTGAGGCATCT
GAGATTCAAGGTTCGATACATTCGGAACGTACGAAGGCGTTTTTCGATGA
GGCCTCACAGAGAGAGAAATTCAGGCGGACTGATACACAAGAGGGCGTTG
ATATGGGCGTGATTGCCAATCGACGCGCAAGTTTTCGTAAAAAGGATGCT
GAAATTCAAGCAGAGAAAGCGGTAGATGTGCGGGAAAATGTGAGCAAGAC
ACAACATCGAGCTCGAATGATTAAAGATGAGAATCAATTGTTTAAAGTTT
TGAATCGAAGGCGCGCCAAACTGGAAGTTGAGGAGGAAATAAAAGAACAA
TTCCCAGAGGAAGGGAGTGTGAATTCACAAGAAGATTCTGTTGATGGGAA
CAACAATTCTGTTGAGGAATCAACGAGTGAGAAGATTCTGGATGAAAGTA
AAAGCGAGTACGGATGGAAAGTGTGAAGAGATCGTTTGAGAAAGATGCTG
ATTCACCTTGTATGAATCTTGAAATTTCGTTGTCGAGGGGAAGGAGGAGT
CGTATTCGAAGGGTAGAGCATAATTCGGCAAAACAGATGCACGTAAAGAA
AATCGAGAAGTCTTCCCATAATGAAACATTGATGGAGAGAGATTGATGAT
ACGAAAGCGTAATGTATTTACTCGGTGTCTAGCGGAGTAAATGTTCTTGG
AAAGTGTAAAATTGTGATATTTTGTATAAACATTTTCGAACAAGTTTTGT
ATCCTAGGTGAATGAATATtgtcaaaaatgaagaaacaaataaaaataat
tcaccGATAATTCACTACCTCTATCTTATTCAATACCAAATTCGAAAAta
acataccttatcggggaaaacttcgtccgggaaaagtgacgaaattttgg
acatgtgacgaatattttccccggccttaatgcatttaccaactaccagc
cagtgacgaatttttccccgtcgaaaatttttcccgacgaagttttcccc
gttAAGGTAATAAAAGTCTATACTAGAATACTAATTTTATAAAATATGCA
GTAAAAGTCTTTAAAATACATTGAAATAGTTATAAattaaagaaagtttg
agttttAAAAACTCACATAATCTACATAATCTATAAGCACTGGGCTATCT
ACTCCAAAAATGTGTGGGTACAAATTCATTTAAATGTATTCCAGTGGGCT
GGAGACTTAACACAACAAATTACACATAATCTTGAAACTTTTgtgaattt
tgcaaaatttttagatGGAAAAGCCTCTTTATACTTCGCCGAGAGGGAAG
AACTTTAATCATTGGtatttaataaaattcaaaaacataaaAGCTTCCAT
TTTGTTCTCCGAAATGATTCATAAATGATTTAGGAATAAagcaaaatttg
ttttcaagtATTTCTGATTTATACCTCGTTCGCATTGTCAACTTTAACAT
ACTTTgtgtttttattcatttttacaaaatttgtcAATGTATCAAAATCT
tactattttaaagattttcttttcacTGATCATTTTGGATATTCCATTTC
GATTTTCGAACACTTTTACATCCTGGAAGTTAATCATCCTTCTTTCCTTG
GTCGGGTTTTTCTTTCGCTGCGAACATTCTTTGCGGAACTTCCGAGAAGA
TGAGAGTTCCGGTAAACACAAGTAGCGTACCCATCCAGTGGTAAAAAGTG
AACGGATTGCGGAAGTAAACAATAGAAACAATGAGACTCATGAACTTCCG
GAGTGTCAAGATAACGGTAATCGCCAGAGCGGACAGTTCCGATGTCAAAG
TAGTTACGGAAGTCACAcataaaaatctattttttttaaatgggtTTGTA
AAGGAAAATTGGAATAACATTTTGTTTTTGCACATACCTTAAGTGGGTAC
AAAATGACatatgatgataaaacaatacaatacaactacagttgacactc
tctaattcgacgttctactattcgatcggctcccttattcgataaaattt
aaagtCCTCGTCAAccaaaaactctcataaacgacgttcccttcttcgat
aagctcccttatttgatgaaaatccaattccacttgaagatcgaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005313-exon-sc0000052-1491911889:743287..743385 | TCONS_00005313-exon-sc0000052-1491911889:743287..743385 | Clytia hemisphaerica | exon |
| TCONS_00005313-exon-sc0000052-1510915933:743287..743385 | TCONS_00005313-exon-sc0000052-1510915933:743287..743385 | Clytia hemisphaerica | exon |
| TCONS_00005313-exon-sc0000052-1575043694:743287..743385 | TCONS_00005313-exon-sc0000052-1575043694:743287..743385 | Clytia hemisphaerica | exon |
| TCONS_00005313-exon-sc0000052-1491911889:743678..746383 | TCONS_00005313-exon-sc0000052-1491911889:743678..746383 | Clytia hemisphaerica | exon |
| TCONS_00005313-exon-sc0000052-1510915933:743678..746383 | TCONS_00005313-exon-sc0000052-1510915933:743678..746383 | Clytia hemisphaerica | exon |
| TCONS_00005313-exon-sc0000052-1575043694:743678..746383 | TCONS_00005313-exon-sc0000052-1575043694:743678..746383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000052 | supercontig | sc0000052:743287..746383 + |
Blast
The following BLAST results are available for this feature:
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